Clone BS12930 Report

Search the DGRC for BS12930

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptnonA-RA
Protein status:BS12930.pep: full length peptide match
Sequenced Size:2135

Clone Sequence Records

BS12930.5prime Sequence

837 bp (738 high quality bases) assembled on 2006-10-13

> BS12930.5prime
GAAGTTATCAGTCGACATGGAAAGTGCGGGGAAACAAGATAATAACGCCA
CGCAACAGTTGCCGCAGCGACAGCAGCGGGGAAACCAGCAGGCCAACAAA
AATCTCGGCAAGCATAATGCACAAAAACAAAATGATTCCGCGGACGGAGG
CCCGGCTGAAAAGAAGCAACGATTCGGTGGTCCAAATGCCCAGAATCAAA
ACCAGAACCAGAATCAAAATGGTGGTGTAACGGGCGGTGGTGGTGCAGTT
GGTGGCCCCAATCAAAATAAGAATTTTGGAAACAACAAGGGTGGGTTCGT
TGGAAACCGCAATCGCAACAATAATCGCGCTGGAAACCAAAACCGGACTT
TTCCAGGCAACAACAATCCAAATCAAAAGCCCAATAACGAAACATCAAAG
GCGGACGGCCCTAATGCACTTGCTAAGAACAATGAACCGGCAACTGCAGC
TGCTGGCCAAAATCAAGCGAATCAGAACGCCAACAAGGGCCAAAATCAAC
GGCAAGGACAAAACCAAAATCAAAATCAAGTCCATGGTCAAGGAAATCAA
GGAGGACCAGGAAATCAAGGGGGAGCAGGCAATCAAGGAGGCCAAGGAAA
TCAAGGAGGAGCCGGAAATCAGGGAAATGGTCAAGGATTCAGAGGTCGCA
ATGCTGGTAACAATCAAGGTGGCGGTTTCTCCGGAGGTCCGCAGAACCAG
CAGCGTGACAACCGAAACCGGAGTGGTCCACGCCCTGGCGGAGGTGCTGG
TGGCGCGATGAACAGCACCAATATGGGTGGTGGTGGTGGTGGCGGTGGAG
GCNGTGGTCCGCGCGGCGGTGAAAACTTCTTCATTAC

BS12930.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4211-PB 2229 nonA-RB 1..821 17..837 4061 99.7 Plus
CG4211-PA 2103 nonA-RA 1..821 17..837 4061 99.7 Plus
CG4211-PC 2097 nonA-RC 1..821 17..837 4061 99.7 Plus
CG12460-PA 924 CG12460-RA 247..567 416..734 1200 95 Plus
CG17706-PA 387 CG17706-RA 68..321 450..703 1045 96.4 Plus
CG12460-PA 924 CG12460-RA 1..139 63..201 520 94.9 Plus
CG12460-PA 924 CG12460-RA 141..243 271..373 365 94.1 Plus
CG17706-PA 387 CG17706-RA 349..387 723..761 145 94.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 6746 CG4211-RD 130..950 17..837 4079 99.8 Plus
nonA-RC 5008 CG4211-RC 130..950 17..837 4079 99.8 Plus
nonA-RA 3747 CG4211-RA 130..950 17..837 4079 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16363358..16363821 374..837 2294 99.6 Plus
X 23542271 X 16361698..16362054 17..373 1785 100 Plus
2R 25286936 2R 4730778..4731241 835..374 1545 89.9 Minus
3L 28110227 3L 24534656..24535070 416..835 1529 92.4 Plus
Blast to na_te.dros performed on 2015-02-11 17:51:35 has no hits.

BS12930.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:03 Download gff for BS12930.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4211-PC 1..821 17..837 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:45 Download gff for BS12930.5prime
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..950 17..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:29:09 Download gff for BS12930.5prime
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..950 17..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:29:09 Download gff for BS12930.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16361698..16362054 17..373 100 -> Plus
X 16363358..16363821 374..837 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:45 Download gff for BS12930.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16255731..16256087 17..373 100 -> Plus
arm_X 16257391..16257854 374..837 99   Plus

