Clone BS12957 Report

Search the DGRC for BS12957

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptMdh2-RA
Protein status:BS12957.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12957.3prime Sequence

791 bp (687 high quality bases) assembled on 2006-10-13

> BS12957.3prime
ATGGTCTAGAAAGCTTTTAGGCGTTGGCAAAGTCAATGCCCTTCTGGATG
TTCTTCTTCAGCTCGGGAATGGCGGCCTCCAGCAGCTTCTTCTCGTAGTC
GTTGAGCTTGGGCAGGCCGAGGTTCTCCTGGACGCCGTTCTTGCCCAGCA
CCAGGGGTGTGGAGAAGAAGGTAGCCTCCGTGACGGTGGACTGCACGTAG
GAGCACTCGATAACGTTCTTCTCGCCGTTCAGTCCCTTCAGCAGGGAGCC
GGCGAAACGGGCACCAGCGTAGGCCATCGACAGAGTGGCGGAACCGGCTC
CGGCCTTGGCCTTAACGACCTCAGTACCGGCCTCCTGGATGCGCACGGTA
AGCTTCTCGATGGTGTCCTGGTTGCCCTTGAACAGGGGCTGGCTCTGGGA
GAGCACAGGCAGGATGGTCACGCCGGAGTGGCCGCCGATCACGGGGATCT
GCACGGTCTGGGGATCCACACCAAGGGCATGGCCGATGAAGGCACGGGCA
CGCACCACATCCAAGGTGGAGACTCCGAACAGACGCTTGGGATCGTAAAC
ACCAGCCTTCTTGAGGATCTCGGCAGCGATGGGCACGCAGGTGTTCACCG
GGTTGGTGATGATGGCCACCAGGGCCTTGGGGCAGTTCTTGGCAATGGAG
TTGGAGATGTCCTTGATGATGCCGGCGTTCACGTTGAACAGATCATCGCG
GGTCATGCCCGGCTTGCGGGGCACACCAGCGGGAATGACCACCACATCGG
ATCCCTTCAGGGAGTCACCCAGCTGGTCGGCTCCGATGAAT

BS12957.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7998-PA 1011 CG7998-RA 237..1011 791..17 3875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mdh2-RA 1335 CG7998-RA 342..1116 791..17 3875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18227958..18228499 558..17 2710 100 Minus
3R 32079331 3R 18227704..18227902 754..556 995 100 Minus
3R 32079331 3R 18226900..18226938 791..753 195 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:06:04 has no hits.

BS12957.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:26 Download gff for BS12957.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7998-PA 237..1011 17..791 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:40 Download gff for BS12957.3prime
Subject Subject Range Query Range Percent Splice Strand
Mdh2-RA 342..1122 9..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:23 Download gff for BS12957.3prime
Subject Subject Range Query Range Percent Splice Strand
Mdh2-RA 342..1122 9..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:23 Download gff for BS12957.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18226900..18226937 754..791 100 -> Minus
3R 18227705..18227901 557..753 100 -> Minus
3R 18227960..18228499 17..556 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:40 Download gff for BS12957.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14052622..14052659 754..791 100 -> Minus
arm_3R 14053427..14053623 557..753 100 -> Minus
arm_3R 14053682..14054221 17..556 100 -> Minus

BS12957.5prime Sequence

821 bp (733 high quality bases) assembled on 2006-10-13

> BS12957.5prime
GAAGTTATCAGTCGACATGCTGAAGCAAGTGACGAAGCAATTGGCCCTGC
AGGGAGTGCGCACCTTCTCGGTTGGCCAGCAGAACAACTACAAGGTGACC
GTTTGCGGTGCCGCTGGAGGAATCGGCCAGCCGCTGTCGCTGCTCCTCAA
GCAGAATCCCCTGGTCACCGACTTGGCGCTCTACGATATCGTTCATACGC
CCGGTGTGGCCGCCGATCTGTCGCATATCGACACCAAGAGCAAGACCGCC
GGATTCATCGGAGCCGACCAGCTGGGTGACTCCCTGAAGGGATCCGATGT
GGTGGTCATTCCCGCTGGTGTGCCCCGCAAGCCGGGCATGACCCGCGATG
ATCTGTTCAACGTGAACGCCGGCATCATCAAGGACATCTCCAACTCCATT
GCCAAGAACTGCCCCAAGGCCCTGGTGGCCATCATCACCAACCCGGTGAA
CACCTGCGTGCCCATCGCTGCCGAGATCCTCAAGAAGGCTGGTGTTTACG
ATCCCAAGCGTCTGTTCGGAGTCTCCACCTTGGATGTGGTGCGTGCCCGT
GCCTTCATCGGCCATGCCCTTGGTGTGGATCCCCAGACCGTGCAGATCCC
CGTGATCGGCGGCCACTCCGGCGTGACCATCCTGCCTGTGCTCTCCCAGA
GCCAGCCCCTGTTCAAGGGCAACCAGGACACCATCGAGAAGCTTACCGTG
CGCATCCAGGAGGCCGGTACTGAGGTCGTTAAGGCCAAAGCCGGAGCCGG
TTCCGCCACTCTGTCGATGGCCTACGCTGGTGCCCGTTTCGCCGGCTCCC
TGCTGAAGGGACTGAACGGCG

BS12957.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7998-PA 1011 CG7998-RA 1..805 17..821 4000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Mdh2-RA 1335 CG7998-RA 106..910 17..821 4010 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18227958..18228293 486..821 1665 99.7 Plus
3R 32079331 3R 18226728..18226938 81..291 1055 100 Plus
3R 32079331 3R 18227704..18227902 290..488 995 100 Plus
3R 32079331 3R 18226501..18226566 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:20:29 has no hits.

