Clone BS12981 Report

Search the DGRC for BS12981

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptMal-A2-RA
Protein status:BS12981.pep: full length peptide match
Sequenced Size:1736

Clone Sequence Records

BS12981.3prime Sequence

757 bp (635 high quality bases) assembled on 2006-10-13

> BS12981.3prime
ATGGTCTAGAAAGCTTTTAAGCCAACCAGCGTAGAACGACTGCTTCGTAG
GGCATGAGAATGATTCTCTGTGACAGATCTGCTTTTTGCCCCGAATAGTG
TGTGGAGTAGGCAGTGGCCAGCACATACTCGTAGGTTTTGGGGGCGAGCC
CATCGAGGATTTCCATACCGTTGCCCATGTTGACCAGGATTCGATACTCC
TCGCTGATCTTGTTTGTGCGAATGATCTGTAGAACCTGTTCCGTCACCGC
CTCGTAGGAGAAACCTCCATCCTCTTTGAACGCAAGAAAGGCGGAACTGC
TCTTAAGTTCTTGAAGACCCTTAAAGATGTTCAGGGAAGATCTGGAAACA
CCGCGTTCAGTCTGCACATTGTACCGTTGATATTCGGGACTTAGAGGCAG
CCAGGTGGACTCCCCATCAGAGAAGTCGGCATTCTTTCCAGCCGTCCACT
GCATGGGCGTGCGCTCCCCATCGCGATCCTCGCAAGAGTCGCCGGTGCAC
TCCACGTCCACGTTGGACATGCCAATTTCCTCGCCGTAGTAGGTTACCGA
AGCACCTGGCAGGGCGTTTACAATCACATTTAGTAGATCCACTTTGTGAG
CTCCCATACGATCGGCCACTCGGTTGGTATCGTGATTACCAACAACCCAA
TTGGCCGTCTGGTGCTCCTTCCACATGGTATTCATCCAGTAGTCGATAGA
TCCCACAACATCCTTGGCGGTGGAGTATCCACTGAGATACTTCAACTGGA
AGTTCAT

BS12981.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8694-PA 1704 LvpD-RA 964..1704 757..17 3680 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 2036 CG8694-RA 986..1726 757..17 3690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8454612..8455150 757..219 2680 99.8 Minus
2R 25286936 2R 8455211..8455341 219..89 655 100 Minus
2R 25286936 2R 8455399..8455472 90..17 370 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:59:05 has no hits.

BS12981.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:46 Download gff for BS12981.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8694-PA 964..1704 17..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:34:07 Download gff for BS12981.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 986..1731 8..757 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:00 Download gff for BS12981.3prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 986..1731 8..757 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:00 Download gff for BS12981.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8455212..8455340 90..218 100 -> Minus
2R 8455400..8455477 8..89 95   Minus
2R 8454612..8455150 219..757 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:34:07 Download gff for BS12981.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4342117..4342655 219..757 99 -> Minus
arm_2R 4342717..4342845 90..218 100 -> Minus
arm_2R 4342905..4342982 8..89 95   Minus

BS12981.5prime Sequence

813 bp (737 high quality bases) assembled on 2006-10-13

> BS12981.5prime
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACG
GGTTAGCGGGTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACA
TCTACACCAAGGA

BS12981.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8694-PA 1704 LvpD-RA 1..797 17..813 3935 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 2036 CG8694-RA 18..819 12..813 3965 99.6 Plus
Mal-A6-RC 1892 CG30360-RC 163..515 119..471 460 75.4 Plus
Mal-A6-RD 2291 CG30360-RD 163..515 119..471 460 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8453644..8454445 12..813 3965 99.6 Plus
2R 25286936 2R 8465320..8465672 119..471 460 75.4 Plus
2R 25286936 2R 8471170..8471538 463..95 360 73.2 Minus
2R 25286936 2R 8463133..8463335 197..399 250 74.9 Plus
2R 25286936 2R 8472103..8472452 119..468 235 71.1 Plus
2L 23513712 2L 11850478..11850615 119..256 195 76.1 Plus
Blast to na_te.dros performed on 2015-02-11 18:57:01 has no hits.

