Clone Sequence Records
BS12961.complete Sequence
776 bp assembled on 2010-02-09
GenBank Submission: KX802988
> BS12961.complete
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAAGAAGCAGCGCGGCACGCTACT
GGAAAGATAGAAGCTTTCTAGACCAT
BS12961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 744 | CG16865-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
CG16865-RA | 744 | CG16865-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 1549 | CG16865-RB | 123..867 | 16..760 | 3725 | 100 | Plus |
CG16865-RA | 915 | CG16865-RA | 123..867 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13812050..13812357 | 297..604 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13811825..13811986 | 137..298 | 810 | 100 | Plus |
2L | 23513712 | 2L | 13812478..13812634 | 604..760 | 785 | 100 | Plus |
2L | 23513712 | 2L | 13811644..13811765 | 16..137 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:53:36 has no hits.
BS12961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:15:36 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:27 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 120..863 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:26 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 124..867 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:21 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 120..863 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:29 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 124..867 | 17..760 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:29 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
2L | 13812479..13812634 | 605..760 | 100 | | Plus |
2L | 13811645..13811765 | 17..137 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:26 Download gff for
BS12961.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13811645..13811765 | 17..137 | 100 | -> | Plus |
arm_2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
arm_2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
arm_2L | 13812479..13812634 | 605..760 | 100 | | Plus |
BS12961.3prime Sequence
774 bp (761 high quality bases) assembled on 2006-10-13
> BS12961.3prime
ATGGTCTAGAAAGCTTCTATCTTTCCAGTAGCGTGCCGCGCTGCTTCTTC
TGCGGCGGAGGTGCGTCCTCTGTCTTGGTTTTGATGCCCACATCGCTCAA
TTTTCCGCCTTTGCGCTGCAGTTGCTTCTCGATAATCCTTGCGTTGTTCG
CATAGCTGTCTGCGATCTCGCGCGCCTCGATTTCATCCTCCTCCTCGTCG
ATGGTAGACACCGTGACCGAGCTGAACTTGCCCATGTTCTTCGTGTGTCT
GGTGACGACGACCTTCTTGCCACTGGCATCCACAATACCCGAATCGTCTG
GACCGGCGGAAGTCGCTGGCTTGGCAGCCGGTGCCTTGAAACTGCCCTTG
ATCTCCGAATTCAGCAGCTGTGTGAGAGGACTCTCACCCTTGTTGCGGAT
TAGGGCATTGGACATGACGAAGGTTACGTGGGAGTCGGGACTGTGGCGAT
AGTAAAGCGGCAGACTGCAGCTTCGGCACTTGTAGCGGTACTGCTTCTCG
ATCCCATTGCCCCTGCTCTTGCGTTTGATGTAGACCATCCTCGGTGTGGG
ATTGTGGGTGAGTTTGTTGGCATGGTCGTTGGCGTTTATCACACGGGCGT
TGTCCACCTCTCGTAGCGGCAACTGTTCGAGGGTGCAATCCAGAATCAGA
GCCATCTTGTTGCACAGACAGTAGTAAATGTTTAGCGGCTTTTCCTCGTT
GTACTCCTCCTGATCCTTGGTATCGGAGCAGACGATACTGCGCGACACTA
CTTTGGGCATGTCAACTGATAACT
BS12961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-PA | 744 | CG16865-RA | 1..744 | 760..17 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 1549 | CG16865-RB | 123..867 | 761..17 | 3725 | 100 | Minus |
CG16865-RA | 915 | CG16865-RA | 123..867 | 761..17 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13812050..13812357 | 480..173 | 1540 | 100 | Minus |
2L | 23513712 | 2L | 13811825..13811986 | 640..479 | 810 | 100 | Minus |
2L | 23513712 | 2L | 13812478..13812634 | 173..17 | 785 | 100 | Minus |
2L | 23513712 | 2L | 13811644..13811765 | 761..640 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:56:43 has no hits.
