Clone Sequence Records
BS12955.complete Sequence
1210 bp assembled on 2009-12-07
GenBank Submission: KX802602
> BS12955.complete
GAAGTTATCAGTCGACATGAGCGGCGTGGAGGAGCAGGCGAGTCTGCTGC
GCGTACTGATCAACTGTGCGGAGAAGGCGGCCAACATAGCCAGGATATGT
CGCTCCAACGAGCAGCTCCTGGCATTGCTGGTGCAGGAGAAGATCGGATC
CGAGGCCAATGAGCGCTTCGAGCACGACTTCAAGACCCTGGCCGATGTGC
TCATCCAGGAGACGATCAAGCACGAGGTGGGTGCGCTCTTTCCTGCCATG
AAGGATGCCATCCTGGGCGAGGAATCGCCCAATTTCACCAACCAACTGGG
CGAGAGTGTCACCATTGCAGTGGGTGCCACTGAGGAGGACACCGCCGCCT
GTCTGCAGGCTGTACTCAGCGGGCACGAGGATGCGGCCAGTGCTCTGGCC
ACCGAAGTCCATCGGGATGTCAGCTTCAGCAGCGAAAAGCTGGGCGAGAT
TGCCCAACTGCCGGACGAACTGGATTACGGCAATTTGGGCATCTGGATCG
ATCCAATTGACGCTACCGCCGAGTACATTTCGGGTGACACCATGTTCACC
GACTTTCCCGGCATCACGTCCACTGGCCTGGACTGCGTCACCGTGCTAAT
TGGCGTCTACGAACGGGACACCGGCGTACCGGTGATGGGAGTGGTGGCTC
AACCGTTCGGGGAGAAGCTGGAGGAGAACGTGTACAGCTCCTCGATGTTC
TGGGGCGTCTGCCTGCCGACGGTAAGGGCACACAACTGCGACTTTGAGGC
GCGCGATGAGAACCGCCGTTTGGGCATCTTCTCCAGCTCGGAACAGTCCG
ATATCCTTCAGCGTTTCCTCGATCTGGGCTACGAGTTTGCATTCTCCGCC
GGTGCTGGACATAAGGCCTTGAAGGTGATTACCCACGAGGTGGATGTGTA
TCTGCTTAGCAAAGGCTCCACCTTCAAGTGGGACACGTGTGCTCCGCAAG
CCATACTCCGTGCGCTCGGCGGAGATGTGCTGGACTATGCGGCCAGTGTG
GCGGAGCAAAAGGCAGTGCCATTGAAGTACCTGATTGAGGATGCTGAAGC
CGATGCCGATTGGAAGCGAAACGCGGGTGGTATAATCTCTGTGCGCAATG
TCGATGTTGTGGATGAGCTGCTGGCCAAATTGGCCGAGCAATGAAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCTCTAGGTAAAGTTGGTCCGATT
AATTTCTCAT
BS12955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1128 | CG3028-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1402 | CG3028-RA | 134..1261 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13959698..13960333 | 509..1144 | 3180 | 100 | Plus |
| 3R | 32079331 | 3R | 13958922..13959414 | 17..509 | 2465 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1307..1363 | 603..546 | 125 | 72.9 | Minus |
BS12955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:35 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 1..1128 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 10:00:53 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 172..1304 | 17..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:57 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 172..1304 | 17..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:58 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 172..1298 | 17..1143 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:19 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 134..1266 | 17..1150 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:19 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13958922..13959414 | 17..509 | 100 | -> | Plus |
| 3R | 13959699..13960338 | 510..1150 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:57 Download gff for
BS12955.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9784644..9785136 | 17..509 | 100 | -> | Plus |
| arm_3R | 9785421..9786060 | 510..1150 | 99 | | Plus |
BS12955.5prime Sequence
669 bp (666 high quality bases) assembled on 2006-10-13
> BS12955.5prime
GAAGTTATCAGTCGACATGAGCGGCGTGGAGGAGCAGGCGAGTCTGCTGC
GCGTACTGATCAACTGTGCGGAGAAGGCGGCCAACATAGCCAGGATATGT
CGCTCCAACGAGCAGCTCCTGGCATTGCTGGTGCAGGAGAAGATCGGATC
CGAGGCCAATGAGCGCTTCGAGCACGACTTCAAGACCCTGGCCGATGTGC
TCATCCAGGAGACGATCAAGCACGAGGTGGGTGCGCTCTTTCCTGCCATG
AAGGATGCCATCCTGGGCGAGGAATCGCCCAATTTCACCAACCAACTGGG
CGAGAGTGTCACCATTGCAGTGGGTGCCACTGAGGAGGACACCGCCGCCT
GTCTGCAGGCTGTACTCAGCGGGCACGAGGATGCGGCCAGTGCTCTGGCC
ACCGAAGTCCATCGGGATGTCAGCTTCAGCAGCGAAAAGCTGGGCGAGAT
TGCCCAACTGCCGGACGAACTGGATTACGGCAATTTGGGCATCTGGATCG
ATCCAATTGACGCTACCGCCGAGTACATTTCGGGTGACACCATGTTCACC
GACTTTCCCGGCATCACGTCCACTGGCCTGGACTGCGTCACCGTGCTAAT
TGGCGTCTACGAACGGGACACCGGCGTACCGGTGATGGGAGTGGTGGCTC
AACCGTTCGGGGAGAAGCT
BS12955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3028-PA | 1128 | Ipp-RA | 1..653 | 17..669 | 3265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-RA | 1402 | CG3028-RA | 134..786 | 17..669 | 3265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13958922..13959414 | 17..509 | 2465 | 100 | Plus |
| 3R | 32079331 | 3R | 13959698..13959858 | 509..669 | 805 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:56:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1307..1363 | 603..546 | 125 | 72.9 | Minus |
BS12955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:25 Download gff for
BS12955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3028-PA | 1..653 | 17..669 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:15 Download gff for
BS12955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 168..824 | 9..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:36:33 Download gff for
BS12955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipp-RA | 130..786 | 9..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:36:33 Download gff for
BS12955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13958918..13959414 | 9..509 | 99 | -> | Plus |
| 3R | 13959699..13959858 | 510..669 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:15 Download gff for
BS12955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9784640..9785136 | 9..509 | 99 | -> | Plus |
| arm_3R | 9785421..9785580 | 510..669 | 100 | | Plus |
BS12955.pep Sequence
Translation from 16 to 1143
> BS12955.pep
MSGVEEQASLLRVLINCAEKAANIARICRSNEQLLALLVQEKIGSEANER
FEHDFKTLADVLIQETIKHEVGALFPAMKDAILGEESPNFTNQLGESVTI
AVGATEEDTAACLQAVLSGHEDAASALATEVHRDVSFSSEKLGEIAQLPD
ELDYGNLGIWIDPIDATAEYISGDTMFTDFPGITSTGLDCVTVLIGVYER
DTGVPVMGVVAQPFGEKLEENVYSSSMFWGVCLPTVRAHNCDFEARDENR
RLGIFSSSEQSDILQRFLDLGYEFAFSAGAGHKALKVITHEVDVYLLSKG
STFKWDTCAPQAILRALGGDVLDYAASVAEQKAVPLKYLIEDAEADADWK
RNAGGIISVRNVDVVDELLAKLAEQ*
BS12955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipp-PA | 375 | CG3028-PA | 1..375 | 1..375 | 1907 | 100 | Plus |
| CG7789-PA | 306 | CG7789-PA | 113..256 | 159..319 | 157 | 27.4 | Plus |
