Clone Sequence Records
BS12945.3prime Sequence
744 bp (641 high quality bases) assembled on 2006-10-13
> BS12945.3prime
ATGGTCTAGAAAGCTTCTACTGCATCAGGATGTGCTCGGCAATGGAGCTG
AGCTTGCGATTCTTGTGCTTGGCTCGTCGCCTTTCGGCTTGGAGGTTGAT
CTCATTCTGGGAATCCTCAGCGGCAGATTCCTCGGTGACTGCCTGCTCCT
CCTGTTGCTGATCAGCCTCCTGGTGTGCCTCCGACTCCGGATTTTCCTCG
CCGTTGTCGTTCTCCACGAAAATGCACTCGGGATTGACGGCAGCACACTC
GCCAAAGCTGGTGGCCCTGGCCATAGGATTTCTGGCATTGGTGTACTTCT
CAAAGAAACCGCGACCCACAATGCGGAAAGCCATGCTGGTCAAGGGATTC
AACTTGGATCTAAACTCCATTTCGCAGACAAATCGGCGTCGGCACGCCTT
TGAGTCCAGGCCCAAAAAGGCGAACATAAAATCGGCAATCTGCTCTTCGG
CGGGCATTTGGCGAGCCACGCTCTCTGAAATTTCCTCATCCACAATCTCC
ACATGCTCTTCCTCCTGCTCATCTTGGATCAAATGGGCGTTATCTGCAGC
GCTACGGCGTCCGCGACGGCGCGTGTCTACGGGACCAGATGGGCCACTTG
GTCCAGAGGGAGATTCGCTATGGTAGTCGCCATGCACATCAGAGACAATG
TCCGATCCAGCATAGCTGCTGTATCCGGAATAGGGCTCGAAACTGGCGCC
GGGAGTCAAAGATGAAGGAGCATCATAGTGCTCCAAGTGATCGT
BS12945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-PA | 1119 | CG12920-RA | 434..1119 | 702..17 | 3430 | 100 | Minus |
CG12920-PA | 1119 | CG12920-RA | 392..428 | 744..708 | 160 | 97.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1307 | CG12920-RA | 476..1205 | 744..15 | 3590 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10070540..10070965 | 440..15 | 2130 | 100 | Minus |
2R | 25286936 | 2R | 10070176..10070480 | 744..440 | 1435 | 98 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:03:22 has no hits.
BS12945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:13 Download gff for
BS12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-PA | 392..1119 | 17..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:28 Download gff for
BS12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 476..1217 | 7..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:54 Download gff for
BS12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 476..1217 | 7..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:54 Download gff for
BS12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10070176..10070479 | 441..744 | 99 | -> | Minus |
2R | 10070540..10070977 | 7..440 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:28 Download gff for
BS12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5957681..5957984 | 441..744 | 99 | -> | Minus |
arm_2R | 5958045..5958482 | 7..440 | 99 | | Minus |
BS12945.5prime Sequence
708 bp (685 high quality bases) assembled on 2006-10-13
> BS12945.5prime
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCCGCCAATGCCC
GCCGAAGA
BS12945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-PA | 1119 | CG12920-RA | 1..673 | 17..689 | 3365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1307 | CG12920-RA | 84..776 | 16..708 | 3420 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10070129..10070476 | 361..708 | 1695 | 99.1 | Plus |
2R | 25286936 | 2R | 10069189..10069385 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 10069920..10070067 | 213..360 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:20:43 has no hits.
BS12945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:13 Download gff for
BS12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-PA | 1..691 | 17..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:47:50 Download gff for
BS12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 80..775 | 9..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:13 Download gff for
BS12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 80..775 | 9..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:13 Download gff for
BS12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10069186..10069385 | 14..212 | 99 | -> | Plus |
2R | 10069920..10070067 | 213..360 | 100 | -> | Plus |
2R | 10070129..10070475 | 361..707 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:47:50 Download gff for
BS12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5956691..5956890 | 14..212 | 99 | -> | Plus |
arm_2R | 5957425..5957572 | 213..360 | 100 | -> | Plus |
arm_2R | 5957634..5957980 | 361..707 | 99 | | Plus |
BS12945.complete Sequence
1151 bp assembled on 2006-11-01
GenBank Submission: FJ637339
> BS12945.complete
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCGCCAAATGCCC
GCCGAAGAGCAGATTGCCGATTTTATGTTCGCCTTTTTGGGCCTGGACTC
AAAGGCGTGCCGACGCCGATTTGTCTGCGAAATGGAGTTTAGATCCAAGT
TGAATCCCTTGACCAGCATGGCTTTCCGCATTGTGGGTCGCGGTTTCTTT
GAGAAGTACACCAATGCCAGAAATCCTATGGCCAGGGCCACCAGCTTTGG
CGAGTGTGCTGCCGTCAATCCCGAGTGCATTTTCGTGGAGAACGACAACG
GCGAGGAAAATCCGGAGTCGGAGGCACACCAGGAGGCTGATCAGCAACAG
GAGGAGCAGGCAGTCACCGAGGAATCTGCCGCTGAGGATTCCCAGAATGA
GATCAACCTCCAAGCCGAAAGGCGACGAGCCAAGCACAAGAATCGCAAGC
TCAGCTCCATTGCCGAGCACATCCTGATGCAGTAGAAGCTTTCTAGACCA
T
BS12945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1119 | CG12920-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1307 | CG12920-RA | 84..1205 | 16..1137 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10070540..10070965 | 712..1137 | 2130 | 100 | Plus |
2R | 25286936 | 2R | 10070129..10070480 | 361..712 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 10069189..10069385 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 10069920..10070067 | 213..360 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:19:20 has no hits.
BS12945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:17 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:10 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 82..1200 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:37 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 85..1203 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:18 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 77..1214 | 9..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:25 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 85..1203 | 17..1135 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:25 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10069190..10069385 | 17..212 | 100 | -> | Plus |
2R | 10069920..10070067 | 213..360 | 100 | -> | Plus |
2R | 10070129..10070479 | 361..711 | 100 | -> | Plus |
2R | 10070540..10070963 | 712..1135 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:37 Download gff for
BS12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5956695..5956890 | 17..212 | 100 | -> | Plus |
arm_2R | 5957425..5957572 | 213..360 | 100 | -> | Plus |
arm_2R | 5957634..5957984 | 361..711 | 100 | -> | Plus |
arm_2R | 5958045..5958468 | 712..1135 | 100 | | Plus |
BS12945.pep Sequence
Translation from 16 to 1134
> BS12945.pep
MHKNTIWYGAVLLVVYFTLVFCEETKNEEAPAQLDNQVEDTWENLGRELM
EFEGRTRRHRHHMFWYRHLWPIAIAYWIKVKVVIVSFFVGSAIYLGLRYF
WPHARCNQEIILDHPPSSFSHHDHIPYSLDHDHSEHYDAPSSFDSGASFE
PYSGYSSYAGSDIVSDVHGDYHSESPSGPSGPSGPVDTRRRGRRSAADNA
HLIQDEQEEEHVEIVDEEISESVARQMPAEEQIADFMFAFLGLDSKACRR
RFVCEMEFRSKLNPLTSMAFRIVGRGFFEKYTNARNPMARATSFGECAAV
NPECIFVENDNGEENPESEAHQEADQQQEEQAVTEESAAEDSQNEINLQA
ERRRAKHKNRKLSSIAEHILMQ*
BS12945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-PA | 372 | CG12920-PA | 1..372 | 1..372 | 1990 | 100 | Plus |