Clone Sequence Records
BS12946.3prime Sequence
810 bp (704 high quality bases) assembled on 2006-10-13
> BS12946.3prime
ATGGTCTAGAAAGCTTTCAGATTGCACTTTGCTCGATGTTGTTGGCGCTG
GTTGTTGCTTCTTGTACGCGTTGTTGTTCTAGTTGTTGTTGCAGTAGCAG
TAGTTGTTGTTGTTGTTGTTGTTGTTTGTACGTGCGACCGAGTAAAGGAA
CATGCTCGTCCTGTAGCTGCCGGTTGATCAGGGCCGTCAGTCCGTGTCCC
ACATCCACACTCTTCTTTAGTATCAACATGGGCTTGTCCTCCGCATCCTC
AGCATATCCACCAGAGGGCAGGAAGCCATTGCTGGCTATCGACTCGCTCA
CCTGGGTGACCTGCATCAGCTTCTTGACCACATCCCGGCCCAGAATGTGA
TCGAAGACGGTCTGCAAGAAGGGCTCGGCCATAATTGACAATTTGAGCTT
GTCGCGATGCCAGATCAGCACCCGCGACTCCTCCATGGCCATGATGGAGA
CCTGAAAGTAGTCATCGGTCGAGACGCCAAACCATTCTGGCGAGTCTAGG
AACTGATGGGGAAACACAATGTGCAGGGCGCGCTGATGCTGCGACACCAC
CAGTTTGCCGCTCAGCACCAGCGACAGGCTGTCGACCTTGGTGACCTTCT
CCTGGGCGTAGACCTCCTGGTACTTCAGGGCACGTATCACCTTCATGCAG
TTGAGCACCTTCTTGAACTGGTGGCGCGTCACGTGCAGCGGCTGGAAAAG
TGCCAGGTAGACCGCTTCGATTTCCTGCTCGAATCGCACAGGCCTCAGCC
GGCATAGCACCACGACGAGATAGATGAAGTTGACAAAAAGTCCCATGGCC
CAACACAGGA
BS12946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32513-PA | 1245 | bves-RA | 465..1245 | 797..17 | 3905 | 100 | Minus |
CG32513-PB | 1245 | bves-RB | 465..1245 | 797..17 | 3905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bves-RB | 3789 | CG32513-RB | 1166..1960 | 810..16 | 3930 | 99.6 | Minus |
bves-RA | 3952 | CG32513-RA | 1329..2123 | 810..16 | 3930 | 99.6 | Minus |
bves-RD | 3428 | CG32513-RD | 1166..1816 | 810..160 | 3210 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21075364..21075522 | 713..555 | 795 | 100 | Minus |
X | 23542271 | X | 21075770..21075924 | 454..300 | 775 | 100 | Minus |
X | 23542271 | X | 21076964..21077108 | 160..16 | 725 | 100 | Minus |
X | 23542271 | X | 21076039..21076182 | 303..160 | 720 | 100 | Minus |
X | 23542271 | X | 21075592..21075696 | 554..450 | 525 | 100 | Minus |
X | 23542271 | X | 21061460..21061559 | 810..711 | 455 | 97 | Minus |
Blast to na_te.dros performed 2015-02-12 17:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2482..2538 | 126..70 | 123 | 68.4 | Minus |
BS12946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:14 Download gff for
BS12946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32513-PB | 453..1245 | 17..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:32 Download gff for
BS12946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RA | 1330..2126 | 10..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:44 Download gff for
BS12946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RA | 1330..2126 | 10..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:44 Download gff for
BS12946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21061461..21061557 | 713..809 | 96 | -> | Minus |
X | 21075365..21075522 | 555..712 | 100 | -> | Minus |
X | 21075592..21075694 | 452..554 | 100 | -> | Minus |
X | 21075773..21075922 | 302..451 | 100 | -> | Minus |
X | 21076041..21076182 | 160..301 | 100 | -> | Minus |
X | 21076965..21077111 | 10..159 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:32 Download gff for
BS12946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20932488..20932584 | 713..809 | 96 | -> | Minus |
arm_X | 20946392..20946549 | 555..712 | 100 | -> | Minus |
arm_X | 20946619..20946721 | 452..554 | 100 | -> | Minus |
arm_X | 20946800..20946949 | 302..451 | 100 | -> | Minus |
arm_X | 20947068..20947209 | 160..301 | 100 | -> | Minus |
arm_X | 20947992..20948138 | 10..159 | 98 | | Minus |
BS12946.5prime Sequence
760 bp (759 high quality bases) assembled on 2006-10-13
> BS12946.5prime
GAAGTTATCAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTG
GTATGGGCGCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATG
GGCATTGGCATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAG
TTCGGGATCTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGA
GCACGGCGGGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAAC
AATGGAACCCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTG
CCTCGGGCCACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCC
TAGCCTTTTTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCC
ATGCTGCTCATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGC
CTTTGCACCGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACT
TCATCTATCTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAG
CAGGAAATCGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGAC
GCGCCACCAGTTCAAGAAGGTGCTCAACTGCATGAAGGTGATACGTGCCC
TGAAGTACCAGGAGGTCTACGCCCAGGAGAAGGTCACCAAGGTCGACAGC
CTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGC
CCTGCACATT
BS12946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32513-PA | 1245 | bves-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
CG32513-PB | 1245 | bves-RB | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bves-RD | 3428 | CG32513-RD | 715..1458 | 17..760 | 3720 | 100 | Plus |
bves-RC | 3461 | CG32513-RC | 715..1458 | 17..760 | 3720 | 100 | Plus |
bves-RB | 3789 | CG32513-RB | 715..1458 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21061009..21061559 | 17..567 | 2755 | 100 | Plus |
X | 23542271 | X | 21075364..21075522 | 565..723 | 795 | 100 | Plus |
X | 23542271 | X | 21075592..21075628 | 724..760 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:03:34 has no hits.
BS12946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:14 Download gff for
BS12946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32513-PB | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:29 Download gff for
BS12946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RB | 706..1458 | 7..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:56 Download gff for
BS12946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RB | 706..1458 | 7..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:56 Download gff for
BS12946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21061006..21061557 | 11..565 | 99 | -> | Plus |
X | 21075365..21075522 | 566..723 | 100 | -> | Plus |
X | 21075592..21075628 | 724..760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:29 Download gff for
BS12946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20946392..20946549 | 566..723 | 100 | -> | Plus |
arm_X | 20946619..20946655 | 724..760 | 100 | | Plus |
arm_X | 20932033..20932584 | 11..565 | 99 | -> | Plus |
BS12946.complete Sequence
1277 bp assembled on 2006-11-01
GenBank Submission: FJ637340
> BS12946.complete
GAAGTTATCAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTG
GTATGGGCGCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATG
GGCATTGGCATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAG
TTCGGGATCTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGA
GCACGGCGGGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAAC
AATGGAACCCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTG
CCTCGGGCCACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCC
TAGCCTTTTTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCC
ATGCTGCTCATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGC
CTTTGCACCGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACT
TCATCTATCTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAG
CAGGAAATCGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGAC
GCGCCACCAGTTCAAGAAGGTGCTCAACTGCATGAAGGTGATACGTGCCC
TGAAGTACCAGGAGGTCTACGCCCAGGAGAAGGTCACCAAGGTCGACAGC
CTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGC
CCTGCACATTGTGTTTCCCCATCAGTTCCTAGACTCGCCAGAATGGTTTG
GCGTCTCGACCGATGACTACTTTCAGGTCTCCATCATGGCCATGGAGGAG
TCGCGGGTGCTGATCTGGCATCGCGACAAGCTCAAATTGTCAATTATGGC
CGAGCCCTTCTTGCAGACCGTCTTCGATCACATTCTGGGCCGGGATGTGG
TCAAGAAGCTGATGCAGGTCACCCAGGTGAGCGAGTCGATAGCCAGCAAT
