Clone Sequence Records
BS12937.3prime Sequence
715 bp (661 high quality bases) assembled on 2006-10-13
> BS12937.3prime
ATGGTCTAGAAAGCTTTCAGCGCAAATTGTGCACGTAATTGACAATCAAA
GGATCATCGAAGCTGGTGGGCACGATTTCGACGGAGTGCACAACAGGCTG
CAAGTGGGCATCGCTGCCGATGTGAGTGAAGCTGGCCAGCTGGACGTCCA
GGTCATCGTGGCCGCCATCTACTAGCACGTACTCGGCCTCCGGCTCTACG
ATGGCCAGCTCCACGGCGGCACTATTGTCGCCGGGCACCTGCTGCTGCTC
GGCAATCGATAGCGTTGCATTCTCATTGTCCTGGGAGAGGGAGATGGCCA
CGTTCGGTGGTGGGGACTCCACTCCGGCCGAACTGGCGTCGATGGCAAAC
AGTTTGGTAGTGGCCGCAGTTGTGCTGCTCTCTGTGGTTGAACTTTCAGG
GGTGACGCCCTCCTCCTCGTCCACCTTTAGCTCCTCGGCTTCCTTTGGCT
GCTCAGTTGTGGTTACCTCCACTTCGGCCTTGTTGTCCTCCCCCTCGTCG
TCCTGCTCCTCGAGATGGCGCTCAATTTCATGGAGTCGCTTGGGTGTTGT
ACTCAGCAGCAGGAGCTTCCCGGACTTCTCTGGCGCTACGGCGCTATCCT
CATGTAAAGTGCCCGGGGCAGGATCAATCAGTATGCTGGCCTCCTCGTCG
CGACTCAAAGCAGGACCCGCCAAAGTTGTGGCCTCCGCGGTGGTGACATT
CCCCTCTTGATCCCG
BS12937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-PA | 810 | CG14565-RA | 112..810 | 715..17 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-RA | 1022 | CG14565-RA | 147..845 | 715..17 | 3495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21743425..21744123 | 17..715 | 3495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:52:42 has no hits.
BS12937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:06 Download gff for
BS12937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-PA | 112..810 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:19 Download gff for
BS12937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 147..850 | 9..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:08:40 Download gff for
BS12937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 147..850 | 9..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:08:40 Download gff for
BS12937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21743420..21744123 | 9..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:19 Download gff for
BS12937.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21736520..21737223 | 9..715 | 99 | | Plus |
BS12937.5prime Sequence
774 bp (729 high quality bases) assembled on 2006-10-13
> BS12937.5prime
GAAGTTATCAGTCGACATGTGGAAAGGACTCGGTTGCGCTCTACTCTGCC
TGGCTGTGGTCCAGGCGGCTGTTATCCGCCCCGGAGGGGATCCGGAGGTT
CCGGAAACCACAACTAGTGCGGTTATCCGGGATCAAGAGGGGAATGTCAC
CACCGCGGAGGCCACAACTTTGGCGGGTCCTGCTTTGAGTCGCGACGAGG
AGGCCAGCATACTGATTGATCCTGCCCCGGGCACTTTACATGAGGATAGC
GCCGTAGCGCCAGAGAAGTCCGGGAAGCTCCTGCTGCTGAGTACAACACC
CAAGCGACTCCATGAAATTGAGCGCCATCTCGAGGAGCAGGACGACGAGG
GGGAGGACAACAAGGCCGAAGTGGAGGTAACCACAACTGAGCAGCCAAAG
GAAGCCGAGGAGCTAAAGGTGGACGAGGAGGAGGGCGTCACCCCTGAAAG
TTCAACCACAGAGAGCAGCACAACTGCGGCCACTACCAAACTGTTTGCCA
TCGACGCCAGTTCGGCCGGAGTGGAGTCCCCACCACCGAACGTGGCCATC
TCCCTCTCCCAGGACAATGAGAATGCAACGCTATCGATTGCCGAGCAGCA
GCAGGTGCCCGGCGACAATAGTGCCGCCGTGGAGCTGGCCATCGTAGAGC
CGGAGGCCGAGTACGTGCTAGTAGATGGCGGCCACGATGACCTGGACGTC
CAGCTGGCCAGCTTCACTCACATCGGCAGCGATGCCCACTTGCAGCCTGT
TGTGCACTCCGTCGAAATCGTGCC
BS12937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-PA | 810 | CG14565-RA | 1..758 | 17..774 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-RA | 1022 | CG14565-RA | 34..793 | 15..774 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21743477..21744236 | 774..15 | 3800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:16:40 has no hits.
