Clone Sequence Records
BS12957.3prime Sequence
791 bp (687 high quality bases) assembled on 2006-10-13
> BS12957.3prime
ATGGTCTAGAAAGCTTTTAGGCGTTGGCAAAGTCAATGCCCTTCTGGATG
TTCTTCTTCAGCTCGGGAATGGCGGCCTCCAGCAGCTTCTTCTCGTAGTC
GTTGAGCTTGGGCAGGCCGAGGTTCTCCTGGACGCCGTTCTTGCCCAGCA
CCAGGGGTGTGGAGAAGAAGGTAGCCTCCGTGACGGTGGACTGCACGTAG
GAGCACTCGATAACGTTCTTCTCGCCGTTCAGTCCCTTCAGCAGGGAGCC
GGCGAAACGGGCACCAGCGTAGGCCATCGACAGAGTGGCGGAACCGGCTC
CGGCCTTGGCCTTAACGACCTCAGTACCGGCCTCCTGGATGCGCACGGTA
AGCTTCTCGATGGTGTCCTGGTTGCCCTTGAACAGGGGCTGGCTCTGGGA
GAGCACAGGCAGGATGGTCACGCCGGAGTGGCCGCCGATCACGGGGATCT
GCACGGTCTGGGGATCCACACCAAGGGCATGGCCGATGAAGGCACGGGCA
CGCACCACATCCAAGGTGGAGACTCCGAACAGACGCTTGGGATCGTAAAC
ACCAGCCTTCTTGAGGATCTCGGCAGCGATGGGCACGCAGGTGTTCACCG
GGTTGGTGATGATGGCCACCAGGGCCTTGGGGCAGTTCTTGGCAATGGAG
TTGGAGATGTCCTTGATGATGCCGGCGTTCACGTTGAACAGATCATCGCG
GGTCATGCCCGGCTTGCGGGGCACACCAGCGGGAATGACCACCACATCGG
ATCCCTTCAGGGAGTCACCCAGCTGGTCGGCTCCGATGAAT
BS12957.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7998-PA | 1011 | CG7998-RA | 237..1011 | 791..17 | 3875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mdh2-RA | 1335 | CG7998-RA | 342..1116 | 791..17 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18227958..18228499 | 558..17 | 2710 | 100 | Minus |
3R | 32079331 | 3R | 18227704..18227902 | 754..556 | 995 | 100 | Minus |
3R | 32079331 | 3R | 18226900..18226938 | 791..753 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:06:04 has no hits.
BS12957.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:26 Download gff for
BS12957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7998-PA | 237..1011 | 17..791 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:44:40 Download gff for
BS12957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh2-RA | 342..1122 | 9..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:22:23 Download gff for
BS12957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh2-RA | 342..1122 | 9..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:22:23 Download gff for
BS12957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18226900..18226937 | 754..791 | 100 | -> | Minus |
3R | 18227705..18227901 | 557..753 | 100 | -> | Minus |
3R | 18227960..18228499 | 17..556 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:44:40 Download gff for
BS12957.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14052622..14052659 | 754..791 | 100 | -> | Minus |
arm_3R | 14053427..14053623 | 557..753 | 100 | -> | Minus |
arm_3R | 14053682..14054221 | 17..556 | 100 | -> | Minus |
BS12957.5prime Sequence
821 bp (733 high quality bases) assembled on 2006-10-13
> BS12957.5prime
GAAGTTATCAGTCGACATGCTGAAGCAAGTGACGAAGCAATTGGCCCTGC
AGGGAGTGCGCACCTTCTCGGTTGGCCAGCAGAACAACTACAAGGTGACC
GTTTGCGGTGCCGCTGGAGGAATCGGCCAGCCGCTGTCGCTGCTCCTCAA
GCAGAATCCCCTGGTCACCGACTTGGCGCTCTACGATATCGTTCATACGC
CCGGTGTGGCCGCCGATCTGTCGCATATCGACACCAAGAGCAAGACCGCC
GGATTCATCGGAGCCGACCAGCTGGGTGACTCCCTGAAGGGATCCGATGT
GGTGGTCATTCCCGCTGGTGTGCCCCGCAAGCCGGGCATGACCCGCGATG
ATCTGTTCAACGTGAACGCCGGCATCATCAAGGACATCTCCAACTCCATT
GCCAAGAACTGCCCCAAGGCCCTGGTGGCCATCATCACCAACCCGGTGAA
CACCTGCGTGCCCATCGCTGCCGAGATCCTCAAGAAGGCTGGTGTTTACG
ATCCCAAGCGTCTGTTCGGAGTCTCCACCTTGGATGTGGTGCGTGCCCGT
GCCTTCATCGGCCATGCCCTTGGTGTGGATCCCCAGACCGTGCAGATCCC
CGTGATCGGCGGCCACTCCGGCGTGACCATCCTGCCTGTGCTCTCCCAGA
GCCAGCCCCTGTTCAAGGGCAACCAGGACACCATCGAGAAGCTTACCGTG
CGCATCCAGGAGGCCGGTACTGAGGTCGTTAAGGCCAAAGCCGGAGCCGG
TTCCGCCACTCTGTCGATGGCCTACGCTGGTGCCCGTTTCGCCGGCTCCC
TGCTGAAGGGACTGAACGGCG
BS12957.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7998-PA | 1011 | CG7998-RA | 1..805 | 17..821 | 4000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mdh2-RA | 1335 | CG7998-RA | 106..910 | 17..821 | 4010 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18227958..18228293 | 486..821 | 1665 | 99.7 | Plus |
3R | 32079331 | 3R | 18226728..18226938 | 81..291 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 18227704..18227902 | 290..488 | 995 | 100 | Plus |
3R | 32079331 | 3R | 18226501..18226566 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:20:29 has no hits.
