Clone BS12980 Report

Search the DGRC for BS12980

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG14820-RA
Protein status:BS12980.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12980.3prime Sequence

752 bp (693 high quality bases) assembled on 2006-10-13

> BS12980.3prime
ATGGTCTAGAAAGCTTCTACAATATATCGATTTCCCGTGCAGCGGCTATC
ATGCCCACGAATCCTTCGGTCACCTCGCGTGCCACTGGAATAATATCCTC
CGGAGGAAGGACAAAGCCCAATTCGCCCTTATCGCGCAGCTCTATGGTAT
AGTGTATCTTAATGTTCTTCACCGCATAGGCCCATTCCTTGCCCGAACCA
GATACTTCATATAATGTTGTAGCACTGGATCCATAGGTAAATACTGTGCC
ATATCTTCTATATAGAGCATCCGAGAAGCCCTTGGCTACGTGCATCATTT
GTGGATAGTGTTCGGGGAACTCTAGAGCTGTGTGTCCCCAAGGCGAAAGA
ACATACTGTCCATAGGAATGCAATGAGATATAAATCTTTATAGTGCCTTC
AGGTATGGAGTTGTTTATGTAGGCGGTTAGTTGACTGATCTCGGGATCTG
ATTCTGGTGAGGGACCAGCATATAATTGTGAACAGGGATCCGATTCGGCT
CCAGTCAACATCCACAGGTAATCAAAGTTCCTATTGAGATCAGTTCCAAT
GCACTCCCCCGTGGGATCTGAAGGCAGGCGGGACTTTCGCCAAAGACGTT
CCACTTCATGGGAATAAGCAAAGCCATCTGTATTTAGAACGGGAATGATA
TACCAGTCCACATTCTGAGCTATATCCCTGACTGCCGGGTTACGAGGCAC
CAGCAACTCATCGATGAAATAGGTGATCGTCGCTGACGTAATCCATTCGC
GG

BS12980.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 1251 CG14820-RA 516..1251 752..17 3680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1430 CG14820-RA 550..1285 752..17 3680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6934070..6934366 507..211 1485 100 Minus
3L 28110227 3L 6934486..6934679 210..17 970 100 Minus
3L 28110227 3L 6933533..6933684 752..601 760 100 Minus
3L 28110227 3L 6933882..6933976 602..508 475 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:21:45 has no hits.

BS12980.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:45 Download gff for BS12980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-PA 516..1251 17..752 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:10 Download gff for BS12980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 550..1288 10..752 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:03 Download gff for BS12980.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 550..1288 10..752 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:03 Download gff for BS12980.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6933533..6933683 602..752 100 -> Minus
3L 6933883..6933976 508..601 100 -> Minus
3L 6934070..6934366 211..507 100 -> Minus
3L 6934486..6934682 10..210 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:10 Download gff for BS12980.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6927586..6927782 10..210 98   Minus
arm_3L 6926633..6926783 602..752 100 -> Minus
arm_3L 6926983..6927076 508..601 100 -> Minus
arm_3L 6927170..6927466 211..507 100 -> Minus

BS12980.5prime Sequence

850 bp (699 high quality bases) assembled on 2006-10-13

> BS12980.5prime
GAAGTTATCAGTCGACATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCT
TTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATGATAACTACAAGGTA
TACAATGTGAGGATCGATGATCTGGAGCAGTTTAAGCTGCTTCACACGCA
GGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGCTCGTCACTTGGGTG
AATCCTCCGATATAATGCTGCCTCCTGAATATCAGAAGACATTTGAAAGC
CTCTTGACCAAACACAATTTCACCTATAACCTGAAGATCGATAATGTCCA
GACCCACATCGATGCCCAGAGACCCAAACAACGCATTACTTCCATGGAAT
GGACACAGTTTCACACTCTGGAAGAGATATACGCCTGGTTGGATGTGATC
GAGGATCGTTATCCGGATATAGTCACACCCTTTACCATCGGCAACTCATA
CGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATACAAAGAGGGAAATC
CCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCGAATGGATTACGTCA
GCGACGATCACCTATTTCATCGATGAGTTGCTGGTGCCTCGTAACCCGGC
AGTCAGGGATATAGCTCAGAATGTGGACTGGTATATCATTCCCGTTCTAA
ATACAGATGGCTTTGCTTATTCCCATGAAGTGGAACGTCTTTGGCGAAAG
TCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATTGGAACTGATCTCAA
TAGGAACTTTGATTACCTGTGGATGTTGACTGGAGCCGAATCGGATCCCT
GTTCACAATTATATGCTGGTCCCTCACCAGAATCAGATCCCGAGATCAGT

BS12980.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 1251 CG14820-RA 1..834 17..850 4145 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1430 CG14820-RA 35..868 17..850 4155 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6933166..6933684 165..683 2580 99.8 Plus
3L 28110227 3L 6932960..6933109 17..166 750 100 Plus
3L 28110227 3L 6933882..6933976 682..776 475 100 Plus
3L 28110227 3L 6934070..6934143 777..850 370 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:21:01 has no hits.

