Clone BS12943 Report

Search the DGRC for BS12943

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptRpS24-RA
Protein status:BS12943.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12943.5prime Sequence

426 bp (426 high quality bases) assembled on 2006-10-13

> BS12943.5prime
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGTAAAAGCTTTCTAGACC

BS12943.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3751-PA 396 RpS24-RA 1..396 17..412 1955 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 646 CG3751-RA 77..472 17..412 1965 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22640700..22641095 412..17 1965 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:15 has no hits.

BS12943.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:11 Download gff for BS12943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3751-PA 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:55 Download gff for BS12943.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 8..416 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:11 Download gff for BS12943.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 8..416 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:11 Download gff for BS12943.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22640698..22641104 8..416 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:55 Download gff for BS12943.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18528203..18528609 8..416 98   Minus

BS12943.3prime Sequence

426 bp (426 high quality bases) assembled on 2006-10-13

> BS12943.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGCCAGTGCCGATCTTGGCCTTGGCA
GTACCGCGCACCTTCTTCATCCTGTTGCGACGCTCCTTGCGCTGCTTGCG
GGTCTGCTTCTTCTGTTCGAAGAGGCCGTGACGGGCCAGGCGGTACTTGG
GCTCGAACTTCTTGGCGAAGTCCAGGGTGTCGTAGATGAGGGCAAAGCCG
GTGGAGCGGCCGCCACCGAAGTTGGTGCGGAATCCGAAGGCGAAGACCAC
ATCGGGGGTGACCTTGTACATGGCGGCGAGCTTCTCGCGGATCTCGGTCT
TGTTCACGGACGACAATCCTGGGTGGAGGACATCGCAGACCATCTGTTTC
CTGGCGAGCAGGCGGTTGGTCATGAACTTGCGGGTGCGGATGGTAGCGGT
TGTACCGGACATGTCGACTGATAACT

BS12943.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3751-PA 396 RpS24-RA 1..396 412..17 1955 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 646 CG3751-RA 77..472 412..17 1965 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22640700..22641095 17..412 1965 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 17:53:02 has no hits.

BS12943.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:11 Download gff for BS12943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3751-PA 1..396 17..412 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:28 Download gff for BS12943.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 13..421 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:01 Download gff for BS12943.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 13..421 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:01 Download gff for BS12943.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22640698..22641104 13..421 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:28 Download gff for BS12943.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18528203..18528609 13..421 98   Plus

BS12943.complete Sequence

428 bp assembled on 2006-11-01

GenBank Submission: FJ637338

> BS12943.complete
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGTAAAAGCTTTCTAGACCAT

BS12943.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 396 CG3751-PA 1..396 17..412 1965 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 646 CG3751-RA 77..472 17..412 1965 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22640700..22641095 412..17 1965 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 15:58:06 has no hits.

BS12943.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:16 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:23 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 67..473 8..416 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:35 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 77..470 17..410 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:17 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 67..473 8..416 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:05 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 77..470 17..410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:05 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22640702..22641095 17..410 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:35 Download gff for BS12943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18528207..18528600 17..410 99   Minus

BS12943.pep Sequence

Translation from 16 to 411

> BS12943.pep
MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYK
VTPDVVFAFGFRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLARHGLFEQ
KKQTRKQRKERRNRMKKVRGTAKAKIGTGKK*

BS12943.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-PA 131 CG3751-PA 1..131 1..131 671 100 Plus