Clone Sequence Records
BS12966.3prime Sequence
799 bp (691 high quality bases) assembled on 2006-10-13
> BS12966.3prime
ATGGTCTAGAAAGCTTTCAATCGGAGCGATCGGGACTGGAGATTTGGTCG
CCGGCGAAGTTCACACTAGCACTAGCATCGTGTCCTTGAACCGTGGGAAT
CGATCTTATCAGCTCGGAACGGCGTCGTTTGAGTTCCTGGCGCGACGAAC
TGAGCCTCTTGCTTCGCTTCATGTTGGTGAATCTCACGTAGATCTTACCC
CTTCGCTCGGTGCGGTAATAGCTGAGCTGTTCCTGCGGGAAAAGCTGCAG
TATCTCGCGTTCCAGCAAGTGACTCCTCTGCAGGGTCAGGTGCATCTGGT
TCTCCTCGTAGTAGCTGCACACTAGTTGGATGAGCAAAAGGCGCTGCACG
GCGTCCAGCGGATCGTTCTGGCCAATACGCTCCAGCAAGCTCTGGGCTTT
CATACCCGAGGATCGCAGAATGCCCAAAATGCTAACTTCTTGGTCAGGAG
TGGCAGTTGCATCCTCCTTGTTGCCTGAGGTTCCTCCTGAAGACCCAGCC
GCCAATACAGCTTCAGGCTTCCTAGTTTGCTGCATCGGCATCAGCTCCTG
TTTGACCATCATTATGTCGTCGGTTATCTGCGCAGGCGGATGGACCAAAG
GCAATGGAAAGGGAACTGACATTTCCCTGGGATCACTGAGGGCCACCAGC
GATTCTGCTGGTATTGTCTTGACCAGATCTTCAGGCTTGTGCAATTCTTC
CTGCTCTGACGGCTGTTCCATGTGCCACGGCGATTGCTCCTGACATTGCG
ATTGGCCCAGAATCTCCGGACAGCGACAGCCGGAACAGTGGCTCGACCC
BS12966.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-PA | 1119 | CG1888-RA | 337..1119 | 799..17 | 3865 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 2535 | CG1888-RD | 1569..2351 | 799..17 | 3885 | 99.7 | Minus |
CG1888-RC | 4527 | CG1888-RC | 392..1174 | 799..17 | 3885 | 99.7 | Minus |
CG1888-RB | 2400 | CG1888-RB | 1434..2216 | 799..17 | 3885 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9545356..9546138 | 17..799 | 3885 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-10 16:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 401..450 | 328..377 | 115 | 70 | Plus |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1826..1869 | 608..566 | 109 | 75 | Minus |
BS12966.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:33 Download gff for
BS12966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-PA | 337..1119 | 17..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:28 Download gff for
BS12966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1434..2219 | 12..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:06 Download gff for
BS12966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1434..2219 | 12..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:06 Download gff for
BS12966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9545353..9546138 | 12..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:28 Download gff for
BS12966.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5432858..5433643 | 12..799 | 99 | | Plus |
BS12966.5prime Sequence
797 bp (794 high quality bases) assembled on 2006-10-13
> BS12966.5prime
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAAAACGATCCGCTGG
BS12966.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-PA | 1119 | CG1888-RA | 1..781 | 17..797 | 3880 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 2535 | CG1888-RD | 1227..2013 | 10..797 | 3900 | 99.7 | Plus |
CG1888-RC | 4527 | CG1888-RC | 50..836 | 10..797 | 3900 | 99.7 | Plus |
CG1888-RB | 2400 | CG1888-RB | 1092..1878 | 10..797 | 3900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9545694..9546298 | 797..193 | 3010 | 99.8 | Minus |
2R | 25286936 | 2R | 9546726..9546903 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 1826..1869 | 544..586 | 109 | 75 | Plus |
BS12966.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:34 Download gff for
BS12966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-PA | 1..781 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:08 Download gff for
BS12966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1086..1878 | 1..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:09 Download gff for
BS12966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1086..1878 | 1..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:09 Download gff for
BS12966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9545694..9546296 | 195..797 | 99 | <- | Minus |
2R | 9546726..9546915 | 1..194 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:08 Download gff for
BS12966.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5433199..5433801 | 195..797 | 99 | <- | Minus |
