Clone Sequence Records
BS12969.complete Sequence
884 bp assembled on 2010-02-09
GenBank Submission: KX802180
> BS12969.complete
GAAGTTATCAGTCGACATGCGTGGATTTATTATTTTTGCTGTCTTGGCTG
TGGCTCGCGCTGATGTAGGCGGCTATAACTATGGAGCTGGCATTGGATCA
GGCGGATCCATCTCGGGAGGCTCTCTGTCTGGAGGCTCCATCTCTGGAGG
CTCGATCTCAGGTGGCTCCATCTCAGGTGGCTCCATCTCAGGTGGCTCCA
TTTCTGGTGGTTCCCTTTCTAGTGGTTCCCTGTCCGGGGGATCTTATTCC
ACTAACTACGCTCCTGTAAACACCGAATTTAACAAGGAGTTCTTCACCTA
CTCCGCTCCCGAGGCCGATTTTGAGGATAATAAGAGTGTCAGTGATCTGG
CTGCTACTCTGAAGAAGAACCTCCGTGTGGTTTTCATCAGGGCCCCCGAG
AATAAGGGTCTGGAGAACGCCGCTCTGGCCTTGGCCAAGCAGGCTGCCGA
GCAGCAGACCGCCATCTATGTCCTGACCAAACAGGGTGATCTGTCCAGCC
TGGCCAACCAGCTGCAGAACCTGAACCATGTGAGCGCCAGCAAGCCGGAG
GTGCATTTCGTCAAGTACCGCACCCAGCAGGACGCCATCAATGCCCAGCG
TACCATTCAGCAGGAGTACGAGCGTCTGGGTGGAGCCAGCACCTCCTACA
ACGGAGGCGTGGCACCAGTCCTGGACTTTGCCACCAAAGTGCAGCAACAG
CAAGAGCAGCAGCAGCAACAGCAACAGCAGCAGGTGCAGCTGATTGATGA
GCGTCGGCCTTCCAGCGGAAGTGTAAGCGCCGAACTGGAGGCTCCTTCGG
CAGGATATATTCCACCACCAGCCGCAGCGCCTAGTGCCACGTACCTGCCT
GTGAACAAGGTCAAGTAGAAGCTTTCTAGACCAT
BS12969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 852 | CG5480-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
| TwdlK-RA | 744 | CG6460-PA | 343..582 | 371..610 | 360 | 76.7 | Plus |
| TwdlM-RA | 867 | CG5468-PA | 463..782 | 359..678 | 340 | 73.8 | Plus |
| Tb-RA | 852 | CG5480-PA | 91..168 | 137..214 | 210 | 84.6 | Plus |
| Tb-RA | 852 | CG5480-PA | 121..198 | 107..184 | 210 | 84.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 1031 | CG5480-RA | 90..941 | 17..868 | 4260 | 100 | Plus |
| TwdlK-RA | 840 | CG6460-RA | 360..599 | 371..610 | 360 | 76.7 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 512..831 | 359..678 | 340 | 73.8 | Plus |
| Tb-RA | 1031 | CG5480-RA | 180..257 | 137..214 | 210 | 84.6 | Plus |
| Tb-RA | 1031 | CG5480-RA | 210..287 | 107..184 | 210 | 84.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:32:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26656605..26657441 | 32..868 | 4185 | 100 | Plus |
| 3R | 32079331 | 3R | 26628126..26628365 | 610..371 | 360 | 76.7 | Minus |
| 3R | 32079331 | 3R | 26619706..26620025 | 359..678 | 340 | 73.8 | Plus |
| 3R | 32079331 | 3R | 26630307..26630425 | 371..489 | 325 | 84.9 | Plus |
| 3R | 32079331 | 3R | 26632459..26632570 | 374..485 | 305 | 84.8 | Plus |
| 3R | 32079331 | 3R | 26634173..26634491 | 360..678 | 305 | 73 | Plus |
| 3R | 32079331 | 3R | 26622847..26622954 | 490..383 | 300 | 85.2 | Minus |
| 3R | 32079331 | 3R | 26626320..26626433 | 484..371 | 285 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26624962..26625064 | 485..383 | 275 | 84.5 | Minus |
| 3R | 32079331 | 3R | 26640455..26640669 | 359..573 | 265 | 74.9 | Plus |
| 3R | 32079331 | 3R | 26656680..26656757 | 137..214 | 210 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26656710..26656787 | 107..184 | 210 | 84.6 | Plus |
Blast to na_te.dros performed 2014-11-28 04:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1566 | 680..740 | 197 | 80.3 | Plus |
BS12969.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:09 Download gff for
BS12969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 85..936 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:31 Download gff for
BS12969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 90..941 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:40 Download gff for
BS12969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 85..936 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:18 Download gff for
BS12969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 90..941 | 17..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:18 Download gff for
BS12969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26656605..26657441 | 32..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:31 Download gff for
BS12969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22482327..22483163 | 32..868 | 100 | | Plus |
BS12969.5prime Sequence
811 bp (736 high quality bases) assembled on 2006-10-13
> BS12969.5prime
GAAGTTATCAGTCGACATGCGTGGATTTATTATTTTTGCTGTCTTGGCTG
TGGCTCGCGCTGATGTAGGCGGCTATAACTATGGAGCTGGCATTGGATCA
GGCGGATCCATCTCGGGAGGCTCTCTGTCTGGAGGCTCCATCTCTGGAGG
CTCGATCTCAGGTGGCTCCATCTCAGGTGGCTCCATCTCAGGTGGCTCCA