BS12957.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:27 Download gff for BS12957.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7998-PA 1..805 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:03 Download gff for BS12957.5prime
Subject Subject Range Query Range Percent Splice Strand
Mdh2-RA 106..910 17..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:04 Download gff for BS12957.5prime
Subject Subject Range Query Range Percent Splice Strand
Mdh2-RA 106..910 17..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:04 Download gff for BS12957.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18226501..18226566 17..82 100 -> Plus
3R 18226730..18226937 83..290 100 -> Plus
3R 18227705..18227901 291..487 100 -> Plus
3R 18227960..18228293 488..821 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:03 Download gff for BS12957.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14052223..14052288 17..82 100 -> Plus
arm_3R 14052452..14052659 83..290 100 -> Plus
arm_3R 14053427..14053623 291..487 100 -> Plus
arm_3R 14053682..14054015 488..821 99   Plus

BS12957.complete Sequence

1043 bp assembled on 2006-11-01

GenBank Submission: FJ638850

> BS12957.complete
GAAGTTATCAGTCGACATGCTGAAGCAAGTGACGAAGCAATTGGCCCTGC
AGGGAGTGCGCACCTTCTCGGTTGGCCAGCAGAACAACTACAAGGTGACC
GTTTGCGGTGCCGCTGGAGGAATCGGCCAGCCGCTGTCGCTGCTCCTCAA
GCAGAATCCCCTGGTCACCGACTTGGCGCTCTACGATATCGTTCATACGC
CCGGTGTGGCCGCCGATCTGTCGCATATCGACACCAAGAGCAAGACCGCC
GGATTCATCGGAGCCGACCAGCTGGGTGACTCCCTGAAGGGATCCGATGT
GGTGGTCATTCCCGCTGGTGTGCCCCGCAAGCCGGGCATGACCCGCGATG
ATCTGTTCAACGTGAACGCCGGCATCATCAAGGACATCTCCAACTCCATT
GCCAAGAACTGCCCCAAGGCCCTGGTGGCCATCATCACCAACCCGGTGAA
CACCTGCGTGCCCATCGCTGCCGAGATCCTCAAGAAGGCTGGTGTTTACG
ATCCCAAGCGTCTGTTCGGAGTCTCCACCTTGGATGTGGTGCGTGCCCGT
GCCTTCATCGGCCATGCCCTTGGTGTGGATCCCCAGACCGTGCAGATCCC
CGTGATCGGCGGCCACTCCGGCGTGACCATCCTGCCTGTGCTCTCCCAGA
GCCAGCCCCTGTTCAAGGGCAACCAGGACACCATCGAGAAGCTTACCGTG
CGCATCCAGGAGGCCGGTACTGAGGTCGTTAAGGCCAAGGCCGGAGCCGG
TTCCGCCACTCTGTCGATGGCCTACGCTGGTGCCCGTTTCGCCGGCTCCC
TGCTGAAGGGACTGAACGGCGAGAAGAACGTTATCGAGTGCTCCTACGTG
CAGTCCACCGTCACGGAGGCTACCTTCTTCTCCACACCCCTGGTGCTGGG
CAAGAACGGCGTCCAGGAGAACCTCGGCCTGCCCAAGCTCAACGACTACG
AGAAGAAGCTGCTGGAGGCCGCCATTCCCGAGCTGAAGAAGAACATCCAG
AAGGGCATTGACTTTGCCAACGCCTAAAAGCTTTCTAGACCAT

BS12957.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mdh2-RA 1011 CG7998-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mdh2-RA 1335 CG7998-RA 106..1116 17..1027 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18227958..18228499 486..1027 2710 100 Plus
3R 32079331 3R 18226728..18226938 81..291 1055 100 Plus
3R 32079331 3R 18227704..18227902 290..488 995 100 Plus
3R 32079331 3R 18226501..18226566 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:58:16 has no hits.

BS12957.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:21 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
CG7998-RA 1..1011 17..1027 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:29 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
CG7998-RA 111..1127 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:27 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
Mdh2-RA 106..1114 17..1025 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:21 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
CG7998-RA 111..1127 17..1035 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:56 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
Mdh2-RA 106..1114 17..1025 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:56 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18227705..18227901 291..487 100 -> Plus
3R 18226501..18226566 17..82 100 -> Plus
3R 18226730..18226937 83..290 100 -> Plus
3R 18227960..18228497 488..1025 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:27 Download gff for BS12957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14052223..14052288 17..82 100 -> Plus
arm_3R 14052452..14052659 83..290 100 -> Plus
arm_3R 14053427..14053623 291..487 100 -> Plus
arm_3R 14053682..14054219 488..1025 100   Plus

BS12957.pep Sequence

Translation from 16 to 1026

> BS12957.pep
MLKQVTKQLALQGVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLV
TDLALYDIVHTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPA
GVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPI
AAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGGH
SGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLS
MAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQ
ENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDFANA*

BS12957.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Mdh2-PA 336 CG7998-PA 1..336 1..336 1688 100 Plus
CG10749-PA 347 CG10749-PA 29..336 26..331 898 57.5 Plus
CG10748-PA 349 CG10748-PA 24..332 26..334 856 52.4 Plus