arm_2R | 5434231..5434420 | 1..194 | 97 | | Minus |
BS12966.complete Sequence
1151 bp assembled on 2006-11-01
GenBank Submission: FJ637343
> BS12966.complete
GAAGTTATCAGTCGACATGAATCCGTGTACATCATCGCCCCCACAGATGC
CACGTGGCTCTGGATCCGTGGAAAACTGCAACCTGGAATCTGACGGCCTG
CAACTGCTCGAGATGGCTGGAAAGGAGGACTACGAGGAGCTGCGCGACCT
TCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTCACCTGCAAGATGAAG
CCATTAACGTGGACGAGCTGCAGATGATCAAACGTCATCATCTGTCCGAG
TTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCGCTTCGAGCATCACTT
GGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCCAAGGCGCCCAGGGCC
AGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCGGAGATTCTGGGCCAA
TCGCAATGTCAGGAGCAATCGCCGTTGCACATGGAACAGCCGTCAGAGCA
GGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGACAATACCAGCAGAAT
CGCTGGTGGCCCTCAGTGATCCCAGGGAAATGTCAGTTCCCTTTCCATTG
CCTTTGGTCCATCCGCCTGCGCAGATAACCGACGACATAATGATGGTCAA
ACAGGAGCTGATGCCGATGCAGCAAACTAGGAAGCCTGAAGCTGTATTGG
CGGCTGGGTCTTCAGGAGGAACCTCAGGCAACAAGGAGGATGCAACTGCC
ACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCTGCGATCCTCGGGTAT
GAAAGCCCAGAGCTTGCTGGAGCGTATTGGCCAGAACGATCCGCTGGACG
CCGTGCAGCGCCTTTTGCTCATCCAACTAGTGTGCAGCTACTACGAGGAG
AACCAGATGCACCTGACCCTGCAGAGGAGTCACTTGCTGGAACGCGAGAT
ACTGCAGCTTTTCCCGCAGGAACAGCTCAGCTATTACCGCACCGAGCGAA
GGGGTAAGATCTACGTGAGATTCACCAACATGAAGCGAAGCAAGAGGCTC
AGTTCGTCGCGCCAGGAACTCAAACGACGCCGTTCCGAGCTGATAAGATC
GATTCCCACGGTTCAAGGACACGATGCTAGTGCTAGTGTGAACTTCGCCG
GCGACCAAATCTCCAGTCCCGATCGCTCCGATTGAAAGCTTTCTAGACCA
T
BS12966.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 1119 | CG1888-PD | 1..1119 | 17..1135 | 5595 | 100 | Plus |
CG1888-RC | 1119 | CG1888-PC | 1..1119 | 17..1135 | 5595 | 100 | Plus |
CG1888-RB | 1119 | CG1888-PB | 1..1119 | 17..1135 | 5595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-RD | 2535 | CG1888-RD | 1233..2351 | 17..1135 | 5595 | 100 | Plus |
CG1888-RC | 4527 | CG1888-RC | 56..1174 | 17..1135 | 5595 | 100 | Plus |
CG1888-RB | 2400 | CG1888-RB | 1098..2216 | 17..1135 | 5595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9545356..9546298 | 1135..193 | 4715 | 100 | Minus |
2R | 25286936 | 2R | 9546726..9546903 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 401..450 | 824..775 | 115 | 70 | Minus |
BS12966.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:08 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RA | 1..1119 | 17..1135 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:11 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RA | 40..1173 | 1..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:46 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1098..2215 | 17..1134 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:08 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RA | 40..1173 | 1..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:23 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1888-RB | 1098..2215 | 17..1134 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:23 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9545357..9546296 | 195..1134 | 100 | <- | Minus |
2R | 9546726..9546903 | 17..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:46 Download gff for
BS12966.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5434231..5434408 | 17..194 | 100 | | Minus |
arm_2R | 5432862..5433801 | 195..1134 | 100 | <- | Minus |
BS12966.pep Sequence
Translation from 16 to 1134
> BS12966.pep
MNPCTSSPPQMPRGSGSVENCNLESDGLQLLEMAGKEDYEELRDLLQSWD
VADLLPHLQDEAINVDELQMIKRHHLSELLRNFRFGTRIRFEHHLERWRR
WLNVPLQGAQGQGSSHCSGCRCPEILGQSQCQEQSPLHMEQPSEQEELHK
PEDLVKTIPAESLVALSDPREMSVPFPLPLVHPPAQITDDIMMVKQELMP
MQQTRKPEAVLAAGSSGGTSGNKEDATATPDQEVSILGILRSSGMKAQSL
LERIGQNDPLDAVQRLLLIQLVCSYYEENQMHLTLQRSHLLEREILQLFP
QEQLSYYRTERRGKIYVRFTNMKRSKRLSSSRQELKRRRSELIRSIPTVQ
GHDASASVNFAGDQISSPDRSD*
BS12966.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1888-PD | 372 | CG1888-PD | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PC | 372 | CG1888-PC | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PB | 372 | CG1888-PB | 1..372 | 1..372 | 1927 | 100 | Plus |
CG1888-PA | 372 | CG1888-PA | 1..372 | 1..372 | 1927 | 100 | Plus |