Clone Sequence Records
BS12931.complete Sequence
1511 bp assembled on 2009-12-07
GenBank Submission: KX800603
> BS12931.complete
GAAGTTATCAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACC
TGAGTCTGGCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGG
CGGTTTTCTGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGG
AAGCTCCGACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACT
CCGCCGGAGGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTT
GGAAGGCGGGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGAC
TCTGAGGAAAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCG
TCGGATGCACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTC
GTCCAACTGGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCAC
ACAAAACGCAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCG
CCTGGCGCGGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCC
ATCTACTCCGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGA
TGCCACGCACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTC
GGGGCATCGTGGAGGAAAGTGTGACCGGGGTGCACCGGCTGTACATGCTG
TCAAAGGGCGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGT
GACCAAGAACAAGTTTGATACTTTCTACACGTGTCGTGACTCCATCCTGG
ACAGTCTGAAACGCACCACGGATATAATGTTTGGCGGAAAGCAGGTGGTG
ATCTGTGGGTACGGTGATGTGGGAAAGGGCTGTGCCCAGTCCCTGAAGGG
CCAAGGATGCATTGTTTATGTTACGGAAGTGGATCCCATATGTGCTCTAC
AAGCTGCCATGGATGGATTCCGGGTGGTACGGCTCAACGAGGTCATCAGG
ACGGTGGATGTGGTGGTTACGGCAACTGGAAACAAAAATGTTATTACCAG
GGATCACATGAATCGCATGAAGAATGGTTGTATCCTCTGCAATATGGGAC
ATTCCTGCTCGGAGATTGATGTGAATGGCTTGCATACCCCGGAGCTAACG
TGGGAGCGTGTCCGTTCTCAAGTGGATCACATCAGGTGGCCGGACGGCAG
GATGATCATTTTGCTCGCCGAGGGAAGACTGGTGAATTTGTCCTGTTCCA
CCATTTCGTCCTTTGTCGTATCCGTGGCCTCATCCACCCAGGCTTTGGCC
CTGATTGAACTCTTCTCAGCGCCAGGAAGATATAAGTCGGATGTCTACCT
GCTGCCAAAGAAAATGGATGAATACGTGGCCAGTTTGCATCTCGCCACCT
TCGATGCTCATCTCACGGAGCTCACGGATGAGCAGTCCAAGTTTATGGGC
TTAAACAAGGCCGGGCCTTTTAAAGCCAATTACTACAGATATTAAAAGCT
TTCTAGACCAT
BS12931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ahcy89E-RC | 1479 | CG8956-PC | 1..1479 | 17..1495 | 7395 | 100 | Plus |
| Ahcy89E-RD | 1515 | CG8956-PD | 1..1472 | 17..1488 | 7360 | 100 | Plus |
| CG9977-RA | 1566 | CG9977-PA | 312..1557 | 244..1486 | 1470 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ahcy89E-RC | 1780 | CG8956-RC | 224..1702 | 17..1495 | 7395 | 100 | Plus |
| Ahcy89E-RD | 1969 | CG8956-RD | 347..1818 | 17..1488 | 7360 | 100 | Plus |
| CG9977-RA | 3020 | CG9977-RA | 848..2093 | 244..1486 | 1470 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16979477..16980143 | 804..138 | 3335 | 100 | Minus |
| 3R | 32079331 | 3R | 16979087..16979408 | 1123..802 | 1610 | 100 | Minus |
| 3R | 32079331 | 3R | 16978780..16979024 | 1367..1123 | 1225 | 100 | Minus |
| 3R | 32079331 | 3R | 16978590..16978711 | 1488..1367 | 610 | 100 | Minus |
| 3L | 28110227 | 3L | 2770046..2770491 | 900..455 | 610 | 75.8 | Minus |
| 3L | 28110227 | 3L | 2769393..2769923 | 1486..959 | 505 | 73.4 | Minus |
| 3L | 28110227 | 3L | 2771272..2771478 | 450..244 | 375 | 78.7 | Minus |
| 3R | 32079331 | 3R | 16980294..16980365 | 137..66 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 16981639..16981689 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:43:36 has no hits.
