Clone Sequence Records
BS12943.5prime Sequence
426 bp (426 high quality bases) assembled on 2006-10-13
> BS12943.5prime
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGTAAAAGCTTTCTAGACC
BS12943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3751-PA | 396 | RpS24-RA | 1..396 | 17..412 | 1955 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 646 | CG3751-RA | 77..472 | 17..412 | 1965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22640700..22641095 | 412..17 | 1965 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:15 has no hits.
BS12943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:11 Download gff for
BS12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3751-PA | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:33:55 Download gff for
BS12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 8..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:11 Download gff for
BS12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 8..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:11 Download gff for
BS12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22640698..22641104 | 8..416 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:33:55 Download gff for
BS12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18528203..18528609 | 8..416 | 98 | | Minus |
BS12943.3prime Sequence
426 bp (426 high quality bases) assembled on 2006-10-13
> BS12943.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGCCAGTGCCGATCTTGGCCTTGGCA
GTACCGCGCACCTTCTTCATCCTGTTGCGACGCTCCTTGCGCTGCTTGCG
GGTCTGCTTCTTCTGTTCGAAGAGGCCGTGACGGGCCAGGCGGTACTTGG
GCTCGAACTTCTTGGCGAAGTCCAGGGTGTCGTAGATGAGGGCAAAGCCG
GTGGAGCGGCCGCCACCGAAGTTGGTGCGGAATCCGAAGGCGAAGACCAC
ATCGGGGGTGACCTTGTACATGGCGGCGAGCTTCTCGCGGATCTCGGTCT
TGTTCACGGACGACAATCCTGGGTGGAGGACATCGCAGACCATCTGTTTC
CTGGCGAGCAGGCGGTTGGTCATGAACTTGCGGGTGCGGATGGTAGCGGT
TGTACCGGACATGTCGACTGATAACT
BS12943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3751-PA | 396 | RpS24-RA | 1..396 | 412..17 | 1955 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 646 | CG3751-RA | 77..472 | 412..17 | 1965 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22640700..22641095 | 17..412 | 1965 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:53:02 has no hits.
BS12943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:11 Download gff for
BS12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3751-PA | 1..396 | 17..412 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:28 Download gff for
BS12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 13..421 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:01 Download gff for
BS12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 13..421 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:01 Download gff for
BS12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22640698..22641104 | 13..421 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:28 Download gff for
BS12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18528203..18528609 | 13..421 | 98 | | Plus |
BS12943.complete Sequence
428 bp assembled on 2006-11-01
GenBank Submission: FJ637338
> BS12943.complete
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGTAAAAGCTTTCTAGACCAT
BS12943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 396 | CG3751-PA | 1..396 | 17..412 | 1965 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 646 | CG3751-RA | 77..472 | 17..412 | 1965 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22640700..22641095 | 412..17 | 1965 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:58:06 has no hits.
BS12943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:16 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:23 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 67..473 | 8..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:35 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 77..470 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:17 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 67..473 | 8..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:05 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 77..470 | 17..410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:05 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22640702..22641095 | 17..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:35 Download gff for
BS12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18528207..18528600 | 17..410 | 99 | | Minus |
BS12943.pep Sequence
Translation from 16 to 411
> BS12943.pep
MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYK
VTPDVVFAFGFRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLARHGLFEQ
KKQTRKQRKERRNRMKKVRGTAKAKIGTGKK*
BS12943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-PA | 131 | CG3751-PA | 1..131 | 1..131 | 671 | 100 | Plus |