Clone BS12946 Report

Search the DGRC for BS12946

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:46
Vector:pDNR-Dual
Associated Gene/Transcriptbves-RA
Protein status:BS12946.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12946.3prime Sequence

810 bp (704 high quality bases) assembled on 2006-10-13

> BS12946.3prime
ATGGTCTAGAAAGCTTTCAGATTGCACTTTGCTCGATGTTGTTGGCGCTG
GTTGTTGCTTCTTGTACGCGTTGTTGTTCTAGTTGTTGTTGCAGTAGCAG
TAGTTGTTGTTGTTGTTGTTGTTGTTTGTACGTGCGACCGAGTAAAGGAA
CATGCTCGTCCTGTAGCTGCCGGTTGATCAGGGCCGTCAGTCCGTGTCCC
ACATCCACACTCTTCTTTAGTATCAACATGGGCTTGTCCTCCGCATCCTC
AGCATATCCACCAGAGGGCAGGAAGCCATTGCTGGCTATCGACTCGCTCA
CCTGGGTGACCTGCATCAGCTTCTTGACCACATCCCGGCCCAGAATGTGA
TCGAAGACGGTCTGCAAGAAGGGCTCGGCCATAATTGACAATTTGAGCTT
GTCGCGATGCCAGATCAGCACCCGCGACTCCTCCATGGCCATGATGGAGA
CCTGAAAGTAGTCATCGGTCGAGACGCCAAACCATTCTGGCGAGTCTAGG
AACTGATGGGGAAACACAATGTGCAGGGCGCGCTGATGCTGCGACACCAC
CAGTTTGCCGCTCAGCACCAGCGACAGGCTGTCGACCTTGGTGACCTTCT
CCTGGGCGTAGACCTCCTGGTACTTCAGGGCACGTATCACCTTCATGCAG
TTGAGCACCTTCTTGAACTGGTGGCGCGTCACGTGCAGCGGCTGGAAAAG
TGCCAGGTAGACCGCTTCGATTTCCTGCTCGAATCGCACAGGCCTCAGCC
GGCATAGCACCACGACGAGATAGATGAAGTTGACAAAAAGTCCCATGGCC
CAACACAGGA

BS12946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32513-PA 1245 bves-RA 465..1245 797..17 3905 100 Minus
CG32513-PB 1245 bves-RB 465..1245 797..17 3905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RB 3789 CG32513-RB 1166..1960 810..16 3930 99.6 Minus
bves-RA 3952 CG32513-RA 1329..2123 810..16 3930 99.6 Minus
bves-RD 3428 CG32513-RD 1166..1816 810..160 3210 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21075364..21075522 713..555 795 100 Minus
X 23542271 X 21075770..21075924 454..300 775 100 Minus
X 23542271 X 21076964..21077108 160..16 725 100 Minus
X 23542271 X 21076039..21076182 303..160 720 100 Minus
X 23542271 X 21075592..21075696 554..450 525 100 Minus
X 23542271 X 21061460..21061559 810..711 455 97 Minus
Blast to na_te.dros performed 2015-02-12 17:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2538 126..70 123 68.4 Minus

BS12946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:14 Download gff for BS12946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32513-PB 453..1245 17..809 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:44:32 Download gff for BS12946.3prime
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1330..2126 10..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:44 Download gff for BS12946.3prime
Subject Subject Range Query Range Percent Splice Strand
bves-RA 1330..2126 10..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:44 Download gff for BS12946.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21061461..21061557 713..809 96 -> Minus
X 21075365..21075522 555..712 100 -> Minus
X 21075592..21075694 452..554 100 -> Minus
X 21075773..21075922 302..451 100 -> Minus
X 21076041..21076182 160..301 100 -> Minus
X 21076965..21077111 10..159 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:44:32 Download gff for BS12946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20932488..20932584 713..809 96 -> Minus
arm_X 20946392..20946549 555..712 100 -> Minus
arm_X 20946619..20946721 452..554 100 -> Minus
arm_X 20946800..20946949 302..451 100 -> Minus
arm_X 20947068..20947209 160..301 100 -> Minus
arm_X 20947992..20948138 10..159 98   Minus