BS12931.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:32 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 1..1479 | 17..1495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:51 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 221..1697 | 17..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:58 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 224..1700 | 17..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:03 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 221..1697 | 17..1493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:23 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 224..1700 | 17..1493 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:23 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16978586..16978710 | 1368..1493 | 97 | <- | Minus |
| 3R | 16978780..16979023 | 1124..1367 | 100 | <- | Minus |
| 3R | 16979087..16979405 | 805..1123 | 100 | <- | Minus |
| 3R | 16979477..16980143 | 138..804 | 100 | <- | Minus |
| 3R | 16980294..16980363 | 68..137 | 100 | <- | Minus |
| 3R | 16981639..16981689 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:58 Download gff for
BS12931.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12804308..12804432 | 1368..1493 | 97 | <- | Minus |
| arm_3R | 12804502..12804745 | 1124..1367 | 100 | <- | Minus |
| arm_3R | 12804809..12805127 | 805..1123 | 100 | <- | Minus |
| arm_3R | 12805199..12805865 | 138..804 | 100 | <- | Minus |
| arm_3R | 12806016..12806085 | 68..137 | 100 | <- | Minus |
| arm_3R | 12807361..12807411 | 17..67 | 100 | | Minus |
BS12931.3prime Sequence
752 bp (710 high quality bases) assembled on 2006-10-13
> BS12931.3prime
ATGGTCTAGAAAGCTTTTAATATCTGTAGTAATTGGCTTTAAAAGGCCCG
GCCTTGTTTAAGCCCATAAACTTGGACTGCTCATCCGTGAGCTCCGTGAG
ATGAGCATCGAAGGTGGCGAGATGCAAACTGGCCACGTATTCATCCATTT
TCTTTGGCAGCAGGTAGACATCCGACTTATATCTTCCTGGCGCTGAGAAG
AGTTCAATCAGGGCCAAAGCCTGGGTGGATGAGGCCACGGATACGACAAA
GGACGAAATGGTGGAACAGGACAAATTCACCAGTCTTCCCTCGGCGAGCA
AAATGATCATCCTGCCGTCCGGCCACCTGATGTGATCCACTTGAGAACGG
ACACGCTCCCACGTTAGCTCCGGGGTATGCAAGCCATTCACATCAATCTC
CGAGCAGGAATGTCCCATATTGCAGAGGATACAACCATTCTTCATGCGAT
TCATGTGATCCCTGGTAATAACATTTTTGTTTCCAGTTGCCGTAACCACC
ACATCCACCGTCCTGATGACCTCGTTGAGCCGTACCACCCGGAATCCATC
CATGGCAGCTTGTAGAGCACATATGGGATCCACTTCCGTAACATAAACAA
TGCATCCTTGGCCCTTCAGGGACTGGGCACAGCCCTTTCCCACATCACCG
TACCCACAGATCACCACCTGCTTTCCGCCAAACATTATATCCGTGGTGCG
TTTCAGACTGTCCAGGATGGAGTCCCGACACGTGTAGAAAGTATCAAACT
TG
BS12931.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8956-PC | 1479 | Ahcy89E-RC | 744..1479 | 752..17 | 3655 | 99.8 | Minus |
| CG8956-PD | 1515 | Ahcy89E-RD | 744..1472 | 752..24 | 3620 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ahcy89E-RC | 1780 | CG8956-RC | 967..1702 | 752..17 | 3665 | 99.9 | Minus |
| Ahcy89E-RD | 1969 | CG8956-RD | 1090..1818 | 752..24 | 3630 | 99.9 | Minus |
| CG9977-RA | 3020 | CG9977-RA | 1391..2093 | 725..26 | 780 | 74.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16979087..16979408 | 389..710 | 1610 | 100 | Plus |
| 3R | 32079331 | 3R | 16978780..16979024 | 145..389 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 16978590..16978711 | 24..145 | 610 | 100 | Plus |
| 3L | 28110227 | 3L | 2769393..2769923 | 26..553 | 505 | 73.4 | Plus |
| 3L | 28110227 | 3L | 2770046..2770159 | 612..725 | 255 | 81.6 | Plus |
| 3R | 32079331 | 3R | 16979477..16979521 | 708..752 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:20:39 has no hits.