BS12980.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:46 Download gff for BS12980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:37:13 Download gff for BS12980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 26..868 6..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:46:11 Download gff for BS12980.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 26..868 6..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:46:11 Download gff for BS12980.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6932951..6933109 6..166 96 -> Plus
3L 6933168..6933683 167..682 99 -> Plus
3L 6933883..6933976 683..776 100 -> Plus
3L 6934070..6934143 777..850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:37:13 Download gff for BS12980.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6926051..6926209 6..166 96 -> Plus
arm_3L 6926268..6926783 167..682 99 -> Plus
arm_3L 6926983..6927076 683..776 100 -> Plus
arm_3L 6927170..6927243 777..850 100   Plus

BS12980.complete Sequence

1283 bp assembled on 2006-11-01

GenBank Submission: FJ637345

> BS12980.complete
GAAGTTATCAGTCGACATGTTGCTTAAGATTCTCCTAGTCGTAGGACTCT
TTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGATATGATAACTACAAGGTA
TACAATGTGAGGATCGATGATCTGGAGCAGTTTAAGCTGCTTCACACGCA
GGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTGAGGCTCGTCACTTGGGTG
AATCCTCCGATATAATGCTGCCTCCTGAATATCAGAAGACATTTGAAAGC
CTCTTGACCAAACACAATTTCACCTATAACCTGAAGATCGATAATGTCCA
GACCCACATCGATGCCCAGAGACCCAAACAACGCATTACTTCCATGGAAT
GGACACAGTTTCACACTCTGGAAGAGATATACGCCTGGTTGGATGTGATC
GAGGATCGTTATCCGGATATAGTCACACCCTTTACCATCGGCAACTCATA
CGAGGGCAGACCGATTAGAGGTGTTAAAATTTCATACAAAGAGGGAAATC
CCGCCGTTTTCATAGAGTCCAATATTCATGCCCGCGAATGGATTACGTCA
GCGACGATCACCTATTTCATCGATGAGTTGCTGGTGCCTCGTAACCCGGC
AGTCAGGGATATAGCTCAGAATGTGGACTGGTATATCATTCCCGTTCTAA
ATACAGATGGCTTTGCTTATTCCCATGAAGTGGAACGTCTTTGGCGAAAG
TCCCGCCTGCCTTCAGATCCCACGGGGGAGTGCATTGGAACTGATCTCAA
TAGGAACTTTGATTACCTGTGGATGTTGACTGGAGCCGAATCGGATCCCT
GTTCACAATTATATGCTGGTCCCTCACCAGAATCAGATCCCGAGATCAGT
CAACTAACCGCCTACATAAACAACTCCATACCTGAAGGCACTATAAAGAT
TTATATCTCATTGCATTCCTATGGACAGTATGTTCTTTCGCCTTGGGGAC
ACACAGCTCTAGAGTTCCCCGAACACTATCCACAAATGATGCACGTAGCC
AAGGGCTTCTCGGATGCTCTATATAGAAGATATGGCACAGTATTTACCTA
TGGATCCAGTGCTACAACATTATATGAAGTATCTGGTTCGGGCAAGGAAT
GGGCCTATGCGGTGAAGAACATTAAGATACACTATACCATAGAGCTGCGC
GATAAGGGCGAATTGGGCTTTGTCCTTCCTCCGGAGGATATTATTCCAGT
GGCACGCGAGGTGACCGAAGGATTCGTGGGCATGATAGCCGCTGCACGGG
AAATCGATATATTGTAGAAGCTTTCTAGACCAT

BS12980.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1251 CG14820-PA 1..1251 17..1267 6240 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-RA 1430 CG14820-RA 35..1285 17..1267 6240 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6933166..6933684 165..683 2580 99.8 Plus
3L 28110227 3L 6934070..6934366 777..1073 1485 100 Plus
3L 28110227 3L 6934486..6934679 1074..1267 970 100 Plus
3L 28110227 3L 6932960..6933109 17..166 750 100 Plus
3L 28110227 3L 6933882..6933976 682..776 475 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:05:24 has no hits.

BS12980.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:10 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 1..1251 17..1267 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:14 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 22..1284 6..1274 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:15:42 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 40..1285 22..1267 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:10 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 22..1284 6..1274 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:33 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
CG14820-RA 40..1285 22..1267 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:33 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6932965..6933109 22..166 100 -> Plus
3L 6933168..6933683 167..682 99 -> Plus
3L 6933883..6933976 683..776 100 -> Plus
3L 6934070..6934366 777..1073 100 -> Plus
3L 6934486..6934679 1074..1267 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:15:42 Download gff for BS12980.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6927586..6927779 1074..1267 100   Plus
arm_3L 6926983..6927076 683..776 100 -> Plus
arm_3L 6926065..6926209 22..166 100 -> Plus
arm_3L 6926268..6926783 167..682 99 -> Plus
arm_3L 6927170..6927466 777..1073 100 -> Plus

BS12980.pep Sequence

Translation from 16 to 1266

> BS12980.pep
MLLKILLVVGLFGLARSVEQVRYDNYKVYNVRIDDLEQFKLLHTQERSLK
LSSWREARHLGESSDIMLPPEYQKTFESLLTKHNFTYNLKIDNVQTHIDA
QRPKQRITSMEWTQFHTLEEIYAWLDVIEDRYPDIVTPFTIGNSYEGRPI
RGVKISYKEGNPAVFIESNIHAREWITSATITYFIDELLVPRNPAVRDIA
QNVDWYIIPVLNTDGFAYSHEVERLWRKSRLPSDPTGECIGTDLNRNFDY
LWMLTGAESDPCSQLYAGPSPESDPEISQLTAYINNSIPEGTIKIYISLH
SYGQYVLSPWGHTALEFPEHYPQMMHVAKGFSDALYRRYGTVFTYGSSAT
TLYEVSGSGKEWAYAVKNIKIHYTIELRDKGELGFVLPPEDIIPVAREVT
EGFVGMIAAAREIDIL*

BS12980.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14820-PA 416 CG14820-PA 1..416 1..416 2202 100 Plus
CG18585-PB 422 CG18585-PB 6..422 2..416 952 45.2 Plus
CG18585-PA 422 CG18585-PA 6..422 2..416 952 45.2 Plus
CG7025-PA 429 CG7025-PA 25..423 19..416 904 45.9 Plus
CG12374-PA 422 CG12374-PA 26..417 22..412 803 39.7 Plus