BS12930.complete Sequence

2135 bp assembled on 2009-12-07

GenBank Submission: KX800381

> BS12930.complete
GAAGTTATCAGTCGACATGGAAAGTGCGGGGAAACAAGATAATAACGCCA
CGCAACAGTTGCCGCAGCGACAGCAGCGGGGAAACCAGCAGGCCAACAAA
AATCTCGGCAAGCATAATGCACAAAAACAAAATGATTCCGCGGACGGAGG
CCCGGCTGAAAAGAAGCAACGATTCGGTGGTCCAAATGCCCAGAATCAAA
ACCAGAACCAGAATCAAAATGGTGGTGTAACGGGCGGTGGTGGTGCAGTT
GGTGGCCCCAATCAAAATAAGAATTTTGGAAACAACAAGGGTGGGTTCGT
TGGAAACCGCAATCGCAACAATAATCGCGCTGGAAACCAAAACCGGACTT
TTCCAGGCAACAACAATCCAAATCAAAAGCCCAATAACGAAACATCAAAG
GCGGACGGCCCTAATGCACTTGCTAAGAACAATGAACCGGCAACTGCAGC
TGCTGGCCAAAATCAAGCGAATCAGAACGCCAACAAGGGCCAAAATCAAC
GGCAAGGACAAAACCAAAATCAAAATCAAGTCCATGGTCAAGGAAATCAA
GGAGGACCAGGAAATCAAGGGGGAGCAGGCAATCAAGGAGGCCAAGGAAA
TCAAGGAGGAGCCGGAAATCAGGGAAATGGTCAAGGATTCAGAGGTCGCA
ATGCTGGTAACAATCAAGGTGGCGGTTTCTCCGGAGGTCCGCAGAACCAG
CAGCGTGACAACCGAAACCGGAGTGGTCCACGCCCTGGCGGAGGTGCTGG
TGGCGCGATGAACAGCACCAATATGGGTGGTGGTGGTGGTGGCGGTGGAG
GCGGTGGTCCGCGCGGCGGTGAAGACTTCTTCATTACCCAGCGGTTACGC
AGCATTTCTGGGCCCACCTTTGAACTGGAACCGGTGGAAGTGCCCACGGA
GACGAAGTTCTCTGGACGAAATCGTCTCTATGTGGGCAACCTGACCAATG
ACATCACCGACGATGAGCTGCGCGAGATGTTCAAGCCATATGGCGAGATT
AGCGAGATCTTCTCGAACCTGGATAAGAACTTTACATTCCTAAAGGTCGA
CTATCATCCCAATGCCGAGAAGGCTAAACGCGCCCTGGACGGATCGATGC
GAAAGGGTCGCCAGTTGCGTGTACGATTCGCACCGAATGCCACCATTTTG
CGGGTGAGCAATCTCACACCGTTCGTTTCCAACGAGCTGCTGTACAAGTC
TTTCGAAATCTTTGGTCCCATCGAGAGGGCCAGCATCACCGTCGACGATC
GTGGCAAGCATATGGGCGAGGGCATAGTTGAGTTTGCCAAAAAGTCATCG
GCCAGCGCCTGTCTGCGGATGTGCAATGAGAAGTGCTTCTTCCTGACTGC
TTCCCTTCGACCGTGTCTGGTTGATCCGATGGAGGTGAATGACGATACCG
ACGGACTGCCGGAGAAGGCGTTCAACAAAAAGATGCCCGACTTCAACCAG
GAGCGTAGCATTGGTCCGCGCTTCGCCGATCCCAATTCGTTTGAGCACGA
GTACGGTTCGCGCTGGAAGCAGCTGCACAATTTGTTCAAAACCAAGCAGG
ACGCGCTCAAACGCGAACTGAAAATGGAGGAGGACAAGTTGGAGGCTCAG
ATGGAGTATGCACGCTATGAGCAAGAAACTGAACTGTTGCGTCAAGAGCT
GCGAAAACGCGAAGTTGACAACGAGCGCAAGAAATTGGAGTGGGAGATGC
GCGAGAAGCAGGCCGAGGAGATGCGCAAGCGCGAGGAGGAGACCATGCGA
CGTCATCAGACCGAGATGCAGAGCCACATGAATCGCCAGGAGGAGGACAT
GCTCCGTCGGCAGCAGGAGACACTGTTCATGAAGGCACAGCAGCTCAATT
CGTTGCTGGATCAGCAGGAGGGATTTGGTGGCGGCGGCGGCGGTAACAAC
TCCACTTTTGACAACTTCGCTGGCAATAGCAATTCGCCATTCGAGGTTTT
TAGAGGCAATAACAATAACAATTCCACAATGATTGGAAACAATGCTGCCC
CCAACACACAGGACTCCTTCGCTTTTGAATTTGGGGTTAACAATATGAAC
CAAGGCGGCAATCAACGTGGAAATAATGGCGGAGGAAATAATGTCCCATG
GGGACGTCGACGTTTTTAGAAGCTTTCTAGACCAT

