Clone Sequence Records
BS12953.3prime Sequence
660 bp (651 high quality bases) assembled on 2006-10-13
> BS12953.3prime
ATGGTCTAGAAAGCTTTTAGAGCCCTGCCAAAACGGCATCGATCCAAGGC
CTCAGGTACGCCACATTGGCATAGACGCCGGGATAATTGGGCAGTGCACA
ACTGTTGCCCCAGGACACGACTCCATAGAGTTCATCGCGCACCGCCAACG
GTCCTCCGGAATCTCCCTGGCAGGCATCCGCACCACCGACACCCCGTTTG
CCGGCACACAACATGGCCGATGTAATGCGGTAGGTCTCGTCGCCAAAATC
CTCGTAGTCCTGATCACAAAGCTCGTTGCTCACAATCGGGACATCGACCG
CGAGCAGTTGGTTCGAGGAGTAGCCGCCGGGAGAAGTGGTTCCCCATCCG
CTGACCTTGCTGACCGTTCCCTCAATTGGTTGTTCCAAGGCCAGCTTAAT
GGCCTTGATGGTGAAGTTGTTGAGCGGCAATGGGGGATCCACAAATAGAA
TGGCAATATCGTTGTTGTAGGCAGCTCCCGAGTAATACCCTTCGTGCATA
ACGATCTCCTTGACATTGGTGATAACGCCATCGGAGCCGGTTTGGAAATT
TGTCCCGGCCACCACTTTATATTGACTTGCCACCGTGCCGATGACGCAGT
GCGCCGCTGTCACTATTGTAGTCTCATTGAAAATGGATCCTCCCGCACGA
TGGCGAAAGG
BS12953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12387-PA | 843 | zetaTry-RA | 217..843 | 643..17 | 3135 | 100 | Minus |
| CG12386-PA | 789 | etaTry-RA | 624..653 | 179..150 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 947 | CG12387-RA | 233..877 | 660..16 | 3180 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11339256..11339900 | 16..660 | 3180 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:40:06 has no hits.
BS12953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:23 Download gff for
BS12953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12387-PA | 200..843 | 17..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:23 Download gff for
BS12953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 233..879 | 11..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:55 Download gff for
BS12953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 233..879 | 11..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:55 Download gff for
BS12953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11339254..11339900 | 11..660 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:23 Download gff for
BS12953.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7226759..7227405 | 11..660 | 99 | | Plus |
BS12953.5prime Sequence
727 bp (638 high quality bases) assembled on 2006-10-13
> BS12953.5prime
GAAGTTATCAGTCGACATGTCGAGCTCTTGGATAGTTGGCCTCTTGGCCT
TTCTCGTCAGCTTGGTGGCCTTGACCCAAGGTCTTCCCCTTCTGGAGGAT
CTGGATGAGAAGAGCGTTCCGGATGGCCGCATTGTGGGTGGCTATGCGAC
GGACATAGCGCAGGTCCCGTACCAGATTTCCCTGCGCTACAAGGGTATCA
CCACGCCGGAGAATCCCTTTCGCCATCGTTGCGGAGGATCCATTTTCAAT
GAGACTACAATAGTGACAGCGGCGCACTGCGTCATCGGCACGGTGGCAAG
TCAATATAAAGTGGTGGCCGGGACAAATTTCCAAACCGGCTCCGATGGCG
TTATCACCAATGTCAAGGAGATCGTTATGCACGAAGGGTATTACTCGGGA
GCTGCCTACAACAACGATATTGCCATTCTATTTGTGGATCCCCCATTGCC
GCTCAACAACTTCACCATCAAGGCCATTAAGCTGGCCTTGGAACAACCAA
TTGAGGGAACGGTCAGCAAGGTCAGCGGATGGGGAACCACTTCTCCCGGC
GGCTACTCCTCGAACCAACTGCTCGCGGTCGATGTCCCGATTGTGAGCAA
CGAGCTTTGTGATCAGGACTACGAGGATTTTGGCGACGAGACCTACCGCA
TTACATCGGCCATGTTGTGTGCCGGCAAACGGGGTGTCGGTGGTGCGGAT
GCCTGCCANGGAGATTCCGGAGGACCG
BS12953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12387-PA | 843 | zetaTry-RA | 1..711 | 17..727 | 3536 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 947 | CG12387-RA | 33..744 | 16..727 | 3549 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11339389..11340100 | 727..16 | 3549 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:43:24 has no hits.
