Clone Sequence Records
BS12933.complete Sequence
614 bp assembled on 2010-02-09
GenBank Submission: KX802726
> BS12933.complete
GAAGTTATCAGTCGACATGTCTTGGCTGGTTGTTTTGTTGATCCTGTACG
TAATCTGGGATGTCAACTACTTCATCCGCTGCGTGTTCACGGTGTTCGCC
GGCCGGCTGTTCCAGCGGAAGCGCAAGGTCACGGACACCACGACGATCTA
TGGACTGTGCACCTCGCAGGACGTGGACATCTTTATCCGGCACATGAACA
ACGCCCGCTATCTGCGCGAACTGGACTTTGCCCGCTTCCATTTCTACGCC
CTCACTGGACTCTATGAGCGCATCCGGGACCGACGCGGCGGTGCCGTCCA
GGGAGCCAGCAGTGTTCGCTACCGCCGCACCATACCCATCTTCCATCCGT
ACAAGATTCAGACCAAGCTGATCTGGTGGGACGACAAGGCCATTTACCTG
GAGCAGCAGTTTATTACCCTTTCGGACGGATTTGTACGCGCGGTGGCCAT
GTCCAAGCAGAACATCACCAACTGCAATGTGCTGGAGGTACTGAAGACCT
ATCCGGAAACTGCCCAGCGACCGGAGAAGCCGGAGGAGCTCAAGCTCTGG
CTGGATGCCATCGAGCTGTCCAGCCAGAAGCTGCGAAAGGACAAGTGAAA
GCTTTCTAGACCAT
BS12933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-RB | 582 | CG4666-PB | 1..582 | 17..598 | 2895 | 99.8 | Plus |
| CG4666-RA | 582 | CG4666-PA | 1..582 | 17..598 | 2895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-RB | 1363 | CG4666-RB | 484..1066 | 17..599 | 2900 | 99.8 | Plus |
| CG4666-RA | 1107 | CG4666-RA | 228..810 | 17..599 | 2900 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6076369..6076951 | 599..17 | 2900 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:24:24 has no hits.
BS12933.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:33 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:01 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 180..760 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:40 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 228..808 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:16 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 180..760 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:56 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 228..808 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:56 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6076371..6076951 | 17..597 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:40 Download gff for
BS12933.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5970404..5970984 | 17..597 | 99 | | Minus |
BS12933.5prime Sequence
612 bp (612 high quality bases) assembled on 2006-10-13
> BS12933.5prime
GAAGTTATCAGTCGACATGTCTTGGCTGGTTGTTTTGTTGATCCTGTACG
TAATCTGGGATGTCAACTACTTCATCCGCTGCGTGTTCACGGTGTTCGCC
GGCCGGCTGTTCCAGCGGAAGCGCAAGGTCACGGACACCACGACGATCTA
TGGACTGTGCACCTCGCAGGACGTGGACATCTTTATCCGGCACATGAACA
ACGCCCGCTATCTGCGCGAACTGGACTTTGCCCGCTTCCATTTCTACGCC
CTCACTGGACTCTATGAGCGCATCCGGGACCGACGCGGCGGTGCCGTCCA
GGGAGCCAGCAGTGTTCGCTACCGCCGCACCATACCCATCTTCCATCCGT
ACAAGATTCAGACCAAGCTGATCTGGTGGGACGACAAGGCCATTTACCTG
GAGCAGCAGTTTATTACCCTTTCGGACGGATTTGTACGCGCGGTGGCCAT
GTCCAAGCAGAACATCACCAACTGCAATGTGCTGGAGGTACTGAAGACCT
ATCCGGAAACTGCCCAGCGACCGGAGAAGCCGGAGGAGCTCAAGCTCTGG
CTGGATGCCATCGAGCTGTCCAGCCAGAAGCTGCGAAAGGACAAGTGAAA
GCTTTCTAGACC
BS12933.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-PA | 582 | CG4666-RA | 1..582 | 17..598 | 2885 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-RB | 1363 | CG4666-RB | 484..1066 | 17..599 | 2900 | 99.8 | Plus |
| CG4666-RA | 1107 | CG4666-RA | 228..810 | 17..599 | 2900 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6076369..6076951 | 599..17 | 2900 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:03:00 has no hits.
BS12933.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:04 Download gff for
BS12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-PA | 1..582 | 17..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:20 Download gff for
BS12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 218..810 | 3..599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:15 Download gff for
BS12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4666-RA | 218..810 | 3..599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:15 Download gff for
BS12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6076369..6076961 | 3..599 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:20 Download gff for
BS12933.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5970402..5970994 | 3..599 | 98 | | Minus |
BS12933.pep Sequence
Translation from 16 to 597
> BS12933.pep
MSWLVVLLILYVIWDVNYFIRCVFTVFAGRLFQRKRKVTDTTTIYGLCTS
QDVDIFIRHMNNARYLRELDFARFHFYALTGLYERIRDRRGGAVQGASSV
RYRRTIPIFHPYKIQTKLIWWDDKAIYLEQQFITLSDGFVRAVAMSKQNI
TNCNVLEVLKTYPETAQRPEKPEELKLWLDAIELSSQKLRKDK*
BS12933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4666-PB | 193 | CG4666-PB | 1..193 | 1..193 | 1013 | 100 | Plus |
| CG4666-PA | 193 | CG4666-PA | 1..193 | 1..193 | 1013 | 100 | Plus |
| CG4660-PA | 261 | CG4660-PA | 9..167 | 1..159 | 356 | 39.6 | Plus |
