Clone BS12961 Report

Search the DGRC for BS12961

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG16865-RA
Protein status:BS12961.pep: full length peptide match
Sequenced Size:776

Clone Sequence Records

BS12961.complete Sequence

776 bp assembled on 2010-02-09

GenBank Submission: KX802988

> BS12961.complete
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCTACT
GGAAAGATAGAAGCTTTCTAGACCAT

BS12961.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 744 CG16865-PB 1..744 17..760 3720 100 Plus
CG16865-RA 744 CG16865-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 123..867 16..760 3725 100 Plus
CG16865-RA 915 CG16865-RA 123..867 16..760 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 297..604 1540 100 Plus
2L 23513712 2L 13811825..13811986 137..298 810 100 Plus
2L 23513712 2L 13812478..13812634 604..760 785 100 Plus
2L 23513712 2L 13811644..13811765 16..137 610 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:53:36 has no hits.

BS12961.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:36 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 1..744 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:27 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 120..863 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:26 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 124..867 17..760 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:21 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 120..863 17..760 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:29 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 124..867 17..760 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:29 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13811826..13811986 138..298 100 -> Plus
2L 13812052..13812357 299..604 100 -> Plus
2L 13812479..13812634 605..760 100   Plus
2L 13811645..13811765 17..137 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:26 Download gff for BS12961.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811645..13811765 17..137 100 -> Plus
arm_2L 13811826..13811986 138..298 100 -> Plus
arm_2L 13812052..13812357 299..604 100 -> Plus
arm_2L 13812479..13812634 605..760 100   Plus

BS12961.3prime Sequence

774 bp (761 high quality bases) assembled on 2006-10-13

> BS12961.3prime
ATGGTCTAGAAAGCTTCTATCTTTCCAGTAGCGTGCCGCGCTGCTTCTTC
TGCGGCGGAGGTGCGTCCTCTGTCTTGGTTTTGATGCCCACATCGCTCAA
TTTTCCGCCTTTGCGCTGCAGTTGCTTCTCGATAATCCTTGCGTTGTTCG
CATAGCTGTCTGCGATCTCGCGCGCCTCGATTTCATCCTCCTCCTCGTCG
ATGGTAGACACCGTGACCGAGCTGAACTTGCCCATGTTCTTCGTGTGTCT
GGTGACGACGACCTTCTTGCCACTGGCATCCACAATACCCGAATCGTCTG
GACCGGCGGAAGTCGCTGGCTTGGCAGCCGGTGCCTTGAAACTGCCCTTG
ATCTCCGAATTCAGCAGCTGTGTGAGAGGACTCTCACCCTTGTTGCGGAT
TAGGGCATTGGACATGACGAAGGTTACGTGGGAGTCGGGACTGTGGCGAT
AGTAAAGCGGCAGACTGCAGCTTCGGCACTTGTAGCGGTACTGCTTCTCG
ATCCCATTGCCCCTGCTCTTGCGTTTGATGTAGACCATCCTCGGTGTGGG
ATTGTGGGTGAGTTTGTTGGCATGGTCGTTGGCGTTTATCACACGGGCGT
TGTCCACCTCTCGTAGCGGCAACTGTTCGAGGGTGCAATCCAGAATCAGA
GCCATCTTGTTGCACAGACAGTAGTAAATGTTTAGCGGCTTTTCCTCGTT
GTACTCCTCCTGATCCTTGGTATCGGAGCAGACGATACTGCGCGACACTA
CTTTGGGCATGTCAACTGATAACT

BS12961.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-PA 744 CG16865-RA 1..744 760..17 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 123..867 761..17 3725 100 Minus
CG16865-RA 915 CG16865-RA 123..867 761..17 3725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 480..173 1540 100 Minus
2L 23513712 2L 13811825..13811986 640..479 810 100 Minus
2L 23513712 2L 13812478..13812634 173..17 785 100 Minus
2L 23513712 2L 13811644..13811765 761..640 610 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:56:43 has no hits.

BS12961.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:29 Download gff for BS12961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-PA 1..744 17..760 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:18 Download gff for BS12961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 115..867 17..768 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:15 Download gff for BS12961.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 115..867 17..768 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:15 Download gff for BS12961.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13811636..13811765 640..768 96 -> Minus
2L 13811826..13811986 479..639 100 -> Minus
2L 13812052..13812357 173..478 100 -> Minus
2L 13812479..13812634 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:18 Download gff for BS12961.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811636..13811765 640..768 96 -> Minus
arm_2L 13811826..13811986 479..639 100 -> Minus
arm_2L 13812052..13812357 173..478 100 -> Minus
arm_2L 13812479..13812634 17..172 100   Minus

BS12961.5prime Sequence

775 bp (704 high quality bases) assembled on 2006-10-13

> BS12961.5prime
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAGGAAGCAGCGCGGCACGCTACT
GGAAAGATAGAAGCTTTTCTAGACC

BS12961.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-PA 744 CG16865-RA 1..744 17..760 3695 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 123..867 16..760 3710 99.9 Plus
CG16865-RA 915 CG16865-RA 123..867 16..760 3710 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 297..604 1540 100 Plus
2L 23513712 2L 13811825..13811986 137..298 810 100 Plus
2L 23513712 2L 13812478..13812634 604..760 770 99.4 Plus
2L 23513712 2L 13811644..13811765 16..137 610 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:04:51 has no hits.

BS12961.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:30 Download gff for BS12961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-PA 1..744 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:33 Download gff for BS12961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 123..867 16..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:01 Download gff for BS12961.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 123..867 16..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:01 Download gff for BS12961.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13812479..13812634 605..760 99   Plus
2L 13811644..13811765 16..137 100 -> Plus
2L 13811826..13811986 138..298 100 -> Plus
2L 13812052..13812357 299..604 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:33 Download gff for BS12961.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811644..13811765 16..137 100 -> Plus
arm_2L 13811826..13811986 138..298 100 -> Plus
arm_2L 13812052..13812357 299..604 100 -> Plus
arm_2L 13812479..13812634 605..760 99   Plus

BS12961.pep Sequence

Translation from 16 to 759

> BS12961.pep
MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLR
EVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSL
PLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPAT
SAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIA
DSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLER*

BS12961.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-PB 247 CG16865-PB 1..247 1..247 1280 100 Plus
CG16865-PA 247 CG16865-PA 1..247 1..247 1280 100 Plus