BS12953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:24 Download gff for
BS12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12387-PA | 1..711 | 17..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:24:45 Download gff for
BS12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 33..744 | 16..727 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:22:56 Download gff for
BS12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 33..744 | 16..727 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:22:56 Download gff for
BS12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11339389..11340100 | 16..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:24:45 Download gff for
BS12953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7226894..7227605 | 16..727 | 99 | | Minus |
BS12953.complete Sequence
875 bp assembled on 2006-11-01
GenBank Submission: FJ637341
> BS12953.complete
GAAGTTATCAGTCGACATGTCGAGCTCTTGGATAGTTGGCCTCTTGGCCT
TTCTCGTCAGCTTGGTGGCCTTGACCCAAGGTCTTCCCCTTCTGGAGGAT
CTGGATGAGAAGAGCGTTCCGGATGGCCGCATTGTGGGTGGCTATGCGAC
GGACATAGCGCAGGTCCCGTACCAGATTTCCCTGCGCTACAAGGGTATCA
CCACGCCGGAGAATCCCTTTCGCCATCGTTGCGGAGGATCCATTTTCAAT
GAGACTACAATAGTGACAGCGGCGCACTGCGTCATCGGCACGGTGGCAAG
TCAATATAAAGTGGTGGCCGGGACAAATTTCCAAACCGGCTCCGATGGCG
TTATCACCAATGTCAAGGAGATCGTTATGCACGAAGGGTATTACTCGGGA
GCTGCCTACAACAACGATATTGCCATTCTATTTGTGGATCCCCCATTGCC
GCTCAACAACTTCACCATCAAGGCCATTAAGCTGGCCTTGGAACAACCAA
TTGAGGGAACGGTCAGCAAGGTCAGCGGATGGGGAACCACTTCTCCCGGC
GGCTACTCCTCGAACCAACTGCTCGCGGTCGATGTCCCGATTGTGAGCAA
CGAGCTTTGTGATCAGGACTACGAGGATTTTGGCGACGAGACCTACCGCA
TTACATCGGCCATGTTGTGTGCCGGCAAACGGGGTGTCGGTGGTGCGGAT
GCCTGCCAGGGAGATTCCGGAGGACCGTTGGCGGTGCGCGATGAACTCTA
TGGAGTCGTGTCCTGGGGCAACAGTTGTGCACTGCCCAATTATCCCGGCG
TCTATGCCAATGTGGCGTACCTGAGGCCTTGGATCGATGCCGTTTTGGCA
GGGCTCTAAAAGCTTTCTAGACCAT
BS12953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 843 | CG12387-PA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-RA | 947 | CG12387-RA | 33..877 | 16..860 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11339256..11340100 | 860..16 | 4225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:10:38 has no hits.
BS12953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:20 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:28 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 29..875 | 16..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:37 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 34..874 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:20 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 29..875 | 16..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:30 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zetaTry-RA | 34..874 | 17..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:30 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11339259..11340099 | 17..857 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:37 Download gff for
BS12953.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7226764..7227604 | 17..857 | 100 | | Minus |
BS12953.pep Sequence
Translation from 16 to 858
> BS12953.pep
MSSSWIVGLLAFLVSLVALTQGLPLLEDLDEKSVPDGRIVGGYATDIAQV
PYQISLRYKGITTPENPFRHRCGGSIFNETTIVTAAHCVIGTVASQYKVV
AGTNFQTGSDGVITNVKEIVMHEGYYSGAAYNNDIAILFVDPPLPLNNFT
IKAIKLALEQPIEGTVSKVSGWGTTSPGGYSSNQLLAVDVPIVSNELCDQ
DYEDFGDETYRITSAMLCAGKRGVGGADACQGDSGGPLAVRDELYGVVSW
GNSCALPNYPGVYANVAYLRPWIDAVLAGL*
BS12953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zetaTry-PA | 280 | CG12387-PA | 1..280 | 1..280 | 1468 | 100 | Plus |
| etaTry-PA | 262 | CG12386-PA | 25..254 | 36..273 | 549 | 48.3 | Plus |
| betaTry-PB | 253 | CG18211-PB | 1..249 | 9..273 | 471 | 44.4 | Plus |
| betaTry-PA | 253 | CG18211-PA | 1..249 | 9..273 | 471 | 44.4 | Plus |
| gammaTry-PA | 253 | CG30028-PA | 7..249 | 13..273 | 463 | 45.4 | Plus |
