Clone BS12917 Report

Search the DGRC for BS12917

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptNijA-RA
Protein status:BS12917.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12917.5prime Sequence

756 bp (756 high quality bases) assembled on 2006-10-13

> BS12917.5prime
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACATAGAAGCTTTC
TAGACC

BS12917.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6449-PA 726 ninA-RA 1..726 17..742 3605 99.8 Plus
CG6449-PB 738 ninA-RB 79..738 83..742 3275 99.8 Plus
CG6449-PC 690 ninA-RC 153..690 205..742 2690 100 Plus
CG6449-PC 690 ninA-RC 79..154 83..158 380 100 Plus
CG6449-PB 738 ninA-RB 1..67 17..83 335 100 Plus
CG6449-PC 690 ninA-RC 1..67 17..83 335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 1134 CG6449-RA 234..959 17..742 3615 99.9 Plus
NijA-RB 1146 CG6449-RB 234..971 17..742 3485 98.2 Plus
NijA-RD 1086 CG6449-RD 374..911 205..742 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10695024..10695417 550..157 1955 99.7 Minus
3L 28110227 3L 10694535..10694733 742..544 980 99.5 Minus
3L 28110227 3L 10695629..10695705 158..82 385 100 Minus
3L 28110227 3L 10696578..10696644 83..17 335 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:12:09 has no hits.

BS12917.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:54 Download gff for BS12917.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6449-PA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:42 Download gff for BS12917.5prime
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 226..962 7..749 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:21 Download gff for BS12917.5prime
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 226..962 7..749 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:21 Download gff for BS12917.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10694532..10694726 551..749 97 <- Minus
3L 10695024..10695415 159..550 99 <- Minus
3L 10695629..10695704 83..158 100 <- Minus
3L 10696579..10696639 22..82 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:42 Download gff for BS12917.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10687632..10687826 551..749 97 <- Minus
arm_3L 10688124..10688515 159..550 99 <- Minus
arm_3L 10688729..10688804 83..158 100 <- Minus
arm_3L 10689679..10689739 22..82 100 <- Minus

BS12917.complete Sequence

758 bp assembled on 2006-11-01

GenBank Submission: FJ637335

> BS12917.complete
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACATAGAAGCTTTC
TAGACCAT

BS12917.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 726 CG6449-PA 1..726 17..742 3615 99.9 Plus
NijA-RB 738 CG6449-PB 1..738 17..742 3460 98.2 Plus
NijA-RD 678 CG6449-PD 141..678 205..742 2690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-RA 1134 CG6449-RA 234..959 17..742 3615 99.9 Plus
NijA-RB 1146 CG6449-RB 234..971 17..742 3460 98.2 Plus
NijA-RD 1086 CG6449-RD 374..911 205..742 2690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10695024..10695417 550..157 1955 99.7 Minus
3L 28110227 3L 10694535..10694733 742..544 980 99.5 Minus
3L 28110227 3L 10695629..10695705 158..82 385 100 Minus
3L 28110227 3L 10696578..10696644 83..17 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:23:53 has no hits.

BS12917.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:31 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 1..726 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:40 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 223..959 7..749 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:01 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 234..959 17..742 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:31 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 223..959 7..749 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:50 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
NijA-RA 234..959 17..742 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:50 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10694535..10694726 551..742 100 <- Minus
3L 10695024..10695415 159..550 99 <- Minus
3L 10695629..10695704 83..158 100 <- Minus
3L 10696579..10696644 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:01 Download gff for BS12917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10687635..10687826 551..742 100 <- Minus
arm_3L 10688124..10688515 159..550 99 <- Minus
arm_3L 10688729..10688804 83..158 100 <- Minus
arm_3L 10689679..10689744 17..82 100   Minus

BS12917.pep Sequence

Translation from 16 to 741

> BS12917.pep
MSNLEHITLEMDKVPLGDNKTLENISKHSYGGAIDGRTRNTLRVPRAVPE
TDDDDNDDRPFVKDGNDNPGVDDGLFSTVGGNGGNGGNVNVNVPNGGRRP
SFSFPGYNGPGFVTINGVETPIPDVNAYQHKKTLAQGMMDLALLSANANQ
LRYVLETSSQHPYFYPSLLFISLSIIFQIAVGVGLILNGQYNIKNGHDIC
RANRINNYTVSGIFIVTVVNVLISAFTVDRDTVPALPANTT*

BS12917.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
NijA-PA 241 CG6449-PA 1..241 1..241 1266 100 Plus
NijA-PB 245 CG6449-PB 1..245 1..241 1251 98.4 Plus
NijA-PD 225 CG6449-PD 1..225 1..241 1149 93.4 Plus
NijA-PC 229 CG6449-PC 1..229 1..241 1134 91.8 Plus
NijC-PD 138 CG14394-PD 4..127 111..234 254 41.1 Plus