TTTCTGGTGGTTCCCTTTCTAGTGGTTCCCTGTCCGGGGGATCTTATTCC
ACTAACTACGCTCCTGTAAACACCGAATTTAACAAGGAGTTCTTCACCTA
CTCCGCTCCCGAGGCCGATTTTGAGGATAATAAGAGTGTCAGTGATCTGG
CTGCTACTCTGAAGAAGAACCTCCGTGTGGTTTTCATCAGGGCCCCCGAG
AATAAGGGTCTGGAGAACGCCGCTCTGGCCTTGGCCAAGCAGGCTGCCGA
GCAGCAGACCGCCATCTATGTCCTGACCAAACAGGGTGATCTGTCCAGCC
TGGCCAACCAGCTGCAGAACCTGAACCATGTGAGCGCCAGCAAGCCGGAG
GTGCATTTCGTCAAGTACCGCACCCAGCAGGACGCCATCAATGCCCAGCG
TACCATTCAGCAGGAGTACGAGCGTCTGGGTGGAGCCAGCACCTCCTACA
ACGGAGGCGTGGCACCAGTCCTGGACTTTGCCACCAAAGTGCAGCAACAG
CAAGAGCAGCAGCAGCAACAGCAACAGCAGCAGGTGCAGCTGATTGATGA
GCGTCGGGCTTCCCGCGGAAGTGTAAGCGCCGAACTGGAGGCTCCTTCTG
CAGGATATATT
BS12969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5480-PA | 852 | CG5480-RA | 1..795 | 17..811 | 3900 | 99.6 | Plus |
| CG5468-PA | 867 | CG5468-RA | 514..580 | 410..476 | 210 | 92.5 | Plus |
| CG6460-PA | 744 | CG6460-RA | 379..448 | 407..476 | 200 | 91.4 | Plus |
| CG6478-PA | 861 | CG6478-RA | 499..568 | 407..476 | 200 | 91.4 | Plus |
| CG5471-PA | 924 | CG5471-RA | 487..556 | 407..476 | 200 | 91.4 | Plus |
| CG5476-PA | 930 | CG5476-RA | 562..631 | 407..476 | 200 | 91.4 | Plus |
| CG6452-PA | 690 | CG6452-RA | 304..366 | 410..472 | 190 | 92 | Plus |
| CG6447-PB | 840 | CG6447-RB | 508..550 | 434..476 | 165 | 95.3 | Plus |
| CG6447-PA | 858 | CG6447-RA | 526..568 | 434..476 | 165 | 95.3 | Plus |
| CG14250-PA | 738 | CG14250-RA | 486..520 | 541..575 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-RA | 1031 | CG5480-RA | 90..884 | 17..811 | 3930 | 99.6 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 512..831 | 359..678 | 365 | 75.6 | Plus |
| TwdlK-RA | 840 | CG6460-RA | 360..599 | 371..610 | 360 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26656605..26657384 | 32..811 | 3855 | 99.6 | Plus |
| 3R | 32079331 | 3R | 26628126..26628365 | 610..371 | 360 | 76.7 | Minus |
| 3R | 32079331 | 3R | 26619706..26620025 | 359..678 | 340 | 73.8 | Plus |
| 3R | 32079331 | 3R | 26630307..26630425 | 371..489 | 325 | 84.9 | Plus |
| 3R | 32079331 | 3R | 26632459..26632570 | 374..485 | 305 | 84.8 | Plus |
| 3R | 32079331 | 3R | 26634173..26634491 | 360..678 | 305 | 73 | Plus |
| 3R | 32079331 | 3R | 26622847..26622954 | 490..383 | 300 | 85.2 | Minus |
| 3R | 32079331 | 3R | 26626320..26626433 | 484..371 | 285 | 83.3 | Minus |
| 3R | 32079331 | 3R | 26624962..26625064 | 485..383 | 275 | 84.5 | Minus |
| 3R | 32079331 | 3R | 26640455..26640669 | 359..573 | 265 | 74.9 | Plus |
| 3R | 32079331 | 3R | 26656680..26656757 | 137..214 | 210 | 84.6 | Plus |
| 3R | 32079331 | 3R | 26656710..26656787 | 107..184 | 210 | 84.6 | Plus |
Blast to na_te.dros performed 2015-02-11 23:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1566 | 680..740 | 197 | 80.3 | Plus |
BS12969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:35 Download gff for
BS12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5480-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:34:01 Download gff for
BS12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 85..884 | 12..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for
BS12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tb-RA | 85..884 | 12..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for
BS12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26656605..26657384 | 32..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:34:01 Download gff for
BS12969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22482327..22483106 | 32..811 | 99 | | Plus |
BS12969.pep Sequence
Translation from 16 to 867
> BS12969.pep
MRGFIIFAVLAVARADVGGYNYGAGIGSGGSISGGSLSGGSISGGSISGG
SISGGSISGGSISGGSLSSGSLSGGSYSTNYAPVNTEFNKEFFTYSAPEA
DFEDNKSVSDLAATLKKNLRVVFIRAPENKGLENAALALAKQAAEQQTAI
YVLTKQGDLSSLANQLQNLNHVSASKPEVHFVKYRTQQDAINAQRTIQQE
YERLGGASTSYNGGVAPVLDFATKVQQQQEQQQQQQQQQVQLIDERRPSS
GSVSAELEAPSAGYIPPPAAAPSATYLPVNKVK*
BS12969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tb-PA | 283 | CG5480-PA | 1..283 | 1..283 | 1409 | 100 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 1..269 | 1..233 | 623 | 51.1 | Plus |
| TwdlB-PA | 286 | CG6478-PA | 1..269 | 1..233 | 616 | 50.7 | Plus |
| TwdlM-PA | 288 | CG5468-PA | 1..273 | 1..233 | 606 | 50 | Plus |
| TwdlL-PB | 279 | CG6447-PB | 3..263 | 9..233 | 600 | 51.1 | Plus |
