Clone Sequence Records
BS12962.5prime Sequence
712 bp (688 high quality bases) assembled on 2006-10-13
> BS12962.5prime
GAAGTTATCAGTCGACATGCTGGACGCTCTAATTCGGGCAGCGGAGCTTG
TGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGATTGATGCAGTGATT
ACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCTTCTGTTT
GGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCGGTCAGGA
ATATCAACGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGATGTGGCG
GACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGAATGTACTCGATTT
TGGTCACTGCATATCCCGATTCATCTGCAACTTACTCATCGATCTGGGTG
ATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGCCATACTATTCCTC
TGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCGTGGCCCATGGCTT
GAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCCCTGCTCC
TCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGATGCTCATCTACCTG
CTGCAACGTGGACGCATTGAAATCTCGACGAAGACGCAAAGCGTTTACCT
ATGGACCCATCATAAATTGCAACACTTCATACACAATGTTTGGTATGTGT
CAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGTCGTGTGCATGGCT
CAAAGCAAGAAC
BS12962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-PA | 825 | CG2617-RA | 1..691 | 17..707 | 3455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 1062 | CG2617-RB | 81..777 | 16..712 | 3470 | 99.9 | Plus |
| CG2617-RA | 1262 | CG2617-RA | 81..777 | 16..712 | 3470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20682448..20683144 | 16..712 | 3470 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:36:50 has no hits.
BS12962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:31 Download gff for
BS12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-PA | 1..696 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:28 Download gff for
BS12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 78..777 | 13..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:44 Download gff for
BS12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 78..777 | 13..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:44 Download gff for
BS12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20682445..20683144 | 13..712 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:28 Download gff for
BS12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20682445..20683144 | 13..712 | 99 | | Plus |
BS12962.3prime Sequence
782 bp (689 high quality bases) assembled on 2006-10-13
> BS12962.3prime
ATGGTCTAGAAAGCTTTCAAACGTAAACTGACAGGAACGACGTAATGTTG
TGCCTGCAGACAGGACAGCGGTCTTCTAAAAGGAGCACGAGCTGCAGGGA
GCACTCTTTGCAGAGGCAGAGGTGCCGGCATGGCATGACTACTACGTTCC
TGCTTTGAGCCATGCACACGACACAGCGTTCTGGACTCGCGGATCCTGCG
TTCTCTGACACATACCAAACATTGTGTATGAAGTGTTGCAATTTATGATG
GGTCCATAGGTAAACGCTTTGCGTCTTCGTCGAGATTTCAATGCGTCCAC
GTTGCAGCAGGTAGATGAGCATCAGGTACACATAGCGGCGGAACATATAG
AGAACGAGGAGCAGGGCCAATCCTATCGAGGCCCGGAACGCACTGTTCAG
CAAGCTCAAGCCATGGGCCACGATTGAGTGCACCACAAAGTCTAGGAGGC
AGTCCCAGAGGAATAGTATGGCCCTCGGCAGCAGCATCAGCAGCCACAAG
ATGCCATCACCCAGATCGATGAGTAAGTTGCAGATGAATCGGGATATGCA
GTGACCAAAATCGAGTACATTCTTGAGCCCGCCTTTGGTGCCGCCGTAGA
AGTAAGTCCGCCACATCTAGCGTGATGAGGCCCAAGTCGCGGATGCCCTC
GTTGATATTCCTGACCGCGCATCTCAACAGATTCCTTCCTTTCCTGCTGC
CCTCCACCAAACAGAAACCGACGAGGTAACTTGCCCACAGGAAGTAATAC
ACGCCAGTAATCACTGCATCAATCACGCTGGC
BS12962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-PA | 825 | CG2617-RA | 238..825 | 604..17 | 2940 | 100 | Minus |
| CG2617-PA | 825 | CG2617-RA | 61..238 | 782..605 | 740 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 1062 | CG2617-RB | 142..906 | 782..17 | 3715 | 99.1 | Minus |
| CG2617-RA | 1262 | CG2617-RA | 142..906 | 782..17 | 3715 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20682509..20683273 | 782..17 | 3690 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:13:44 has no hits.
BS12962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:30 Download gff for
BS12962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-PA | 61..825 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:11 Download gff for
BS12962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 142..906 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:21 Download gff for
BS12962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 142..906 | 17..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:21 Download gff for
BS12962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20682509..20683276 | 14..782 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:11 Download gff for
BS12962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20682509..20683276 | 14..782 | 98 | -> | Minus |
BS12962.complete Sequence
857 bp assembled on 2006-11-01
GenBank Submission: FJ637342
> BS12962.complete
GAAGTTATCAGTCGACATGCTGGACGCTCTAATTCGGGCAGCGGAGCTTG
TGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGATTGATGCAGTGATT
ACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCTTCTGTTT
GGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCGGTCAGGA
ATATCAACGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGATGTGGCG
GACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGAATGTACTCGATTT
TGGTCACTGCATATCCCGATTCATCTGCAACTTACTCATCGATCTGGGTG
ATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGCCATACTATTCCTC
TGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCGTGGCCCATGGCTT
GAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCCCTGCTCC
TCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGATGCTCATCTACCTG
CTGCAACGTGGACGCATTGAAATCTCGACGAAGACGCAAAGCGTTTACCT
ATGGACCCATCATAAATTGCAACACTTCATACACAATGTTTGGTATGTGT
CAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGTCGTGTGCATGGCT
CAAAGCAGGAACGTAGTAGTCATGCCATGCCGGCACCTCTGCCTCTGCAA
AGAGTGCTCCCTGCAGCTCGTGCTCCTTTTAGAAGACCGCTGTCCTGTCT
GCAGGCACAACATTACGTCGTTCCTGTCAGTTTACGTTTGAAAGCTTTCT
AGACCAT
BS12962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 825 | CG2617-PB | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG2617-RA | 825 | CG2617-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 1062 | CG2617-RB | 81..906 | 16..841 | 4130 | 100 | Plus |
| CG2617-RA | 1262 | CG2617-RA | 81..906 | 16..841 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20682448..20683273 | 16..841 | 4130 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:43 has no hits.
BS12962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:07 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:09 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 76..904 | 13..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:40 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 82..905 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:07 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 76..904 | 13..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:13 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 82..905 | 17..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:13 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20682449..20683272 | 17..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:40 Download gff for
BS12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20682449..20683272 | 17..840 | 100 | | Plus |
BS12962.pep Sequence
Translation from 16 to 840
> BS12962.pep
MLDALIRAAELVDLVLLRPLASVIDAVITGVYYFLWGSYLVGFCLVEGSR
KGWNLLRCAVRNINEGIRDLGLITLDVADYFYGGTKGGLKNVLDFGHCIS
RFICNLLIDLGDGILWLLMLLPRAILFLWDCLLDFVVHSIVAHGLSLLNS
AFRASIGLALLLVLYMFRRYVYLMLIYLLQRGRIEISTKTQSVYLWTHHK
LQHFIHNVWYVSENAGSASPERCVVCMAQSRNVVVMPCRHLCLCKECSLQ
LVLLLEDRCPVCRHNITSFLSVYV*
BS12962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-PB | 274 | CG2617-PB | 1..274 | 1..274 | 1442 | 100 | Plus |
| CG2617-PA | 274 | CG2617-PA | 1..274 | 1..274 | 1442 | 100 | Plus |