BS12931.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:03 Download gff for
BS12931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8956-PC | 744..1479 | 17..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:46:02 Download gff for
BS12931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 967..1702 | 17..752 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:39:05 Download gff for
BS12931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 967..1702 | 17..752 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:39:05 Download gff for
BS12931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16978590..16978710 | 24..144 | 100 | <- | Plus |
| 3R | 16978780..16979023 | 145..388 | 100 | <- | Plus |
| 3R | 16979087..16979405 | 389..707 | 100 | <- | Plus |
| 3R | 16979477..16979521 | 708..752 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:46:02 Download gff for
BS12931.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12804312..12804432 | 24..144 | 100 | <- | Plus |
| arm_3R | 12804502..12804745 | 145..388 | 100 | <- | Plus |
| arm_3R | 12804809..12805127 | 389..707 | 100 | <- | Plus |
| arm_3R | 12805199..12805243 | 708..752 | 97 | | Plus |
BS12931.5prime Sequence
854 bp (752 high quality bases) assembled on 2006-10-13
> BS12931.5prime
GAAGTTATCAGTCGACATGGCCAAAATGCCGGAGACAACGTTTGCCGACC
TGAGTCTGGCTGATAAGACTGCTGTGAAGAAGTCAAGTATTGAAGCTCGG
CGGTTTTCTGATGTGTCCACCTGCTCATTCAGTTCCACCTGTTTCACCGG
AAGCTCCGACGAGGAAGACGTCTCCCCGAAGGACAACCATCAGCGCAACT
CCGCCGGAGGCACTGACTTTTGCGTGAAGAGCATCTCGAAGAGTGCATTT
GGAAGGCGGGAGATCGAGATCGCCGAGTCGGAGATGCCGGGCATCATGAC
TCTGAGGAAAAGAGCGAAGGATGAGAAGCCCCTAAAGGGTGCCAATATCG
TCGGATGCACCCACGTCAATGCTCAGTCGGCAGTGCTGATCGAGACCCTC
GTCCAACTGGGCGCCACAGTTCGCTGGGCTGCCTGCAACATTTATTCCAC
ACAAAACGCAGTTGCCGCCGCTCTGGCAGAGGCGGGAATTCCGATCTTCG
CCTGGCGCGGAGAGACGGAGGAGGAGTTCTGGTGGTGCTTGGACAGGGCC
ATCTACTCCGACGGCTGGCAGCCGAACCTAATCCTGGACGACGGCGGCGA
TGCCACGCACCTTATGCTCAAGAAGTACCCCGACTACTTCAAGGCCATTC
GGGGCATCGTGGAGGAAAGTGTGACCGGNGTGCACCGGCTGTACATGCTG
TCAAAGGGCGGAAAACTTACTGTTCCGGCCATCAACGTTAACGACTCAGT
GACCAAGAACAAGTTTGATACTTTCTACACGTGTCGTGACTCCATCCTGG
ACAGTCTGAAACGCACCACGGATATAATGTTTGGCGGAAGCAGGTGGTGA
TCTG
BS12931.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8956-PC | 1479 | Ahcy89E-RC | 1..839 | 17..854 | 4136 | 99.7 | Plus |
| CG8956-PD | 1515 | Ahcy89E-RD | 1..839 | 17..854 | 4136 | 99.7 | Plus |
| CG9977-PA | 1566 | CG9977-RA | 553..606 | 485..538 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ahcy89E-RD | 1969 | CG8956-RD | 347..1185 | 17..854 | 4159 | 99.8 | Plus |
| Ahcy89E-RC | 1780 | CG8956-RC | 224..1062 | 17..854 | 4159 | 99.8 | Plus |
| CG9977-RA | 3020 | CG9977-RA | 848..1459 | 244..854 | 879 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16979477..16980143 | 804..138 | 3324 | 99.9 | Minus |
| 3L | 28110227 | 3L | 2770091..2770491 | 854..455 | 474 | 75.1 | Minus |
| 3L | 28110227 | 3L | 2771272..2771478 | 450..244 | 375 | 78.7 | Minus |
| 3R | 32079331 | 3R | 16980294..16980365 | 137..66 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 16981639..16981689 | 67..17 | 255 | 100 | Minus |
| 3R | 32079331 | 3R | 16979355..16979408 | 854..802 | 220 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:07:18 has no hits.
