Clone BS12920 Report

Search the DGRC for BS12920

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG4866-RA
Protein status:BS12920.pep: full length peptide match
Sequenced Size:578

Clone Sequence Records

BS12920.complete Sequence

578 bp assembled on 2010-02-09

GenBank Submission: KX803068

> BS12920.complete
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGTAGAAGCTTTCTAGACCAT

BS12920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 546 CG4866-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 692 CG4866-RA 69..615 17..563 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17518484..17518695 154..365 1060 100 Plus
2R 25286936 2R 17518753..17518950 366..563 990 100 Plus
2R 25286936 2R 17518291..17518430 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:23:31 has no hits.

BS12920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:31 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:47 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 26..571 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:21 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..614 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:49 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 26..571 17..562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:31 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..614 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:31 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17518291..17518427 17..153 100 -> Plus
2R 17518484..17518695 154..365 100 -> Plus
2R 17518753..17518949 366..562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:21 Download gff for BS12920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13405796..13405932 17..153 100 -> Plus
arm_2R 13405989..13406200 154..365 100 -> Plus
arm_2R 13406258..13406454 366..562 100   Plus

BS12920.5prime Sequence

576 bp (576 high quality bases) assembled on 2006-10-13

> BS12920.5prime
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGTAGAAGCTTTCTAGACC

BS12920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-PA 546 CG4866-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 692 CG4866-RA 69..615 17..563 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17518484..17518695 154..365 1060 100 Plus
2R 25286936 2R 17518753..17518950 366..563 990 100 Plus
2R 25286936 2R 17518291..17518430 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:02:32 has no hits.

BS12920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:56 Download gff for BS12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:17 Download gff for BS12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..625 17..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:34 Download gff for BS12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..625 17..571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:34 Download gff for BS12920.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17518484..17518695 154..365 100 -> Plus
2R 17518753..17518960 366..571 98   Plus
2R 17518291..17518427 17..153 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:17 Download gff for BS12920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13405989..13406200 154..365 100 -> Plus
arm_2R 13405796..13405932 17..153 100 -> Plus
arm_2R 13406258..13406465 366..571 98   Plus

BS12920.3prime Sequence

577 bp (500 high quality bases) assembled on 2006-10-13

> BS12920.3prime
ATGGTCTAGAAAGCTTCTACATTTGGAAATCGTCACGCATGTCGTTGTAG
CGGAGTACATGCTCCTTGATCTTGGAGCCATCCACCCAGGTGACAAAGTC
CTCGAGGTTTCTGGAGACCAGAAAAGCACGATCCTTAATCATTTCCGGAC
CAACACGCACATGACCATGCTCTATGAGGTCTGTGGCCGCTTTCAGGTGC
TCCGACATTCGAAGTTTCACCATGATCACGGGTAGACGACGTCGGCAAAA
GTGGCTGGCAGATATCTTGGCCGCCGTTTCCAAAGTAAGCTGATCATTGG
AAACTCCCATGGCGTGCAGCTTGTTTAGGAGCATGGTGGTGGCCTCCGTC
TTGAAAGGTTCTGAAGCATCCAGCTTAGCTATCCTCTCTGCCAGTTCCCG
TATCTCCCTGGACAACTTGTTATACTTGGTGTAGTCCTCCCTTTTTTGAA
TGTGAAAGCGCCTAAGGATTTTGTTCTCCTTGCCGCCGTTGTCCACTTTC
CAGGTGATGAAGTCCACCTTTTTAAAGCAGCTTCTGCTCATGAAATTTGA
GTTTACGAACCATGTCGACTGATAACT

BS12920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-PA 546 CG4866-RA 1..546 563..17 2670 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 692 CG4866-RA 69..615 563..16 2700 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17518484..17518695 425..214 1060 100 Minus
2R 25286936 2R 17518753..17518950 213..16 975 99.5 Minus
2R 25286936 2R 17518291..17518430 563..423 655 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 16:20:31 has no hits.

BS12920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:56 Download gff for BS12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-PA 1..546 17..563 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:45:58 Download gff for BS12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..625 8..563 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:42 Download gff for BS12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..625 8..563 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:42 Download gff for BS12920.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17518291..17518427 426..563 99 -> Minus
2R 17518484..17518695 214..425 100 -> Minus
2R 17518753..17518960 8..213 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:45:58 Download gff for BS12920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13405796..13405932 426..563 99 -> Minus
arm_2R 13405989..13406200 214..425 100 -> Minus
arm_2R 13406258..13406465 8..213 97   Minus

BS12920.pep Sequence

Translation from 16 to 561

> BS12920.pep
MVRKLKFHEQKLLKKVDFITWKVDNGGKENKILRRFHIQKREDYTKYNKL
SREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGVSNDQLTLETAAKI
SASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVRVGPEMIKDPAFLVS
RNLEDFVTWVDGSKIKEHVLRYNDMRDDFQM*

BS12920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-PA 181 CG4866-PA 1..181 1..181 932 100 Plus