Clone Sequence Records
BS12920.complete Sequence
578 bp assembled on 2010-02-09
GenBank Submission: KX803068
> BS12920.complete
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGTAGAAGCTTTCTAGACCAT
BS12920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 546 | CG4866-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 692 | CG4866-RA | 69..615 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17518484..17518695 | 154..365 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 17518753..17518950 | 366..563 | 990 | 100 | Plus |
2R | 25286936 | 2R | 17518291..17518430 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:23:31 has no hits.
BS12920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:31 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:47 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 26..571 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:21 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..614 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:49 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 26..571 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:31 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..614 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:31 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17518291..17518427 | 17..153 | 100 | -> | Plus |
2R | 17518484..17518695 | 154..365 | 100 | -> | Plus |
2R | 17518753..17518949 | 366..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:21 Download gff for
BS12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13405796..13405932 | 17..153 | 100 | -> | Plus |
arm_2R | 13405989..13406200 | 154..365 | 100 | -> | Plus |
arm_2R | 13406258..13406454 | 366..562 | 100 | | Plus |
BS12920.5prime Sequence
576 bp (576 high quality bases) assembled on 2006-10-13
> BS12920.5prime
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGTAGAAGCTTTCTAGACC
BS12920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:04:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-PA | 546 | CG4866-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 692 | CG4866-RA | 69..615 | 17..563 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17518484..17518695 | 154..365 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 17518753..17518950 | 366..563 | 990 | 100 | Plus |
2R | 25286936 | 2R | 17518291..17518430 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:02:32 has no hits.
BS12920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:56 Download gff for
BS12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:17 Download gff for
BS12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..625 | 17..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:34 Download gff for
BS12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..625 | 17..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:34 Download gff for
BS12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17518484..17518695 | 154..365 | 100 | -> | Plus |
2R | 17518753..17518960 | 366..571 | 98 | | Plus |
2R | 17518291..17518427 | 17..153 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:17 Download gff for
BS12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13405989..13406200 | 154..365 | 100 | -> | Plus |
arm_2R | 13405796..13405932 | 17..153 | 100 | -> | Plus |
arm_2R | 13406258..13406465 | 366..571 | 98 | | Plus |
BS12920.3prime Sequence
577 bp (500 high quality bases) assembled on 2006-10-13
> BS12920.3prime
ATGGTCTAGAAAGCTTCTACATTTGGAAATCGTCACGCATGTCGTTGTAG
CGGAGTACATGCTCCTTGATCTTGGAGCCATCCACCCAGGTGACAAAGTC
CTCGAGGTTTCTGGAGACCAGAAAAGCACGATCCTTAATCATTTCCGGAC
CAACACGCACATGACCATGCTCTATGAGGTCTGTGGCCGCTTTCAGGTGC
TCCGACATTCGAAGTTTCACCATGATCACGGGTAGACGACGTCGGCAAAA
GTGGCTGGCAGATATCTTGGCCGCCGTTTCCAAAGTAAGCTGATCATTGG
AAACTCCCATGGCGTGCAGCTTGTTTAGGAGCATGGTGGTGGCCTCCGTC
TTGAAAGGTTCTGAAGCATCCAGCTTAGCTATCCTCTCTGCCAGTTCCCG
TATCTCCCTGGACAACTTGTTATACTTGGTGTAGTCCTCCCTTTTTTGAA
TGTGAAAGCGCCTAAGGATTTTGTTCTCCTTGCCGCCGTTGTCCACTTTC
CAGGTGATGAAGTCCACCTTTTTAAAGCAGCTTCTGCTCATGAAATTTGA
GTTTACGAACCATGTCGACTGATAACT
BS12920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-PA | 546 | CG4866-RA | 1..546 | 563..17 | 2670 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 692 | CG4866-RA | 69..615 | 563..16 | 2700 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17518484..17518695 | 425..214 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 17518753..17518950 | 213..16 | 975 | 99.5 | Minus |
2R | 25286936 | 2R | 17518291..17518430 | 563..423 | 655 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:20:31 has no hits.
BS12920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:34:56 Download gff for
BS12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-PA | 1..546 | 17..563 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:45:58 Download gff for
BS12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..625 | 8..563 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:42 Download gff for
BS12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..625 | 8..563 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:42 Download gff for
BS12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17518291..17518427 | 426..563 | 99 | -> | Minus |
2R | 17518484..17518695 | 214..425 | 100 | -> | Minus |
2R | 17518753..17518960 | 8..213 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:45:58 Download gff for
BS12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13405796..13405932 | 426..563 | 99 | -> | Minus |
arm_2R | 13405989..13406200 | 214..425 | 100 | -> | Minus |
arm_2R | 13406258..13406465 | 8..213 | 97 | | Minus |
BS12920.pep Sequence
Translation from 16 to 561
> BS12920.pep
MVRKLKFHEQKLLKKVDFITWKVDNGGKENKILRRFHIQKREDYTKYNKL
SREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGVSNDQLTLETAAKI
SASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVRVGPEMIKDPAFLVS
RNLEDFVTWVDGSKIKEHVLRYNDMRDDFQM*
BS12920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-PA | 181 | CG4866-PA | 1..181 | 1..181 | 932 | 100 | Plus |