Clone BS12945 Report

Search the DGRC for BS12945

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG12920-RA
Protein status:BS12945.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12945.3prime Sequence

744 bp (641 high quality bases) assembled on 2006-10-13

> BS12945.3prime
ATGGTCTAGAAAGCTTCTACTGCATCAGGATGTGCTCGGCAATGGAGCTG
AGCTTGCGATTCTTGTGCTTGGCTCGTCGCCTTTCGGCTTGGAGGTTGAT
CTCATTCTGGGAATCCTCAGCGGCAGATTCCTCGGTGACTGCCTGCTCCT
CCTGTTGCTGATCAGCCTCCTGGTGTGCCTCCGACTCCGGATTTTCCTCG
CCGTTGTCGTTCTCCACGAAAATGCACTCGGGATTGACGGCAGCACACTC
GCCAAAGCTGGTGGCCCTGGCCATAGGATTTCTGGCATTGGTGTACTTCT
CAAAGAAACCGCGACCCACAATGCGGAAAGCCATGCTGGTCAAGGGATTC
AACTTGGATCTAAACTCCATTTCGCAGACAAATCGGCGTCGGCACGCCTT
TGAGTCCAGGCCCAAAAAGGCGAACATAAAATCGGCAATCTGCTCTTCGG
CGGGCATTTGGCGAGCCACGCTCTCTGAAATTTCCTCATCCACAATCTCC
ACATGCTCTTCCTCCTGCTCATCTTGGATCAAATGGGCGTTATCTGCAGC
GCTACGGCGTCCGCGACGGCGCGTGTCTACGGGACCAGATGGGCCACTTG
GTCCAGAGGGAGATTCGCTATGGTAGTCGCCATGCACATCAGAGACAATG
TCCGATCCAGCATAGCTGCTGTATCCGGAATAGGGCTCGAAACTGGCGCC
GGGAGTCAAAGATGAAGGAGCATCATAGTGCTCCAAGTGATCGT

BS12945.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-PA 1119 CG12920-RA 434..1119 702..17 3430 100 Minus
CG12920-PA 1119 CG12920-RA 392..428 744..708 160 97.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1307 CG12920-RA 476..1205 744..15 3590 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10070540..10070965 440..15 2130 100 Minus
2R 25286936 2R 10070176..10070480 744..440 1435 98 Minus
Blast to na_te.dros performed on 2015-01-30 18:03:22 has no hits.

BS12945.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:13 Download gff for BS12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-PA 392..1119 17..744 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:28 Download gff for BS12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 476..1217 7..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:54 Download gff for BS12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 476..1217 7..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:54 Download gff for BS12945.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10070176..10070479 441..744 99 -> Minus
2R 10070540..10070977 7..440 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:28 Download gff for BS12945.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5957681..5957984 441..744 99 -> Minus
arm_2R 5958045..5958482 7..440 99   Minus

BS12945.5prime Sequence

708 bp (685 high quality bases) assembled on 2006-10-13

> BS12945.5prime
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCCGCCAATGCCC
GCCGAAGA

BS12945.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-PA 1119 CG12920-RA 1..673 17..689 3365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1307 CG12920-RA 84..776 16..708 3420 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10070129..10070476 361..708 1695 99.1 Plus
2R 25286936 2R 10069189..10069385 16..212 985 100 Plus
2R 25286936 2R 10069920..10070067 213..360 740 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:20:43 has no hits.

BS12945.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:13 Download gff for BS12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-PA 1..691 17..707 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:50 Download gff for BS12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 80..775 9..707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:13 Download gff for BS12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 80..775 9..707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:13 Download gff for BS12945.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10069186..10069385 14..212 99 -> Plus
2R 10069920..10070067 213..360 100 -> Plus
2R 10070129..10070475 361..707 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:50 Download gff for BS12945.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5956691..5956890 14..212 99 -> Plus
arm_2R 5957425..5957572 213..360 100 -> Plus
arm_2R 5957634..5957980 361..707 99   Plus

BS12945.complete Sequence

1151 bp assembled on 2006-11-01

GenBank Submission: FJ637339

> BS12945.complete
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCGCCAAATGCCC
GCCGAAGAGCAGATTGCCGATTTTATGTTCGCCTTTTTGGGCCTGGACTC
AAAGGCGTGCCGACGCCGATTTGTCTGCGAAATGGAGTTTAGATCCAAGT
TGAATCCCTTGACCAGCATGGCTTTCCGCATTGTGGGTCGCGGTTTCTTT
GAGAAGTACACCAATGCCAGAAATCCTATGGCCAGGGCCACCAGCTTTGG
CGAGTGTGCTGCCGTCAATCCCGAGTGCATTTTCGTGGAGAACGACAACG
GCGAGGAAAATCCGGAGTCGGAGGCACACCAGGAGGCTGATCAGCAACAG
GAGGAGCAGGCAGTCACCGAGGAATCTGCCGCTGAGGATTCCCAGAATGA
GATCAACCTCCAAGCCGAAAGGCGACGAGCCAAGCACAAGAATCGCAAGC
TCAGCTCCATTGCCGAGCACATCCTGATGCAGTAGAAGCTTTCTAGACCA
T

BS12945.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1119 CG12920-PA 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1307 CG12920-RA 84..1205 16..1137 5610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10070540..10070965 712..1137 2130 100 Plus
2R 25286936 2R 10070129..10070480 361..712 1760 100 Plus
2R 25286936 2R 10069189..10069385 16..212 985 100 Plus
2R 25286936 2R 10069920..10070067 213..360 740 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:19:20 has no hits.

BS12945.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:17 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 1..1119 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:10 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 82..1200 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:37 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 85..1203 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:18 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 77..1214 9..1145 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:25 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 85..1203 17..1135 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:25 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10069190..10069385 17..212 100 -> Plus
2R 10069920..10070067 213..360 100 -> Plus
2R 10070129..10070479 361..711 100 -> Plus
2R 10070540..10070963 712..1135 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:37 Download gff for BS12945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5956695..5956890 17..212 100 -> Plus
arm_2R 5957425..5957572 213..360 100 -> Plus
arm_2R 5957634..5957984 361..711 100 -> Plus
arm_2R 5958045..5958468 712..1135 100   Plus

BS12945.pep Sequence

Translation from 16 to 1134

> BS12945.pep
MHKNTIWYGAVLLVVYFTLVFCEETKNEEAPAQLDNQVEDTWENLGRELM
EFEGRTRRHRHHMFWYRHLWPIAIAYWIKVKVVIVSFFVGSAIYLGLRYF
WPHARCNQEIILDHPPSSFSHHDHIPYSLDHDHSEHYDAPSSFDSGASFE
PYSGYSSYAGSDIVSDVHGDYHSESPSGPSGPSGPVDTRRRGRRSAADNA
HLIQDEQEEEHVEIVDEEISESVARQMPAEEQIADFMFAFLGLDSKACRR
RFVCEMEFRSKLNPLTSMAFRIVGRGFFEKYTNARNPMARATSFGECAAV
NPECIFVENDNGEENPESEAHQEADQQQEEQAVTEESAAEDSQNEINLQA
ERRRAKHKNRKLSSIAEHILMQ*

BS12945.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-PA 372 CG12920-PA 1..372 1..372 1990 100 Plus