BS12946.5prime Sequence

760 bp (759 high quality bases) assembled on 2006-10-13

> BS12946.5prime
GAAGTTATCAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTG
GTATGGGCGCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATG
GGCATTGGCATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAG
TTCGGGATCTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGA
GCACGGCGGGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAAC
AATGGAACCCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTG
CCTCGGGCCACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCC
TAGCCTTTTTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCC
ATGCTGCTCATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGC
CTTTGCACCGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACT
TCATCTATCTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAG
CAGGAAATCGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGAC
GCGCCACCAGTTCAAGAAGGTGCTCAACTGCATGAAGGTGATACGTGCCC
TGAAGTACCAGGAGGTCTACGCCCAGGAGAAGGTCACCAAGGTCGACAGC
CTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGC
CCTGCACATT

BS12946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32513-PA 1245 bves-RA 1..744 17..760 3720 100 Plus
CG32513-PB 1245 bves-RB 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RD 3428 CG32513-RD 715..1458 17..760 3720 100 Plus
bves-RC 3461 CG32513-RC 715..1458 17..760 3720 100 Plus
bves-RB 3789 CG32513-RB 715..1458 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21061009..21061559 17..567 2755 100 Plus
X 23542271 X 21075364..21075522 565..723 795 100 Plus
X 23542271 X 21075592..21075628 724..760 185 100 Plus
Blast to na_te.dros performed on 2015-01-30 18:03:34 has no hits.

BS12946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:14 Download gff for BS12946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32513-PB 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:29 Download gff for BS12946.5prime
Subject Subject Range Query Range Percent Splice Strand
bves-RB 706..1458 7..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:07:56 Download gff for BS12946.5prime
Subject Subject Range Query Range Percent Splice Strand
bves-RB 706..1458 7..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:07:56 Download gff for BS12946.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21061006..21061557 11..565 99 -> Plus
X 21075365..21075522 566..723 100 -> Plus
X 21075592..21075628 724..760 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:29 Download gff for BS12946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20946392..20946549 566..723 100 -> Plus
arm_X 20946619..20946655 724..760 100   Plus
arm_X 20932033..20932584 11..565 99 -> Plus

BS12946.complete Sequence

1277 bp assembled on 2006-11-01

GenBank Submission: FJ637340

> BS12946.complete
GAAGTTATCAGTCGACATGCCCAGCACGGCGGGCAGTGCAGCTGGCGTTG
GTATGGGCGCCCTGATCAACAGTGCCGGCAGCAGCGCCAGTAGTGTCATG
GGCATTGGCATGGGCAGAGCAGCTGCTACGGGAGCAGGAGCACCAGGCAG
TTCGGGATCTGGAGCAGATGCCTCCGCCGCCGGCACTTTAATCGCCCAGA
GCACGGCGGGAACGAGCGCCGCCAGCAGTGGAACGATCACCTGGGACAAC
AATGGAACCCTGCGATCGATCAATCCCGGCGATTGGTCCATCGAACAGTG
CCTCGGGCCACATCACCTGTACTTTCAGCTCGGCTGGGCCTTTCTCTTCC
TAGCCTTTTTGGCTCCACACGGTCCCTACGGCGCCCTGTGGATGCGTGCC
ATGCTGCTCATTGGCTGCCTGATGATGGGCATGCATGGCTACTTGGTGGC
CTTTGCACCGGACGTCATCCTGTGGTCGGGCATGGGACTTTTTGTCAACT
TCATCTATCTCGTCGTGGTGCTATGCCGGCTGAGGCCTGTGCGATTCGAG
CAGGAAATCGAAGCGGTCTACCTGGCACTTTTCCAGCCGCTGCACGTGAC
GCGCCACCAGTTCAAGAAGGTGCTCAACTGCATGAAGGTGATACGTGCCC
TGAAGTACCAGGAGGTCTACGCCCAGGAGAAGGTCACCAAGGTCGACAGC
CTGTCGCTGGTGCTGAGCGGCAAACTGGTGGTGTCGCAGCATCAGCGCGC
CCTGCACATTGTGTTTCCCCATCAGTTCCTAGACTCGCCAGAATGGTTTG
GCGTCTCGACCGATGACTACTTTCAGGTCTCCATCATGGCCATGGAGGAG
TCGCGGGTGCTGATCTGGCATCGCGACAAGCTCAAATTGTCAATTATGGC
CGAGCCCTTCTTGCAGACCGTCTTCGATCACATTCTGGGCCGGGATGTGG
TCAAGAAGCTGATGCAGGTCACCCAGGTGAGCGAGTCGATAGCCAGCAAT
GGCTTCCTGCCCTCTGGTGGATATGCTGAGGATGCGGAGGACAAGCCCAT
GTTGATACTAAAGAAGAGTGTGGATGTGGGACACGGACTGACGGCCCTGA
TCAACCGGCAGCTACAGGACGAGCATGTTCCTTTACTCGGTCGCACGTAC
AAACAACAACAACAACAACAACAACTACTGCTACTGCAACAACAACTAGA
ACAACAACGCGTACAAGAAGCAACAACCAGCGCCAACAACATCGAGCAAA
GTGCAATCTGAAAGCTTTCTAGACCAT