GGCTTCCTGCCCTCTGGTGGATATGCTGAGGATGCGGAGGACAAGCCCAT
GTTGATACTAAAGAAGAGTGTGGATGTGGGACACGGACTGACGGCCCTGA
TCAACCGGCAGCTACAGGACGAGCATGTTCCTTTACTCGGTCGCACGTAC
AAACAACAACAACAACAACAACAACTACTGCTACTGCAACAACAACTAGA
ACAACAACGCGTACAAGAAGCAACAACCAGCGCCAACAACATCGAGCAAA
GTGCAATCTGAAAGCTTTCTAGACCAT
BS12946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bves-RB | 1245 | CG32513-PB | 1..1245 | 17..1261 | 6225 | 100 | Plus |
bves-RA | 1245 | CG32513-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
bves-RD | 1167 | CG32513-PD | 1..1102 | 17..1118 | 5510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bves-RB | 3789 | CG32513-RB | 715..1960 | 17..1262 | 6230 | 100 | Plus |
bves-RA | 3952 | CG32513-RA | 878..2123 | 17..1262 | 6230 | 100 | Plus |
bves-RD | 3428 | CG32513-RD | 715..1816 | 17..1118 | 5510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21061009..21061559 | 17..567 | 2755 | 100 | Plus |
X | 23542271 | X | 21075364..21075522 | 565..723 | 795 | 100 | Plus |
X | 23542271 | X | 21075770..21075924 | 824..978 | 775 | 100 | Plus |
X | 23542271 | X | 21076964..21077108 | 1118..1262 | 725 | 100 | Plus |
X | 23542271 | X | 21076039..21076182 | 975..1118 | 720 | 100 | Plus |
X | 23542271 | X | 21075592..21075696 | 724..828 | 525 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2482..2538 | 1152..1208 | 123 | 68.4 | Plus |
BS12946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:19 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RB | 1..1245 | 17..1261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:12 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RB | 710..1953 | 17..1260 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:38 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RA | 878..2121 | 17..1260 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:19 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RB | 701..1958 | 7..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:27 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bves-RA | 878..2121 | 17..1260 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:27 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21061009..21061557 | 17..565 | 100 | -> | Plus |
X | 21075365..21075522 | 566..723 | 100 | -> | Plus |
X | 21075592..21075694 | 724..826 | 100 | -> | Plus |
X | 21075773..21075922 | 827..976 | 100 | -> | Plus |
X | 21076041..21076182 | 977..1118 | 100 | -> | Plus |
X | 21076965..21077106 | 1119..1260 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:38 Download gff for
BS12946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20947992..20948133 | 1119..1260 | 100 | | Plus |
arm_X | 20932036..20932584 | 17..565 | 100 | -> | Plus |
arm_X | 20946392..20946549 | 566..723 | 100 | -> | Plus |
arm_X | 20946619..20946721 | 724..826 | 100 | -> | Plus |
arm_X | 20946800..20946949 | 827..976 | 100 | -> | Plus |
arm_X | 20947068..20947209 | 977..1118 | 100 | -> | Plus |
BS12946.pep Sequence
Translation from 16 to 1260
> BS12946.pep
MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA
DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH
LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV
ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK
KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF
PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ
TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK
SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ
EATTSANNIEQSAI*
BS12946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bves-PB | 414 | CG32513-PB | 1..414 | 1..414 | 2119 | 100 | Plus |
bves-PA | 414 | CG32513-PA | 1..414 | 1..414 | 2119 | 100 | Plus |
bves-PD | 388 | CG32513-PD | 1..367 | 1..367 | 1889 | 100 | Plus |
bves-PC | 399 | CG32513-PC | 1..367 | 1..367 | 1889 | 100 | Plus |