Clone Sequence Records
BS12939.3prime Sequence
405 bp (405 high quality bases) assembled on 2006-10-13
> BS12939.3prime
ATGGTCTAGAAAGCTTTTAGTCGTCGCTGGACTCGACATTCTCGGTCTGC
AAGTTCTTGAACGTGGACACCGGCACATAGGTCACGTAAGTGTACAGCTT
GTTGGGGGAGTCCTCATCGTCGTTGCGGCGACGCGCCAGGCGCACGCGAA
TGCGGAATGGAGTGGACCTGATACCCTTGGACCAGATGTGCTTGTTCAGA
CGGGTGTCGATCCTCACATCGGTGGTGCCCATCTCCCGCTCGGCGAACTT
GCGGATCTCCTTGATGGCGCGGGGTGCGCGCTTCTTGAAGCCGATGTTGT
GGACACGCTTGGCCAAGTGAATGGTGCACTCGCGCGTCACGACTTCGTTG
ATCGCGGATTTGTTGATTTTCTCACCCTTGGTCTTGGTCATGTCGACTGA
TAACT
BS12939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1821-PC | 375 | RpL31-RC | 1..375 | 391..17 | 1875 | 100 | Minus |
CG1821-PB | 375 | RpL31-RB | 1..375 | 391..17 | 1875 | 100 | Minus |
CG1821-PA | 375 | RpL31-RA | 1..375 | 391..17 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 509 | CG1821-RA | 73..447 | 391..17 | 1875 | 100 | Minus |
RpL31-RB | 577 | CG1821-RB | 141..515 | 391..17 | 1875 | 100 | Minus |
RpL31-RC | 522 | CG1821-RC | 86..460 | 391..17 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9587483..9587708 | 391..166 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 9587774..9587927 | 170..17 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:20:12 has no hits.
BS12939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:08 Download gff for
BS12939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1821-PA | 1..375 | 17..391 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:36:58 Download gff for
BS12939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 13..399 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:00 Download gff for
BS12939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 13..399 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:00 Download gff for
BS12939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9587476..9587706 | 168..399 | 98 | -> | Minus |
2R | 9587777..9587929 | 13..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:36:58 Download gff for
BS12939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5474981..5475211 | 168..399 | 98 | -> | Minus |
arm_2R | 5475282..5475434 | 13..167 | 98 | | Minus |
BS12939.5prime Sequence
405 bp (405 high quality bases) assembled on 2006-10-13
> BS12939.5prime
GAAGTTATCAGTCGACATGACCAAGACCAAGGGTGAGAAAATCAACAAAT
CCGCGATCAACGAAGTCGTGACGCGCGAGTGCACCATTCACTTGGCCAAG
CGTGTCCACAACATCGGCTTCAAGAAGCGCGCACCCCGCGCCATCAAGGA
GATCCGCAAGTTCGCCGAGCGGGAGATGGGCACCACCGATGTGAGGATCG
ACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTCCACTCCA
TTCCGCATTCGCGTGCGCCTGGCGCGTCGCCGCAACGACGATGAGGACTC
CCCCAACAAGCTGTACACTTACGTGACCTATGTGCCGGTGTCCACGTTCA
AGAACTTGCAGACCGAGAATGTCGAGTCCAGCGACGACTAAAAGCTTTCT
AGACC
BS12939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1821-PC | 375 | RpL31-RC | 1..375 | 17..391 | 1875 | 100 | Plus |
CG1821-PB | 375 | RpL31-RB | 1..375 | 17..391 | 1875 | 100 | Plus |
CG1821-PA | 375 | RpL31-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 509 | CG1821-RA | 73..447 | 17..391 | 1875 | 100 | Plus |
RpL31-RB | 577 | CG1821-RB | 141..515 | 17..391 | 1875 | 100 | Plus |
RpL31-RC | 522 | CG1821-RC | 86..460 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9587483..9587708 | 17..242 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 9587774..9587927 | 238..391 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:13:25 has no hits.
BS12939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:08 Download gff for
BS12939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1821-PA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:01 Download gff for
BS12939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:27:20 Download gff for
BS12939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..395 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:27:20 Download gff for
BS12939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9587476..9587706 | 9..240 | 98 | -> | Plus |
2R | 9587777..9587929 | 241..395 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:01 Download gff for
BS12939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5474981..5475211 | 9..240 | 98 | -> | Plus |
arm_2R | 5475282..5475434 | 241..395 | 98 | | Plus |
BS12939.complete Sequence
407 bp assembled on 2006-11-01
GenBank Submission: FJ637337
> BS12939.complete
GAAGTTATCAGTCGACATGACCAAGACCAAGGGTGAGAAAATCAACAAAT
CCGCGATCAACGAAGTCGTGACGCGCGAGTGCACCATTCACTTGGCCAAG
CGTGTCCACAACATCGGCTTCAAGAAGCGCGCACCCCGCGCCATCAAGGA
GATCCGCAAGTTCGCCGAGCGGGAGATGGGCACCACCGATGTGAGGATCG
ACACCCGTCTGAACAAGCACATCTGGTCCAAGGGTATCAGGTCCACTCCA
TTCCGCATTCGCGTGCGCCTGGCGCGTCGCCGCAACGACGATGAGGACTC
CCCCAACAAGCTGTACACTTACGTGACCTATGTGCCGGTGTCCACGTTCA
AGAACTTGCAGACCGAGAATGTCGAGTCCAGCGACGACTAAAAGCTTTCT
AGACCAT
BS12939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 375 | CG1821-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
RpL31-RB | 375 | CG1821-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
RpL31-RC | 375 | CG1821-PC | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-RA | 509 | CG1821-RA | 73..447 | 17..391 | 1875 | 100 | Plus |
RpL31-RB | 577 | CG1821-RB | 141..515 | 17..391 | 1875 | 100 | Plus |
RpL31-RC | 522 | CG1821-RC | 86..460 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9587483..9587708 | 17..242 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 9587774..9587927 | 238..391 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:57:42 has no hits.
BS12939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:14 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RA | 1..375 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:19 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:33 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 86..458 | 17..389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:14 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 79..462 | 9..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:32 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL31-RC | 86..458 | 17..389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:32 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9587483..9587706 | 17..240 | 100 | -> | Plus |
2R | 9587777..9587925 | 241..389 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:33 Download gff for
BS12939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5474988..5475211 | 17..240 | 100 | -> | Plus |
arm_2R | 5475282..5475430 | 241..389 | 100 | | Plus |
BS12939.pep Sequence
Translation from 16 to 390
> BS12939.pep
MTKTKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFA
EREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLY
TYVTYVPVSTFKNLQTENVESSDD*
BS12939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL31-PA | 124 | CG1821-PA | 1..124 | 1..124 | 639 | 100 | Plus |
RpL31-PB | 124 | CG1821-PB | 1..124 | 1..124 | 639 | 100 | Plus |
RpL31-PC | 124 | CG1821-PC | 1..124 | 1..124 | 639 | 100 | Plus |