BS12946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RB 1245 CG32513-PB 1..1245 17..1261 6225 100 Plus
bves-RA 1245 CG32513-PA 1..1245 17..1261 6225 100 Plus
bves-RD 1167 CG32513-PD 1..1102 17..1118 5510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
bves-RB 3789 CG32513-RB 715..1960 17..1262 6230 100 Plus
bves-RA 3952 CG32513-RA 878..2123 17..1262 6230 100 Plus
bves-RD 3428 CG32513-RD 715..1816 17..1118 5510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21061009..21061559 17..567 2755 100 Plus
X 23542271 X 21075364..21075522 565..723 795 100 Plus
X 23542271 X 21075770..21075924 824..978 775 100 Plus
X 23542271 X 21076964..21077108 1118..1262 725 100 Plus
X 23542271 X 21076039..21076182 975..1118 720 100 Plus
X 23542271 X 21075592..21075696 724..828 525 100 Plus
Blast to na_te.dros performed 2014-11-28 08:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2482..2538 1152..1208 123 68.4 Plus

BS12946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:19 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 1..1245 17..1261 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:12 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 710..1953 17..1260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:38 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 878..2121 17..1260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:19 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RB 701..1958 7..1268 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:27 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
bves-RA 878..2121 17..1260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:27 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
X 21061009..21061557 17..565 100 -> Plus
X 21075365..21075522 566..723 100 -> Plus
X 21075592..21075694 724..826 100 -> Plus
X 21075773..21075922 827..976 100 -> Plus
X 21076041..21076182 977..1118 100 -> Plus
X 21076965..21077106 1119..1260 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:38 Download gff for BS12946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20947992..20948133 1119..1260 100   Plus
arm_X 20932036..20932584 17..565 100 -> Plus
arm_X 20946392..20946549 566..723 100 -> Plus
arm_X 20946619..20946721 724..826 100 -> Plus
arm_X 20946800..20946949 827..976 100 -> Plus
arm_X 20947068..20947209 977..1118 100 -> Plus

BS12946.pep Sequence

Translation from 16 to 1260

> BS12946.pep
MPSTAGSAAGVGMGALINSAGSSASSVMGIGMGRAAATGAGAPGSSGSGA
DASAAGTLIAQSTAGTSAASSGTITWDNNGTLRSINPGDWSIEQCLGPHH
LYFQLGWAFLFLAFLAPHGPYGALWMRAMLLIGCLMMGMHGYLVAFAPDV
ILWSGMGLFVNFIYLVVVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFK
KVLNCMKVIRALKYQEVYAQEKVTKVDSLSLVLSGKLVVSQHQRALHIVF
PHQFLDSPEWFGVSTDDYFQVSIMAMEESRVLIWHRDKLKLSIMAEPFLQ
TVFDHILGRDVVKKLMQVTQVSESIASNGFLPSGGYAEDAEDKPMLILKK
SVDVGHGLTALINRQLQDEHVPLLGRTYKQQQQQQQLLLLQQQLEQQRVQ
EATTSANNIEQSAI*

BS12946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
bves-PB 414 CG32513-PB 1..414 1..414 2119 100 Plus
bves-PA 414 CG32513-PA 1..414 1..414 2119 100 Plus
bves-PD 388 CG32513-PD 1..367 1..367 1889 100 Plus
bves-PC 399 CG32513-PC 1..367 1..367 1889 100 Plus