Clone BS12966 Report

Search the DGRC for BS12966

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG1888-RA
Protein status:BS12966.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12966.3prime Sequence

799 bp (691 high quality bases) assembled on 2006-10-13

> BS12966.3prime
ATGGTCTAGAAAGCTTTCAATCGGAGCGATCGGGACTGGAGATTTGGTCG
CCGGCGAAGTTCACACTAGCACTAGCATCGTGTCCTTGAACCGTGGGAAT
CGATCTTATCAGCTCGGAACGGCGTCGTTTGAGTTCCTGGCGCGACGAAC
TGAGCCTCTTGCTTCGCTTCATGTTGGTGAATCTCACGTAGATCTTACCC
CTTCGCTCGGTGCGGTAATAGCTGAGCTGTTCCTGCGGGAAAAGCTGCAG
TATCTCGCGTTCCAGCAAGTGACTCCTCTGCAGGGTCAGGTGCATCTGGT
TCTCCTCGTAGTAGCTGCACACTAGTTGGATGAGCAAAAGGCGCTGCACG
GCGTCCAGCGGATCGTTCTGGCCAATACGCTCCAGCAAGCTCTGGGCTTT
CATACCCGAGGATCGCAGAATGCCCAAAATGCTAACTTCTTGGTCAGGAG
TGGCAGTTGCATCCTCCTTGTTGCCTGAGGTTCCTCCTGAAGACCCAGCC
GCCAATACAGCTTCAGGCTTCCTAGTTTGCTGCATCGGCATCAGCTCCTG
TTTGACCATCATTATGTCGTCGGTTATCTGCGCAGGCGGATGGACCAAAG
GCAATGGAAAGGGAACTGACATTTCCCTGGGATCACTGAGGGCCACCAGC
GATTCTGCTGGTATTGTCTTGACCAGATCTTCAGGCTTGTGCAATTCTTC
CTGCTCTGACGGCTGTTCCATGTGCCACGGCGATTGCTCCTGACATTGCG
ATTGGCCCAGAATCTCCGGACAGCGACAGCCGGAACAGTGGCTCGACCC

BS12966.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PA 1119 CG1888-RA 337..1119 799..17 3865 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 2535 CG1888-RD 1569..2351 799..17 3885 99.7 Minus
CG1888-RC 4527 CG1888-RC 392..1174 799..17 3885 99.7 Minus
CG1888-RB 2400 CG1888-RB 1434..2216 799..17 3885 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545356..9546138 17..799 3885 99.7 Plus
Blast to na_te.dros performed 2015-02-10 16:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 401..450 328..377 115 70 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1826..1869 608..566 109 75 Minus

BS12966.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:33 Download gff for BS12966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-PA 337..1119 17..799 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:28 Download gff for BS12966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1434..2219 12..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:06 Download gff for BS12966.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1434..2219 12..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:06 Download gff for BS12966.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9545353..9546138 12..799 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:28 Download gff for BS12966.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5432858..5433643 12..799 99   Plus

BS12966.5prime Sequence

797 bp (794 high quality bases) assembled on 2006-10-13

> BS12966.5prime
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAAAACGATCCGCTGG

BS12966.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PA 1119 CG1888-RA 1..781 17..797 3880 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 2535 CG1888-RD 1227..2013 10..797 3900 99.7 Plus
CG1888-RC 4527 CG1888-RC 50..836 10..797 3900 99.7 Plus
CG1888-RB 2400 CG1888-RB 1092..1878 10..797 3900 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545694..9546298 797..193 3010 99.8 Minus
2R 25286936 2R 9546726..9546903 194..17 890 100 Minus
Blast to na_te.dros performed 2015-01-31 10:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1826..1869 544..586 109 75 Plus

BS12966.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:34 Download gff for BS12966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-PA 1..781 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:08 Download gff for BS12966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1086..1878 1..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:09 Download gff for BS12966.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1086..1878 1..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:09 Download gff for BS12966.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9545694..9546296 195..797 99 <- Minus
2R 9546726..9546915 1..194 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:08 Download gff for BS12966.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5433199..5433801 195..797 99 <- Minus
arm_2R 5434231..5434420 1..194 97   Minus

BS12966.complete Sequence

1151 bp assembled on 2006-11-01

GenBank Submission: FJ637343

> BS12966.complete
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAGAACGATCCGCTGGACG
CCGTGCAGCGCCTTTTGCTCATCCAACTAGTGTGCAGCTACTACGAGGAG
AACCAGATGCACCTGACCCTGCAGAGGAGTCACTTGCTGGAACGCGAGAT
ACTGCAGCTTTTCCCGCAGGAACAGCTCAGCTATTACCGCACCGAGCGAA
GGGGTAAGATCTACGTGAGATTCACCAACATGAAGCGAAGCAAGAGGCTC
AGTTCGTCGCGCCAGGAACTCAAACGACGCCGTTCCGAGCTGATAAGATC
GATTCCCACGGTTCAAGGACACGATGCTAGTGCTAGTGTGAACTTCGCCG
GCGACCAAATCTCCAGTCCCGATCGCTCCGATTGAAAGCTTTCTAGACCA
T

BS12966.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 1119 CG1888-PD 1..1119 17..1135 5595 100 Plus
CG1888-RC 1119 CG1888-PC 1..1119 17..1135 5595 100 Plus
CG1888-RB 1119 CG1888-PB 1..1119 17..1135 5595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-RD 2535 CG1888-RD 1233..2351 17..1135 5595 100 Plus
CG1888-RC 4527 CG1888-RC 56..1174 17..1135 5595 100 Plus
CG1888-RB 2400 CG1888-RB 1098..2216 17..1135 5595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9545356..9546298 1135..193 4715 100 Minus
2R 25286936 2R 9546726..9546903 194..17 890 100 Minus
Blast to na_te.dros performed 2014-11-27 01:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 401..450 824..775 115 70 Minus

BS12966.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:08 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 1..1119 17..1135 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:11 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 40..1173 1..1140 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:46 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1098..2215 17..1134 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:08 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RA 40..1173 1..1140 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:23 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
CG1888-RB 1098..2215 17..1134 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:23 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9545357..9546296 195..1134 100 <- Minus
2R 9546726..9546903 17..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:46 Download gff for BS12966.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5434231..5434408 17..194 100   Minus
arm_2R 5432862..5433801 195..1134 100 <- Minus

BS12966.pep Sequence

Translation from 16 to 1134

> BS12966.pep
MNPCTSSPPQMPRGSGSVENCNLESDGLQLLEMAGKEDYEELRDLLQSWD
VADLLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRR
WLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQEQSPLHMEQPSEQEELHK
PEDLVKTIPAESLVALSDPREMSVPFPLPLVHPPAQITDDIMMVKQELMP
MQQTRKPEAVLAAGSSGGTSGNKEDATATPDQEVSILGILRSSGMKAQSL
LERIGQNDPLDAVQRLLLIQLVCSYYEENQMHLTLQRSHLLEREILQLFP
QEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQELKRRRSELIRSIPTVQ
GHDASASVNFAGDQISSPDRSD*

BS12966.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1888-PD 372 CG1888-PD 1..372 1..372 1927 100 Plus
CG1888-PC 372 CG1888-PC 1..372 1..372 1927 100 Plus
CG1888-PB 372 CG1888-PB 1..372 1..372 1927 100 Plus
CG1888-PA 372 CG1888-PA 1..372 1..372 1927 100 Plus