Clone Sequence Records
BS12941.3prime Sequence
599 bp (596 high quality bases) assembled on 2006-10-13
> BS12941.3prime
ATGGTCTAGAAAGCTTCTAGAATCCCACTTTCCCCAGCTTGGTATCAGTC
TTTGGATTGGCCGTGATGTTCTGCACCGCCACAATGGTCTCATTGATGTG
TGTCTGCAGCTCGCGTAGGCTCTGGATCTGGAGAAGACGTAGTATGCGCA
TGGGCAGGTCCAGGGCAGAGTCGTTGGACGAGACGACGTCGTTTCCCTTG
TCAAAAGGGAAGGGTTTACCCACTACCGGCTTGCGATCCTTGGCGGCGGG
CGAGAGGCGTTCGTGCACCACGCGAGCGATAGCCTCCAGCTGCAACAGAT
GGTTCGGGTGGTGCGGCACATTCAGTTTGCTGGCCAGCAGCCGGACTCCA
TCCACGAACGCTTTTTCCTGAGTATTAATATTTCCATCGAAAATAGCCTG
GACCCTTTGTTGGGACTGCTTGCCATTGCTTTGGGGTGGCACCTGTTTGG
TGTTAATCGAGGCAAACTGATCAGGATCATCGAGGAAGTCCAGGCGCACA
GCATAGCTGACAATCCAGGCCAGCTGCTCCTGCCGCGTCTCCAGGGGCGG
CATTGCTCAAATCGGCACAGTACTTTAAGTAACCCTCCTTCCAGATCTC
BS12941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-PA | 753 | CG31249-RA | 217..753 | 553..17 | 2685 | 100 | Minus |
CG31249-PA | 753 | CG31249-RA | 172..217 | 599..554 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 1176 | CG31249-RA | 278..860 | 599..16 | 2895 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17686005..17686361 | 16..372 | 1785 | 100 | Plus |
3R | 32079331 | 3R | 17686511..17686736 | 373..599 | 1085 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:20:21 has no hits.
BS12941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:09 Download gff for
BS12941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-PA | 172..753 | 17..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:01 Download gff for
BS12941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 278..865 | 11..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:02 Download gff for
BS12941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 278..865 | 11..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:02 Download gff for
BS12941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17686000..17686361 | 11..372 | 99 | <- | Plus |
3R | 17686511..17686736 | 373..599 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:01 Download gff for
BS12941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13511722..13512083 | 11..372 | 99 | <- | Plus |
arm_3R | 13512233..13512458 | 373..599 | 99 | | Plus |
BS12941.5prime Sequence
761 bp (752 high quality bases) assembled on 2006-10-13
> BS12941.5prime
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAAAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTTGACAAGGGAAACGACG
TCGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCCTGCGCATACTACGT
CTTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGAC
CATTGTGGCGGTGCAGAACATTCACGGCCAATCCAAAGACTGATACCAAG
CTGGGGAAAGT
BS12941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-PA | 753 | CG31249-RA | 1..567 | 17..583 | 2810 | 99.8 | Plus |
CG31249-PA | 753 | CG31249-RA | 564..704 | 581..721 | 680 | 99.2 | Plus |
CG31249-PA | 753 | CG31249-RA | 704..743 | 722..761 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 1176 | CG31249-RA | 106..849 | 16..761 | 3650 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17686016..17686361 | 761..414 | 1625 | 99.1 | Minus |
3R | 32079331 | 3R | 17686511..17686838 | 413..86 | 1625 | 99.7 | Minus |
3R | 32079331 | 3R | 17686896..17686966 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:52:27 has no hits.
