Clone BS12941 Report

Search the DGRC for BS12941

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG31249-RA
Protein status:BS12941.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12941.3prime Sequence

599 bp (596 high quality bases) assembled on 2006-10-13

> BS12941.3prime
ATGGTCTAGAAAGCTTCTAGAATCCCACTTTCCCCAGCTTGGTATCAGTC
TTTGGATTGGCCGTGATGTTCTGCACCGCCACAATGGTCTCATTGATGTG
TGTCTGCAGCTCGCGTAGGCTCTGGATCTGGAGAAGACGTAGTATGCGCA
TGGGCAGGTCCAGGGCAGAGTCGTTGGACGAGACGACGTCGTTTCCCTTG
TCAAAAGGGAAGGGTTTACCCACTACCGGCTTGCGATCCTTGGCGGCGGG
CGAGAGGCGTTCGTGCACCACGCGAGCGATAGCCTCCAGCTGCAACAGAT
GGTTCGGGTGGTGCGGCACATTCAGTTTGCTGGCCAGCAGCCGGACTCCA
TCCACGAACGCTTTTTCCTGAGTATTAATATTTCCATCGAAAATAGCCTG
GACCCTTTGTTGGGACTGCTTGCCATTGCTTTGGGGTGGCACCTGTTTGG
TGTTAATCGAGGCAAACTGATCAGGATCATCGAGGAAGTCCAGGCGCACA
GCATAGCTGACAATCCAGGCCAGCTGCTCCTGCCGCGTCTCCAGGGGCGG
CATTGCTCAAATCGGCACAGTACTTTAAGTAACCCTCCTTCCAGATCTC

BS12941.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-PA 753 CG31249-RA 217..753 553..17 2685 100 Minus
CG31249-PA 753 CG31249-RA 172..217 599..554 230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 1176 CG31249-RA 278..860 599..16 2895 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17686005..17686361 16..372 1785 100 Plus
3R 32079331 3R 17686511..17686736 373..599 1085 99.6 Plus
Blast to na_te.dros performed on 2015-01-31 10:20:21 has no hits.

BS12941.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:09 Download gff for BS12941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-PA 172..753 17..599 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:01 Download gff for BS12941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 278..865 11..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:02 Download gff for BS12941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 278..865 11..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:02 Download gff for BS12941.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17686000..17686361 11..372 99 <- Plus
3R 17686511..17686736 373..599 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:01 Download gff for BS12941.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13511722..13512083 11..372 99 <- Plus
arm_3R 13512233..13512458 373..599 99   Plus

BS12941.5prime Sequence

761 bp (752 high quality bases) assembled on 2006-10-13

> BS12941.5prime
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAAAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTTGACAAGGGAAACGACG
TCGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCCTGCGCATACTACGT
CTTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGAC
CATTGTGGCGGTGCAGAACATTCACGGCCAATCCAAAGACTGATACCAAG
CTGGGGAAAGT

BS12941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-PA 753 CG31249-RA 1..567 17..583 2810 99.8 Plus
CG31249-PA 753 CG31249-RA 564..704 581..721 680 99.2 Plus
CG31249-PA 753 CG31249-RA 704..743 722..761 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 1176 CG31249-RA 106..849 16..761 3650 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17686016..17686361 761..414 1625 99.1 Minus
3R 32079331 3R 17686511..17686838 413..86 1625 99.7 Minus
3R 32079331 3R 17686896..17686966 86..16 355 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:52:27 has no hits.

BS12941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:10 Download gff for BS12941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-PA 1..743 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:57 Download gff for BS12941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 106..849 16..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:03 Download gff for BS12941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 106..849 16..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:03 Download gff for BS12941.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17686016..17686361 414..761 99 <- Minus
3R 17686511..17686837 87..413 99 <- Minus
3R 17686896..17686966 16..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:57 Download gff for BS12941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13511738..13512083 414..761 99 <- Minus
arm_3R 13512233..13512559 87..413 99 <- Minus
arm_3R 13512618..13512688 16..86 100   Minus

BS12941.complete Sequence

785 bp assembled on 2006-11-01

GenBank Submission: FJ638849

> BS12941.complete
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAAAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGT
CGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTC
TTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACC
ATTGTGGCGGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCT
GGGGAAAGTGGGATTCTAGAAGCTTTCTAGACCAT

BS12941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 753 CG31249-PA 1..753 17..769 3750 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-RA 1176 CG31249-RA 106..860 16..770 3760 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17686005..17686361 770..414 1785 100 Minus
3R 32079331 3R 17686511..17686838 413..86 1625 99.7 Minus
3R 32079331 3R 17686896..17686966 86..16 355 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:14:14 has no hits.

BS12941.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:15 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 1..753 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:21 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 96..855 16..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:46 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 107..859 17..769 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:15 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 96..855 16..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:33 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
CG31249-RA 107..859 17..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:33 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17686511..17686837 87..413 99 <- Minus
3R 17686896..17686965 17..86 100   Minus
3R 17686006..17686361 414..769 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:46 Download gff for BS12941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13511728..13512083 414..769 100 <- Minus
arm_3R 13512233..13512559 87..413 99 <- Minus
arm_3R 13512618..13512687 17..86 100   Minus

BS12941.pep Sequence

Translation from 16 to 768

> BS12941.pep
MLSLKMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCK
LRTVDNPEIWKEGYLKYCADLSMPPLETRQEQLAWIVSYAVRLDFLDDPD
QFASINTKQVPPQSNGKQSQQRVQAIFDGNINTQEKAFVDGVRLLASKLN
VPHHPNHLLQLEAIARVVHERLSPAAKDRKPVVGKPFPFDKGNDVVSSND
SALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDTKLGKVGF
*

BS12941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31249-PA 250 CG31249-PA 1..250 1..250 1286 100 Plus