Clone BS12972 Report

Search the DGRC for BS12972

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG11134-RA
Protein status:BS12972.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12972.3prime Sequence

715 bp (698 high quality bases) assembled on 2006-10-13

> BS12972.3prime
ATGGTCTAGAAAGCTTTTATGAGCTCTCGAACTTTTCCGGATCGATTCCG
GCCTTCTTCATTTCCACGGCAATGGAGAAGAGATAGTCATAGCATTCCGA
CATGGTTTTGGCCTTCTCCCAGTTCTGTCCCCAAACGTAGACGCCGTGTC
GTCGAACCAGGATCGCACTGCAGCCCGGATACTCCATCATGGCGGCGTAC
ATACTGTCGGCCAGGTCGCGTTCAAAGGGTGTGTTCTCGATGATCGGTAC
GACGAGCTCCTCGTCGTAGCGCAAATATCGCTTGTCCGCCTCATCGTAGA
CGCCCTTGATCATCTCCAAGTGGGTGCAGCGGAAGGTTTTCCCTGGCCAC
AGGAGCGTGGCCATTACGGCGTGCTGCGAATGGGTGTGGATGACGGCTCC
CGCCTGCCGATGCTGATAGGCCAGCATAAAGAGCGGCGTACATTGGCTCT
TCTTCAGGCCCTTGATCTCAGGCGGCAGTTGCAGATCCTTGCCGGTTATA
TCCTGCACGAAGAGATCCTCCGGCTGCATTCGCTCCTTCTGGACGCCCGA
CGGTGCTATGTAGATCTCATCGTTGTACTTAATGCTCATGCCACCTCCTG
TGCCGGTCACCCATCCCAAATGATAGAATTGCCTGCATAGCGAGGGAATC
AAGTGGCGAGGATGCTCCGCCGGCAAGTCTTTGAAGATCGAGAGGGCCAT
GTCGACTGATAACTT

BS12972.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-PA 684 CG11134-RA 1..684 700..17 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 913 CG11134-RB 119..806 704..17 3425 99.9 Minus
CG11134-RA 901 CG11134-RA 107..794 704..17 3425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13738440..13738912 572..100 2365 100 Minus
X 23542271 X 13738245..13738376 704..573 645 99.2 Minus
X 23542271 X 13738980..13739070 107..17 440 98.9 Minus
Blast to na_te.dros performed on 2015-01-30 18:04:20 has no hits.

BS12972.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:37 Download gff for BS12972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-PA 1..684 17..700 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:53:37 Download gff for BS12972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 97..794 17..715 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:08:04 Download gff for BS12972.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 97..794 17..715 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:08:04 Download gff for BS12972.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13738235..13738376 573..715 96 -> Minus
X 13738440..13738910 102..572 100 -> Minus
X 13738986..13739070 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:53:37 Download gff for BS12972.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13632268..13632409 573..715 96 -> Minus
arm_X 13632473..13632943 102..572 100 -> Minus
arm_X 13633019..13633103 17..101 100   Minus

BS12972.5prime Sequence

714 bp (678 high quality bases) assembled on 2006-10-13

> BS12972.5prime
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCATAA
AAGCTTTCTAGACC

BS12972.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-PA 684 CG11134-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 913 CG11134-RB 119..806 13..700 3425 99.9 Plus
CG11134-RA 901 CG11134-RA 107..794 13..700 3425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13738440..13738912 145..617 2365 100 Plus
X 23542271 X 13738245..13738376 13..144 645 99.2 Plus
X 23542271 X 13738980..13739070 610..700 440 98.9 Plus
Blast to na_te.dros performed on 2015-02-10 21:23:28 has no hits.