BS12941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:10 Download gff for
BS12941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-PA | 1..743 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:15:57 Download gff for
BS12941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 106..849 | 16..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:03 Download gff for
BS12941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 106..849 | 16..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:03 Download gff for
BS12941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17686016..17686361 | 414..761 | 99 | <- | Minus |
3R | 17686511..17686837 | 87..413 | 99 | <- | Minus |
3R | 17686896..17686966 | 16..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:15:57 Download gff for
BS12941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13511738..13512083 | 414..761 | 99 | <- | Minus |
arm_3R | 13512233..13512559 | 87..413 | 99 | <- | Minus |
arm_3R | 13512618..13512688 | 16..86 | 100 | | Minus |
BS12941.complete Sequence
785 bp assembled on 2006-11-01
GenBank Submission: FJ638849
> BS12941.complete
GAAGTTATCAGTCGACATGCTGTCGCTCAAGATGAAACTCGAGGTACTGG
GTCGTCCCGATGTTGACATCCCGGTGGTGATGAGCGACCGCAAGGAATTC
GCCAACACAGTCCTCTGGTTGGAGGACCAAAAGATCCGGCTTTACTCCAT
AGAGGATCGCTGTAAGCTGCGCACTGTCGACAACCCTGAGATCTGGAAGG
AGGGTTACTTAAAGTACTGTGCCGATTTGAGCATGCCGCCCCTGGAGACG
CGGCAGGAGCAGCTGGCCTGGATTGTCAGCTATGCTGTGCGCCTGGACTT
CCTCGATGATCCTGATCAGTTTGCCTCGATTAACACCAAACAGGTGCCAC
CCCAAAGCAATGGCAAGCAGTCCCAACAAAGGGTCCAGGCTATTTTCGAT
GGAAATATTAATACTCAGGAAAAAGCGTTCGTGGATGGAGTCCGGCTGCT
GGCCAGCAAACTGAATGTGCCGCACCACCCGAACCATCTGTTGCAGCTGG
AGGCTATCGCTCGCGTGGTGCACGAACGCCTCTCGCCCGCCGCCAAGGAT
CGCAAGCCGGTAGTGGGTAAACCCTTCCCTTTTGACAAGGGAAACGACGT
CGTCTCGTCCAACGACTCTGCCCTGGACCTGCCCATGCGCATACTACGTC
TTCTCCAGATCCAGAGCCTACGCGAGCTGCAGACACACATCAATGAGACC
ATTGTGGCGGTGCAGAACATCACGGCCAATCCAAAGACTGATACCAAGCT
GGGGAAAGTGGGATTCTAGAAGCTTTCTAGACCAT
BS12941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 753 | CG31249-PA | 1..753 | 17..769 | 3750 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-RA | 1176 | CG31249-RA | 106..860 | 16..770 | 3760 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17686005..17686361 | 770..414 | 1785 | 100 | Minus |
3R | 32079331 | 3R | 17686511..17686838 | 413..86 | 1625 | 99.7 | Minus |
3R | 32079331 | 3R | 17686896..17686966 | 86..16 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:14:14 has no hits.
BS12941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:15 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 1..753 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:21 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 96..855 | 16..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:46 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 107..859 | 17..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:15 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 96..855 | 16..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:33 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31249-RA | 107..859 | 17..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:33 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17686511..17686837 | 87..413 | 99 | <- | Minus |
3R | 17686896..17686965 | 17..86 | 100 | | Minus |
3R | 17686006..17686361 | 414..769 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:46 Download gff for
BS12941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13511728..13512083 | 414..769 | 100 | <- | Minus |
arm_3R | 13512233..13512559 | 87..413 | 99 | <- | Minus |
arm_3R | 13512618..13512687 | 17..86 | 100 | | Minus |
BS12941.pep Sequence
Translation from 16 to 768
> BS12941.pep
MLSLKMKLEVLGRPDVDIPVVMSDRKEFANTVLWLEDQKIRLYSIEDRCK
LRTVDNPEIWKEGYLKYCADLSMPPLETRQEQLAWIVSYAVRLDFLDDPD
QFASINTKQVPPQSNGKQSQQRVQAIFDGNINTQEKAFVDGVRLLASKLN
VPHHPNHLLQLEAIARVVHERLSPAAKDRKPVVGKPFPFDKGNDVVSSND
SALDLPMRILRLLQIQSLRELQTHINETIVAVQNITANPKTDTKLGKVGF
*
BS12941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31249-PA | 250 | CG31249-PA | 1..250 | 1..250 | 1286 | 100 | Plus |