BS12957.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:27 Download gff for
BS12957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7998-PA | 1..805 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:03 Download gff for
BS12957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh2-RA | 106..910 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:04 Download gff for
BS12957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh2-RA | 106..910 | 17..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:04 Download gff for
BS12957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18226501..18226566 | 17..82 | 100 | -> | Plus |
3R | 18226730..18226937 | 83..290 | 100 | -> | Plus |
3R | 18227705..18227901 | 291..487 | 100 | -> | Plus |
3R | 18227960..18228293 | 488..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:03 Download gff for
BS12957.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14052223..14052288 | 17..82 | 100 | -> | Plus |
arm_3R | 14052452..14052659 | 83..290 | 100 | -> | Plus |
arm_3R | 14053427..14053623 | 291..487 | 100 | -> | Plus |
arm_3R | 14053682..14054015 | 488..821 | 99 | | Plus |
BS12957.complete Sequence
1043 bp assembled on 2006-11-01
GenBank Submission: FJ638850
> BS12957.complete
GAAGTTATCAGTCGACATGCTGAAGCAAGTGACGAAGCAATTGGCCCTGC
AGGGAGTGCGCACCTTCTCGGTTGGCCAGCAGAACAACTACAAGGTGACC
GTTTGCGGTGCCGCTGGAGGAATCGGCCAGCCGCTGTCGCTGCTCCTCAA
GCAGAATCCCCTGGTCACCGACTTGGCGCTCTACGATATCGTTCATACGC
CCGGTGTGGCCGCCGATCTGTCGCATATCGACACCAAGAGCAAGACCGCC
GGATTCATCGGAGCCGACCAGCTGGGTGACTCCCTGAAGGGATCCGATGT
GGTGGTCATTCCCGCTGGTGTGCCCCGCAAGCCGGGCATGACCCGCGATG
ATCTGTTCAACGTGAACGCCGGCATCATCAAGGACATCTCCAACTCCATT
GCCAAGAACTGCCCCAAGGCCCTGGTGGCCATCATCACCAACCCGGTGAA
CACCTGCGTGCCCATCGCTGCCGAGATCCTCAAGAAGGCTGGTGTTTACG
ATCCCAAGCGTCTGTTCGGAGTCTCCACCTTGGATGTGGTGCGTGCCCGT
GCCTTCATCGGCCATGCCCTTGGTGTGGATCCCCAGACCGTGCAGATCCC
CGTGATCGGCGGCCACTCCGGCGTGACCATCCTGCCTGTGCTCTCCCAGA
GCCAGCCCCTGTTCAAGGGCAACCAGGACACCATCGAGAAGCTTACCGTG
CGCATCCAGGAGGCCGGTACTGAGGTCGTTAAGGCCAAGGCCGGAGCCGG
TTCCGCCACTCTGTCGATGGCCTACGCTGGTGCCCGTTTCGCCGGCTCCC
TGCTGAAGGGACTGAACGGCGAGAAGAACGTTATCGAGTGCTCCTACGTG
CAGTCCACCGTCACGGAGGCTACCTTCTTCTCCACACCCCTGGTGCTGGG
CAAGAACGGCGTCCAGGAGAACCTCGGCCTGCCCAAGCTCAACGACTACG
AGAAGAAGCTGCTGGAGGCCGCCATTCCCGAGCTGAAGAAGAACATCCAG
AAGGGCATTGACTTTGCCAACGCCTAAAAGCTTTCTAGACCAT
BS12957.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mdh2-RA | 1011 | CG7998-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mdh2-RA | 1335 | CG7998-RA | 106..1116 | 17..1027 | 5055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18227958..18228499 | 486..1027 | 2710 | 100 | Plus |
3R | 32079331 | 3R | 18226728..18226938 | 81..291 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 18227704..18227902 | 290..488 | 995 | 100 | Plus |
3R | 32079331 | 3R | 18226501..18226566 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:58:16 has no hits.
BS12957.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:21 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7998-RA | 1..1011 | 17..1027 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:29 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7998-RA | 111..1127 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:27 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh2-RA | 106..1114 | 17..1025 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:21 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7998-RA | 111..1127 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:56 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mdh2-RA | 106..1114 | 17..1025 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:56 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18227705..18227901 | 291..487 | 100 | -> | Plus |
3R | 18226501..18226566 | 17..82 | 100 | -> | Plus |
3R | 18226730..18226937 | 83..290 | 100 | -> | Plus |
3R | 18227960..18228497 | 488..1025 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:27 Download gff for
BS12957.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14052223..14052288 | 17..82 | 100 | -> | Plus |
arm_3R | 14052452..14052659 | 83..290 | 100 | -> | Plus |
arm_3R | 14053427..14053623 | 291..487 | 100 | -> | Plus |
arm_3R | 14053682..14054219 | 488..1025 | 100 | | Plus |
BS12957.pep Sequence
Translation from 16 to 1026
> BS12957.pep
MLKQVTKQLALQGVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLV
TDLALYDIVHTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPA
GVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAIITNPVNTCVPI
AAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGGH
SGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLS
MAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQ
ENLGLPKLNDYEKKLLEAAIPELKKNIQKGIDFANA*
BS12957.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mdh2-PA | 336 | CG7998-PA | 1..336 | 1..336 | 1688 | 100 | Plus |
CG10749-PA | 347 | CG10749-PA | 29..336 | 26..331 | 898 | 57.5 | Plus |
CG10748-PA | 349 | CG10748-PA | 24..332 | 26..334 | 856 | 52.4 | Plus |