BS12931.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:03 Download gff for
BS12931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8956-PD | 1..839 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:07:59 Download gff for
BS12931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 220..1062 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:02:31 Download gff for
BS12931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ahcy89E-RC | 220..1062 | 9..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:02:31 Download gff for
BS12931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16979355..16979405 | 805..854 | 98 | <- | Minus |
| 3R | 16979477..16980143 | 138..804 | 99 | <- | Minus |
| 3R | 16980294..16980363 | 68..137 | 100 | <- | Minus |
| 3R | 16981639..16981693 | 9..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:07:59 Download gff for
BS12931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12806016..12806085 | 68..137 | 100 | <- | Minus |
| arm_3R | 12807361..12807415 | 9..67 | 93 | | Minus |
| arm_3R | 12805077..12805127 | 805..854 | 98 | <- | Minus |
| arm_3R | 12805199..12805865 | 138..804 | 99 | <- | Minus |
BS12931.pep Sequence
Translation from 16 to 1494
> BS12931.pep
MAKMPETTFADLSLADKTAVKKSSIEARRFSDVSTCSFSSTCFTGSSDEE
DVSPKDNHQRNSAGGTDFCVKSISKSAFGRREIEIAESEMPGIMTLRKRA
KDEKPLKGANIVGCTHVNAQSAVLIETLVQLGATVRWAACNIYSTQNAVA
AALAEAGIPIFAWRGETEEEFWWCLDRAIYSDGWQPNLILDDGGDATHLM
LKKYPDYFKAIRGIVEESVTGVHRLYMLSKGGKLTVPAINVNDSVTKNKF
DTFYTCRDSILDSLKRTTDIMFGGKQVVICGYGDVGKGCAQSLKGQGCIV
YVTEVDPICALQAAMDGFRVVRLNEVIRTVDVVVTATGNKNVITRDHMNR
MKNGCILCNMGHSCSEIDVNGLHTPELTWERVRSQVDHIRWPDGRMIILL
AEGRLVNLSCSTISSFVVSVASSTQALALIELFSAPGRYKSDVYLLPKKM
DEYVASLHLATFDAHLTELTDEQSKFMGLNKAGPFKANYYRY*
BS12931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ahcy89E-PC | 492 | CG8956-PC | 1..492 | 1..492 | 2566 | 100 | Plus |
| Ahcy89E-PD | 504 | CG8956-PD | 1..491 | 1..491 | 2559 | 100 | Plus |
| CG9977-PA | 521 | CG9977-PA | 43..521 | 18..492 | 1976 | 76.8 | Plus |
| Ahcy13-PC | 432 | CG11654-PC | 8..432 | 70..492 | 1146 | 52 | Plus |
| Ahcy13-PA | 432 | CG11654-PA | 8..432 | 70..492 | 1146 | 52 | Plus |