BS12930.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 2103 CG4211-PD 1..2103 17..2119 10515 100 Plus
nonA-RA 2103 CG4211-PA 1..2103 17..2119 10515 100 Plus
nonA-RB 2229 CG4211-PB 1..1997 17..2013 9985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-RD 6746 CG4211-RD 130..2233 17..2120 10520 100 Plus
nonA-RA 3747 CG4211-RA 130..2233 17..2120 10520 100 Plus
nonA-RB 2358 CG4211-RB 130..2126 17..2013 9985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16363358..16364630 374..1646 6365 100 Plus
2R 25286936 2R 4730496..4731241 1113..374 2570 90.9 Minus
X 23542271 X 16361698..16362054 17..373 1785 100 Plus
3L 28110227 3L 24534656..24535110 416..875 1695 92.6 Plus
X 23542271 X 16365203..16365514 1645..1956 1560 100 Plus
3R 32079331 3R 16641129..16641937 929..1740 1505 79.3 Plus
2R 25286936 2R 4731512..4731912 1224..1646 1160 87.6 Plus
3L 28110227 3L 24535120..24535435 1050..1381 1155 91.3 Plus
3L 28110227 3L 24534090..24534373 63..373 855 86.5 Plus
X 23542271 X 16366902..16367012 2010..2120 555 100 Plus
Y 3667352 Y 691961..692084 221..345 470 93.6 Plus
Y 3667352 Y 692116..692208 424..522 325 90.9 Plus
X 23542271 X 16365585..16365643 1954..2012 295 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:13:27 has no hits.

BS12930.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:52 Download gff for BS12930.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 166..2268 17..2119 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:04 Download gff for BS12930.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..2232 17..2119 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:51 Download gff for BS12930.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 166..2268 17..2119 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:24:34 Download gff for BS12930.complete
Subject Subject Range Query Range Percent Splice Strand
nonA-RA 130..2232 17..2119 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:24:34 Download gff for BS12930.complete
Subject Subject Range Query Range Percent Splice Strand
X 16361698..16362054 17..373 100 -> Plus
X 16363358..16364630 374..1646 100 -> Plus
X 16365205..16365513 1647..1955 100 -> Plus
X 16365587..16365642 1956..2011 100 -> Plus
X 16366904..16367011 2012..2119 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:04 Download gff for BS12930.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16255731..16256087 17..373 100 -> Plus
arm_X 16257391..16258663 374..1646 100 -> Plus
arm_X 16259238..16259546 1647..1955 100 -> Plus
arm_X 16259620..16259675 1956..2011 100 -> Plus
arm_X 16260937..16261044 2012..2119 100   Plus

BS12930.pep Sequence

Translation from 16 to 2118

> BS12930.pep
MESAGKQDNNATQQLPQRQQRGNQQANKNLGKHNAQKQNDSADGGPAEKK
QRFGGPNAQNQNQNQNQNGGVTGGGGAVGGPNQNKNFGNNKGGFVGNRNR
NNNRAGNQNRTFPGNNNPNQKPNNETSKADGPNALAKNNEPATAAAGQNQ
ANQNANKGQNQRQGQNQNQNQVHGQGNQGGPGNQGGAGNQGGQGNQGGAG
NQGNGQGFRGRNAGNNQGGGFSGGPQNQQRDNRNRSGPRPGGGAGGAMNS
TNMGGGGGGGGGGGPRGGEDFFITQRLRSISGPTFELEPVEVPTETKFSG
RNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFLKVDYHPNA
EKAKRALDGSMRKGRQLRVRFAPNATILRVSNLTPFVSNELLYKSFEIFG
PIERASITVDDRGKHMGEGIVEFAKKSSASACLRMCNEKCFFLTASLRPC
LVDPMEVNDDTDGLPEKAFNKKMPDFNQERSIGPRFADPNSFEHEYGSRW
KQLHNLFKTKQDALKRELKMEEDKLEAQMEYARYEQETELLRQELRKREV
DNERKKLEWEMREKQAEEMRKREEETMRRHQTEMQSHMNRQEEDMLRRQQ
ETLFMKAQQLNSLLDQQEGFGGGGGGNNSTFDNFAGNSNSPFEVFRGNNN
NNSTMIGNNAAPNTQDSFAFEFGVNNMNQGGNQRGNNGGGNNVPWGRRRF
*

BS12930.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
nonA-PD 700 CG4211-PD 1..700 1..700 3751 100 Plus
nonA-PA 700 CG4211-PA 1..700 1..700 3751 100 Plus
nonA-PB 742 CG4211-PB 1..677 1..677 3554 98.4 Plus
nonA-PC 698 CG4211-PC 1..665 1..665 3551 100 Plus
nonA-l-PB 630 CG10328-PB 1..630 1..700 1879 60 Plus