Clone Sequence Records
BS12917.5prime Sequence
756 bp (756 high quality bases) assembled on 2006-10-13
> BS12917.5prime
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACATAGAAGCTTTC
TAGACC
BS12917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6449-PA | 726 | ninA-RA | 1..726 | 17..742 | 3605 | 99.8 | Plus |
CG6449-PB | 738 | ninA-RB | 79..738 | 83..742 | 3275 | 99.8 | Plus |
CG6449-PC | 690 | ninA-RC | 153..690 | 205..742 | 2690 | 100 | Plus |
CG6449-PC | 690 | ninA-RC | 79..154 | 83..158 | 380 | 100 | Plus |
CG6449-PB | 738 | ninA-RB | 1..67 | 17..83 | 335 | 100 | Plus |
CG6449-PC | 690 | ninA-RC | 1..67 | 17..83 | 335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 1134 | CG6449-RA | 234..959 | 17..742 | 3615 | 99.9 | Plus |
NijA-RB | 1146 | CG6449-RB | 234..971 | 17..742 | 3485 | 98.2 | Plus |
NijA-RD | 1086 | CG6449-RD | 374..911 | 205..742 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10695024..10695417 | 550..157 | 1955 | 99.7 | Minus |
3L | 28110227 | 3L | 10694535..10694733 | 742..544 | 980 | 99.5 | Minus |
3L | 28110227 | 3L | 10695629..10695705 | 158..82 | 385 | 100 | Minus |
3L | 28110227 | 3L | 10696578..10696644 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:12:09 has no hits.
BS12917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:54 Download gff for
BS12917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6449-PA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:42 Download gff for
BS12917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 226..962 | 7..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:21 Download gff for
BS12917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 226..962 | 7..749 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:21 Download gff for
BS12917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10694532..10694726 | 551..749 | 97 | <- | Minus |
3L | 10695024..10695415 | 159..550 | 99 | <- | Minus |
3L | 10695629..10695704 | 83..158 | 100 | <- | Minus |
3L | 10696579..10696639 | 22..82 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:42 Download gff for
BS12917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10687632..10687826 | 551..749 | 97 | <- | Minus |
arm_3L | 10688124..10688515 | 159..550 | 99 | <- | Minus |
arm_3L | 10688729..10688804 | 83..158 | 100 | <- | Minus |
arm_3L | 10689679..10689739 | 22..82 | 100 | <- | Minus |
BS12917.complete Sequence
758 bp assembled on 2006-11-01
GenBank Submission: FJ637335
> BS12917.complete
GAAGTTATCAGTCGACATGAGTAACCTAGAGCATATTACGCTGGAAATGG
ATAAAGTGCCACTAGGAGATAATAAAACTTTGGAAAATATCAGCAAACAC
AGCTATGGCGGTGCAATCGACGGACGGACACGTAATACTCTTCGAGTGCC
CAGAGCAGTTCCAGAAACCGATGATGATGACAACGACGATCGTCCCTTTG
TTAAAGATGGCAATGATAATCCCGGCGTGGATGACGGTCTTTTTTCAACT
GTTGGAGGCAACGGAGGCAACGGCGGCAATGTGAATGTAAACGTTCCCAA
TGGAGGAAGACGACCCAGTTTCTCCTTTCCGGGATACAATGGACCCGGTT
TTGTGACGATCAACGGCGTGGAGACACCCATACCCGATGTGAATGCATAT
CAGCACAAGAAGACCCTGGCTCAGGGAATGATGGACCTGGCACTTCTCTC
CGCGAATGCAAATCAATTGCGTTATGTTCTGGAGACGAGCTCACAACATC
CTTACTTTTATCCCAGTCTGCTGTTCATCTCACTCAGCATTATATTCCAG
ATTGCTGTGGGCGTGGGCCTTATATTGAATGGCCAGTATAACATCAAAAA
CGGTCACGATATCTGCCGGGCGAACAGGATCAATAATTATACAGTTAGCG
GCATTTTTATAGTCACTGTGGTCAATGTTCTAATATCAGCCTTTACTGTG
GACAGAGATACTGTGCCTGCTTTACCCGCCAATACAACATAGAAGCTTTC
TAGACCAT
BS12917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 726 | CG6449-PA | 1..726 | 17..742 | 3615 | 99.9 | Plus |
NijA-RB | 738 | CG6449-PB | 1..738 | 17..742 | 3460 | 98.2 | Plus |
NijA-RD | 678 | CG6449-PD | 141..678 | 205..742 | 2690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-RA | 1134 | CG6449-RA | 234..959 | 17..742 | 3615 | 99.9 | Plus |
NijA-RB | 1146 | CG6449-RB | 234..971 | 17..742 | 3460 | 98.2 | Plus |
NijA-RD | 1086 | CG6449-RD | 374..911 | 205..742 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10695024..10695417 | 550..157 | 1955 | 99.7 | Minus |
3L | 28110227 | 3L | 10694535..10694733 | 742..544 | 980 | 99.5 | Minus |
3L | 28110227 | 3L | 10695629..10695705 | 158..82 | 385 | 100 | Minus |
3L | 28110227 | 3L | 10696578..10696644 | 83..17 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:23:53 has no hits.
BS12917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:31 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 1..726 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:40 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 223..959 | 7..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:01 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 234..959 | 17..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:31 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 223..959 | 7..749 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:50 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
NijA-RA | 234..959 | 17..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:50 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10694535..10694726 | 551..742 | 100 | <- | Minus |
3L | 10695024..10695415 | 159..550 | 99 | <- | Minus |
3L | 10695629..10695704 | 83..158 | 100 | <- | Minus |
3L | 10696579..10696644 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:01 Download gff for
BS12917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10687635..10687826 | 551..742 | 100 | <- | Minus |
arm_3L | 10688124..10688515 | 159..550 | 99 | <- | Minus |
arm_3L | 10688729..10688804 | 83..158 | 100 | <- | Minus |
arm_3L | 10689679..10689744 | 17..82 | 100 | | Minus |
BS12917.pep Sequence
Translation from 16 to 741
> BS12917.pep
MSNLEHITLEMDKVPLGDNKTLENISKHSYGGAIDGRTRNTLRVPRAVPE
TDDDDNDDRPFVKDGNDNPGVDDGLFSTVGGNGGNGGNVNVNVPNGGRRP
SFSFPGYNGPGFVTINGVETPIPDVNAYQHKKTLAQGMMDLALLSANANQ
LRYVLETSSQHPYFYPSLLFISLSIIFQIAVGVGLILNGQYNIKNGHDIC
RANRINNYTVSGIFIVTVVNVLISAFTVDRDTVPALPANTT*
BS12917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
NijA-PA | 241 | CG6449-PA | 1..241 | 1..241 | 1266 | 100 | Plus |
NijA-PB | 245 | CG6449-PB | 1..245 | 1..241 | 1251 | 98.4 | Plus |
NijA-PD | 225 | CG6449-PD | 1..225 | 1..241 | 1149 | 93.4 | Plus |
NijA-PC | 229 | CG6449-PC | 1..229 | 1..241 | 1134 | 91.8 | Plus |
NijC-PD | 138 | CG14394-PD | 4..127 | 111..234 | 254 | 41.1 | Plus |