BS12972.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:37 Download gff for BS12972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-PA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:47 Download gff for BS12972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 100..794 5..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:13 Download gff for BS12972.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 100..794 5..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:13 Download gff for BS12972.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13738238..13738376 5..144 97 -> Plus
X 13738440..13738910 145..615 100 -> Plus
X 13738986..13739070 616..700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:47 Download gff for BS12972.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13632271..13632409 5..144 97 -> Plus
arm_X 13632473..13632943 145..615 100 -> Plus
arm_X 13633019..13633103 616..700 100   Plus

BS12972.complete Sequence

716 bp assembled on 2006-11-01

GenBank Submission: FJ637344

> BS12972.complete
GAAGTTATCAGTCGACATGGCCCTCTCGATCTTCAAAGACTTGCCGGCGG
AGCATCCTCGCCACTTGATTCCCTCGCTATGCAGGCAATTCTATCATTTG
GGATGGGTGACCGGCACAGGAGGTGGCATGAGCATTAAGTACAACGATGA
GATCTACATAGCACCGTCGGGCGTCCAGAAGGAGCGAATGCAGCCGGAGG
ATCTCTTCGTGCAGGATATAACCGGCAAGGATCTGCAACTGCCGCCTGAG
ATCAAGGGCCTGAAGAAGAGCCAATGTACGCCGCTCTTTATGCTGGCCTA
TCAGCATCGGCAGGCGGGAGCCGTCATCCACACCCATTCGCAGCACGCCG
TAATGGCCACGCTCCTGTGGCCAGGGAAAACCTTCCGCTGCACCCACTTG
GAGATGATCAAGGGCGTCTACGATGAGGCGGACAAGCGATATTTGCGCTA
CGACGAGGAGCTCGTCGTACCGATCATCGAGAACACACCCTTTGAACGCG
ACCTGGCCGACAGTATGTACGCCGCCATGATGGAGTATCCGGGCTGCAGT
GCGATCCTGGTTCGACGACACGGCGTCTACGTTTGGGGACAGAACTGGGA
GAAGGCCAAAACCATGTCGGAATGCTATGACTATCTCTTCTCCATTGCCG
TGGAAATGAAGAAGGCCGGAATCGATCCGGAAAAGTTCGAGAGCTCATAA
AAGCTTTCTAGACCAT

BS12972.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 684 CG11134-PB 1..684 17..700 3420 100 Plus
CG11134-RA 684 CG11134-PA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-RB 913 CG11134-RB 119..806 13..700 3425 99.9 Plus
CG11134-RA 901 CG11134-RA 107..794 13..700 3425 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13738440..13738912 145..617 2365 100 Plus
X 23542271 X 13738245..13738376 13..144 645 99.2 Plus
X 23542271 X 13738980..13739070 610..700 440 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 08:14:38 has no hits.

BS12972.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:09 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 1..684 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:13 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 96..790 5..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:31 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 111..792 17..698 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:09 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 96..790 5..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:51 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
CG11134-RA 111..792 17..698 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:51 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
X 13738249..13738376 17..144 100 -> Plus
X 13738440..13738910 145..615 100 -> Plus
X 13738986..13739068 616..698 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:31 Download gff for BS12972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13632282..13632409 17..144 100 -> Plus
arm_X 13632473..13632943 145..615 100 -> Plus
arm_X 13633019..13633101 616..698 100   Plus

BS12972.pep Sequence

Translation from 16 to 699

> BS12972.pep
MALSIFKDLPAEHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAP
SGVQKERMQPEDLFVQDITGKDLQLPPEIKGLKKSQCTPLFMLAYQHRQA
GAVIHTHSQHAVMATLLWPGKTFRCTHLEMIKGVYDEADKRYLRYDEELV
VPIIENTPFERDLADSMYAAMMEYPGCSAILVRRHGVYVWGQNWEKAKTM
SECYDYLFSIAVEMKKAGIDPEKFESS*

BS12972.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11134-PB 227 CG11134-PB 1..227 1..227 1221 100 Plus
CG11134-PA 227 CG11134-PA 1..227 1..227 1221 100 Plus