Clone Sequence Records
BS12972.3prime Sequence
715 bp (698 high quality bases) assembled on 2006-10-13
> BS12972.3prime
ATGGTCTAGAAAGCTTTTATGAGCTCTCGAACTTTTCCGGATCGATTCCG
GCCTTCTTCATTTCCACGGCAATGGAGAAGAGATAGTCATAGCATTCCGA
CATGGTTTTGGCCTTCTCCCAGTTCTGTCCCCAAACGTAGACGCCGTGTC
GTCGAACCAGGATCGCACTGCAGCCCGGATACTCCATCATGGCGGCGTAC
ATACTGTCGGCCAGGTCGCGTTCAAAGGGTGTGTTCTCGATGATCGGTAC
GACGAGCTCCTCGTCGTAGCGCAAATATCGCTTGTCCGCCTCATCGTAGA
CGCCCTTGATCATCTCCAAGTGGGTGCAGCGGAAGGTTTTCCCTGGCCAC
AGGAGCGTGGCCATTACGGCGTGCTGCGAATGGGTGTGGATGACGGCTCC
CGCCTGCCGATGCTGATAGGCCAGCATAAAGAGCGGCGTACATTGGCTCT
TCTTCAGGCCCTTGATCTCAGGCGGCAGTTGCAGATCCTTGCCGGTTATA
TCCTGCACGAAGAGATCCTCCGGCTGCATTCGCTCCTTCTGGACGCCCGA
CGGTGCTATGTAGATCTCATCGTTGTACTTAATGCTCATGCCACCTCCTG
TGCCGGTCACCCATCCCAAATGATAGAATTGCCTGCATAGCGAGGGAATC
AAGTGGCGAGGATGCTCCGCCGGCAAGTCTTTGAAGATCGAGAGGGCCAT
GTCGACTGATAACTT
BS12972.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-PA | 684 | CG11134-RA | 1..684 | 700..17 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..806 | 704..17 | 3425 | 99.9 | Minus |
CG11134-RA | 901 | CG11134-RA | 107..794 | 704..17 | 3425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 572..100 | 2365 | 100 | Minus |
X | 23542271 | X | 13738245..13738376 | 704..573 | 645 | 99.2 | Minus |
X | 23542271 | X | 13738980..13739070 | 107..17 | 440 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:04:20 has no hits.
BS12972.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:37 Download gff for
BS12972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-PA | 1..684 | 17..700 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:37 Download gff for
BS12972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 97..794 | 17..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:04 Download gff for
BS12972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 97..794 | 17..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:04 Download gff for
BS12972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738235..13738376 | 573..715 | 96 | -> | Minus |
X | 13738440..13738910 | 102..572 | 100 | -> | Minus |
X | 13738986..13739070 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:37 Download gff for
BS12972.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632268..13632409 | 573..715 | 96 | -> | Minus |
arm_X | 13632473..13632943 | 102..572 | 100 | -> | Minus |
arm_X | 13633019..13633103 | 17..101 | 100 | | Minus |
BS12972.5prime Sequence
714 bp (678 high quality bases) assembled on 2006-10-13
> BS12972.5prime
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCATAA
AAGCTTTCTAGACC
BS12972.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-PA | 684 | CG11134-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..806 | 13..700 | 3425 | 99.9 | Plus |
CG11134-RA | 901 | CG11134-RA | 107..794 | 13..700 | 3425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 145..617 | 2365 | 100 | Plus |
X | 23542271 | X | 13738245..13738376 | 13..144 | 645 | 99.2 | Plus |
X | 23542271 | X | 13738980..13739070 | 610..700 | 440 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:23:28 has no hits.
BS12972.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:37 Download gff for
BS12972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-PA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:47 Download gff for
BS12972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 100..794 | 5..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:13 Download gff for
BS12972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 100..794 | 5..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:13 Download gff for
BS12972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738238..13738376 | 5..144 | 97 | -> | Plus |
X | 13738440..13738910 | 145..615 | 100 | -> | Plus |
X | 13738986..13739070 | 616..700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:47 Download gff for
BS12972.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632271..13632409 | 5..144 | 97 | -> | Plus |
arm_X | 13632473..13632943 | 145..615 | 100 | -> | Plus |
arm_X | 13633019..13633103 | 616..700 | 100 | | Plus |
BS12972.complete Sequence
716 bp assembled on 2006-11-01
GenBank Submission: FJ637344
> BS12972.complete
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCATAA
AAGCTTTCTAGACCAT
BS12972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 684 | CG11134-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
CG11134-RA | 684 | CG11134-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-RB | 913 | CG11134-RB | 119..806 | 13..700 | 3425 | 99.9 | Plus |
CG11134-RA | 901 | CG11134-RA | 107..794 | 13..700 | 3425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13738440..13738912 | 145..617 | 2365 | 100 | Plus |
X | 23542271 | X | 13738245..13738376 | 13..144 | 645 | 99.2 | Plus |
X | 23542271 | X | 13738980..13739070 | 610..700 | 440 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:14:38 has no hits.
BS12972.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:09 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 1..684 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:13 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 96..790 | 5..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:31 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 111..792 | 17..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:09 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 96..790 | 5..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:51 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11134-RA | 111..792 | 17..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:51 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13738249..13738376 | 17..144 | 100 | -> | Plus |
X | 13738440..13738910 | 145..615 | 100 | -> | Plus |
X | 13738986..13739068 | 616..698 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:31 Download gff for
BS12972.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13632282..13632409 | 17..144 | 100 | -> | Plus |
arm_X | 13632473..13632943 | 145..615 | 100 | -> | Plus |
arm_X | 13633019..13633101 | 616..698 | 100 | | Plus |
BS12972.pep Sequence
Translation from 16 to 699
> BS12972.pep
MALSIFKDLPAEHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAP
SGVQKERMQPEDLFVQDITGKDLQLPPEIKGLKKSQCTPLFMLAYQHRQA
GAVIHTHSQHAVMATLLWPGKTFRCTHLEMIKGVYDEADKRYLRYDEELV
VPIIENTPFERDLADSMYAAMMEYPGCSAILVRRHGVYVWGQNWEKAKTM
SECYDYLFSIAVEMKKAGIDPEKFESS*
BS12972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11134-PB | 227 | CG11134-PB | 1..227 | 1..227 | 1221 | 100 | Plus |
CG11134-PA | 227 | CG11134-PA | 1..227 | 1..227 | 1221 | 100 | Plus |