BS12937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:06 Download gff for
BS12937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-PA | 1..758 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:24:24 Download gff for
BS12937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 20..793 | 2..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:24 Download gff for
BS12937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 20..793 | 2..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:24 Download gff for
BS12937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21743477..21744234 | 17..774 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:24:24 Download gff for
BS12937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21736577..21737334 | 17..774 | 100 | -> | Minus |
BS12937.complete Sequence
842 bp assembled on 2006-11-01
GenBank Submission: FJ637336
> BS12937.complete
GAAGTTATCAGTCGACATGTGGAAAGGACTCGGTTGCGCTCTACTCTGCC
TGGCTGTGGTCCAGGCGGCTGTTATCCGCCCCGGAGGGGATCCGGAGGTT
CCGGAAACCACAACTAGTGCGGTTATCCGGGATCAAGAGGGGAATGTCAC
CACCGCGGAGGCCACAACTTTGGCGGGTCCTGCTTTGAGTCGCGACGAGG
AGGCCAGCATACTGATTGATCCTGCCCCGGGCACTTTACATGAGGATAGC
GCCGTAGCGCCAGAGAAGTCCGGGAAGCTCCTGCTGCTGAGTACAACACC
CAAGCGACTCCATGAAATTGAGCGCCATCTCGAGGAGCAGGACGACGAGG
GGGAGGACAACAAGGCCGAAGTGGAGGTAACCACAACTGAGCAGCCAAAG
GAAGCCGAGGAGCTAAAGGTGGACGAGGAGGAGGGCGTCACCCCTGAAAG
TTCAACCACAGAGAGCAGCACAACTGCGGCCACTACCAAACTGTTTGCCA
TCGACGCCAGTTCGGCCGGAGTGGAGTCCCCACCACCGAACGTGGCCATC
TCCCTCTCCCAGGACAATGAGAATGCAACGCTATCGATTGCCGAGCAGCA
GCAGGTGCCCGGCGACAATAGTGCCGCCGTGGAGCTGGCCATCGTAGAGC
CGGAGGCCGAGTACGTGCTAGTAGATGGCGGCCACGATGACCTGGACGTC
CAGCTGGCCAGCTTCACTCACATCGGCAGCGATGCCCACTTGCAGCCTGT
TGTGCACTCCGTCGAAATCGTGCCCACCAGCTTCGATGATCCTTTGATTG
TCAATTACGTGCACAATTTGCGCTGAAAGCTTTCTAGACCAT
BS12937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-RA | 810 | CG14565-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-RA | 1022 | CG14565-RA | 34..845 | 15..826 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21743425..21744236 | 826..15 | 4060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:18:30 has no hits.
BS12937.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:12 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:18 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 15..845 | 2..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:47 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 36..844 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:13 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 15..845 | 2..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:28 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14565-RA | 36..844 | 17..825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:28 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21743426..21744234 | 17..825 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:47 Download gff for
BS12937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21736526..21737334 | 17..825 | 100 | | Minus |
BS12937.pep Sequence
Translation from 16 to 825
> BS12937.pep
MWKGLGCALLCLAVVQAAVIRPGGDPEVPETTTSAVIRDQEGNVTTAEAT
TLAGPALSRDEEASILIDPAPGTLHEDSAVAPEKSGKLLLLSTTPKRLHE
IERHLEEQDDEGEDNKAEVEVTTTEQPKEAEELKVDEEEGVTPESSTTES
STTAATTKLFAIDASSAGVESPPPNVAISLSQDNENATLSIAEQQQVPGD
NSAAVELAIVEPEAEYVLVDGGHDDLDVQLASFTHIGSDAHLQPVVHSVE
IVPTSFDDPLIVNYVHNLR*
BS12937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14565-PA | 269 | CG14565-PA | 1..269 | 1..269 | 1356 | 100 | Plus |