BS12961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:29 Download gff for
BS12961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-PA | 1..744 | 17..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:18 Download gff for
BS12961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 115..867 | 17..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:37:15 Download gff for
BS12961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 115..867 | 17..768 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:37:15 Download gff for
BS12961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13811636..13811765 | 640..768 | 96 | -> | Minus |
2L | 13811826..13811986 | 479..639 | 100 | -> | Minus |
2L | 13812052..13812357 | 173..478 | 100 | -> | Minus |
2L | 13812479..13812634 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:18 Download gff for
BS12961.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13811636..13811765 | 640..768 | 96 | -> | Minus |
arm_2L | 13811826..13811986 | 479..639 | 100 | -> | Minus |
arm_2L | 13812052..13812357 | 173..478 | 100 | -> | Minus |
arm_2L | 13812479..13812634 | 17..172 | 100 | | Minus |
BS12961.5prime Sequence
775 bp (704 high quality bases) assembled on 2006-10-13
> BS12961.5prime
GAAGTTATCAGTCGACATGCCCAAAGTAGTGTCGCGCAGTATCGTCTGCT
CCGATACCAAGGATCAGGAGGAGTACAACGAGGAAAAGCCGCTAAACATT
TACTACTGTCTGTGCAACAAGATGGCTCTGATTCTGGATTGCACCCTCGA
ACAGTTGCCGCTACGAGAGGTGGACAACGCCCGTGTGATAAACGCCAACG
ACCATGCCAACAAACTCACCCACAATCCCACACCGAGGATGGTCTACATC
AAACGCAAGAGCAGGGGCAATGGGATCGAGAAGCAGTACCGCTACAAGTG
CCGAAGCTGCAGTCTGCCGCTTTACTATCGCCACAGTCCCGACTCCCACG
TAACCTTCGTCATGTCCAATGCCCTAATCCGCAACAAGGGTGAGAGTCCT
CTCACACAGCTGCTGAATTCGGAGATCAAGGGCAGTTTCAAGGCACCGGC
TGCCAAGCCAGCGACTTCCGCCGGTCCAGACGATTCGGGTATTGTGGATG
CCAGTGGCAAGAAGGTCGTCGTCACCAGACACACGAAGAACATGGGCAAG
TTCAGCTCGGTCACGGTGTCTACCATCGACGAGGAGGAGGATGAAATCGA
GGCGCGCGAGATCGCAGACAGCTATGCGAACAACGCAAGGATTATCGAGA
AGCAACTGCAGCGCAAAGGCGGAAAATTGAGCGATGTGGGCATCAAAACC
AAGACAGAGGACGCACCTCCGCCGCAGAGGAAGCAGCGCGGCACGCTACT
GGAAAGATAGAAGCTTTTCTAGACC
BS12961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-PA | 744 | CG16865-RA | 1..744 | 17..760 | 3695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-RB | 1549 | CG16865-RB | 123..867 | 16..760 | 3710 | 99.9 | Plus |
CG16865-RA | 915 | CG16865-RA | 123..867 | 16..760 | 3710 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13812050..13812357 | 297..604 | 1540 | 100 | Plus |
2L | 23513712 | 2L | 13811825..13811986 | 137..298 | 810 | 100 | Plus |
2L | 23513712 | 2L | 13812478..13812634 | 604..760 | 770 | 99.4 | Plus |
2L | 23513712 | 2L | 13811644..13811765 | 16..137 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:04:51 has no hits.
BS12961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:30 Download gff for
BS12961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-PA | 1..744 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:33 Download gff for
BS12961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 123..867 | 16..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:01 Download gff for
BS12961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16865-RA | 123..867 | 16..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:01 Download gff for
BS12961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13812479..13812634 | 605..760 | 99 | | Plus |
2L | 13811644..13811765 | 16..137 | 100 | -> | Plus |
2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:33 Download gff for
BS12961.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13811644..13811765 | 16..137 | 100 | -> | Plus |
arm_2L | 13811826..13811986 | 138..298 | 100 | -> | Plus |
arm_2L | 13812052..13812357 | 299..604 | 100 | -> | Plus |
arm_2L | 13812479..13812634 | 605..760 | 99 | | Plus |
BS12961.pep Sequence
Translation from 16 to 759
> BS12961.pep
MPKVVSRSIVCSDTKDQEEYNEEKPLNIYYCLCNKMALILDCTLEQLPLR
EVDNARVINANDHANKLTHNPTPRMVYIKRKSRGNGIEKQYRYKCRSCSL
PLYYRHSPDSHVTFVMSNALIRNKGESPLTQLLNSEIKGSFKAPAAKPAT
SAGPDDSGIVDASGKKVVVTRHTKNMGKFSSVTVSTIDEEEDEIEAREIA
DSYANNARIIEKQLQRKGGKLSDVGIKTKTEDAPPPQKKQRGTLLER*
BS12961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16865-PB | 247 | CG16865-PB | 1..247 | 1..247 | 1280 | 100 | Plus |
CG16865-PA | 247 | CG16865-PA | 1..247 | 1..247 | 1280 | 100 | Plus |