BS12981.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:47 Download gff for BS12981.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8694-PA 1..796 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:25 Download gff for BS12981.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 18..818 12..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:22 Download gff for BS12981.5prime
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 18..818 12..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:22 Download gff for BS12981.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8453644..8454444 12..812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:25 Download gff for BS12981.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4341149..4341949 12..812 99   Plus

BS12981.complete Sequence

1736 bp assembled on 2010-05-13

GenBank Submission: KX801220

> BS12981.complete
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACC
GGTTAGCGGTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACA
TCTACACCAAGGACCAGCCGGCCACGGTGGATCTCATGTACGAATGGCGT
GAGTTTTTGGACAACTATCGGGCGCAGAATGGAGGCGATTCACGGGTTCT
CCTGGCCGAGGCCTATTCTTCCGTGGAGACACTAAGTGCTTACTTCGGAA
ACAGCACCCATCAGGGTACCCAGCTGCCCATGAACTTCCAGTTGATGTAT
CTCAGTGGATACTCCACCGCCAAGGATGTTGTGGGATCTATCGACTACTG
GATGAATACCATGTGGAAGGAGCACCAGACGGCCAATTGGGTTGTTGGTA
ATCACGATACCAACCGAGTGGCCGATCGTATGGGAGCTCACAAAGTGGAT
CTACTAAATGTGATTGTAAACGCCCTGCCAGGTGCTTCGGTAACCTACTA
CGGCGAGGAAATTGGCATGTCCAACGTGGACGTGGAGTGCACCGGCGACT
CTTGCGAGGATCGCGATGGGGAGCGCACGCCCATGCAGTGGACGGCTGGA
AAGAATGCCGACTTCTCTGATGGGGAGTCCACCTGGCTGCCTCTAAGTCC
CGAATATCAACGGTACAATGTGCAGACTGAACGCGGTGTTTCCAGATCTT
CCCTGAACATCTTTAAGGGTCTTCAAGAACTTAAGAGCAGTTCCGCCTTT
CTTGCGTTCAAAGAGGATGGAGGTTTCTCCTACGAGGCGGTGACGGAACA
GGTTCTACAGATCATTCGCACAAACAAGATCAGCGAGGAGTATCGAATCC
TGGTCAACATGGGCAACGGTATGGAAATCCTCGATGGGCTCGCCCCCAAA
ACCTACGAGTATGTGCTGGCCACTGCCTACTCCACACACTATTCGGGGCA
AAAAGCAGATCTGTCACAGAGAATCATTCTCATGCCCTACGAAGCAGTCG
TTCTACGCTGGTTGGCTTAAAAGCTTTCTAGACCAT

BS12981.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 1704 CG8694-PA 1..1704 17..1720 8520 100 Plus
Mal-A6-RC 1806 CG30360-PC 151..503 119..471 460 75.4 Plus
Mal-A6-RD 1806 CG30360-PD 151..503 119..471 460 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-RA 2036 CG8694-RA 18..1726 12..1720 8530 99.9 Plus
Mal-A6-RC 1892 CG30360-RC 163..515 119..471 460 75.4 Plus
Mal-A6-RD 2291 CG30360-RD 163..515 119..471 460 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8453644..8455150 12..1518 7520 99.9 Plus
2R 25286936 2R 8455211..8455341 1518..1648 655 100 Plus
2R 25286936 2R 8465320..8465672 119..471 460 75.4 Plus
2R 25286936 2R 8455399..8455472 1647..1720 370 100 Plus
2R 25286936 2R 8471170..8471538 463..95 360 73.2 Minus
2R 25286936 2R 8463133..8463335 197..399 250 74.9 Plus
2R 25286936 2R 8472103..8472452 119..468 235 71.1 Plus
2L 23513712 2L 11850478..11850615 119..256 195 76.1 Plus
Blast to na_te.dros performed on 2014-11-28 02:16:54 has no hits.

BS12981.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:12 Download gff for BS12981.complete
Subject Subject Range Query Range Percent Splice Strand
LvpD-RA 18..1719 17..1718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:29 Download gff for BS12981.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 23..1724 17..1718 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:47 Download gff for BS12981.complete
Subject Subject Range Query Range Percent Splice Strand
Mal-A2-RA 23..1724 17..1718 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:47 Download gff for BS12981.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8455212..8455340 1519..1647 100 -> Plus
2R 8455400..8455470 1648..1718 100   Plus
2R 8453649..8455150 17..1518 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:29 Download gff for BS12981.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4341154..4342655 17..1518 100 -> Plus
arm_2R 4342717..4342845 1519..1647 100 -> Plus
arm_2R 4342905..4342975 1648..1718 100   Plus

BS12981.pep Sequence

Translation from 16 to 1719

> BS12981.pep
MPKWAHLGLAALLLISTTQEGTADIDWWENASLYQIYPRSFQDSDGDGIG
DLKGITSRLGYLKEIGITATWLSPIFTSPMSDFGYDISNFYDIDPIFGTL
EDFDDLIVEAKSLGVKIILDFVPNHSSDENVWFEKSVNREDGYDDFYVWD
DGKLNEETGARDPPSNWVSVFSGPMWTWNEKRQQYFLHQFQVKQPDLNFT
NPMVREHMLDVLKFWLDRGVDGFRIDAVPHIYEHRNADGSYPDEPVSGWG
SDPNAYDYHDHIYTKDQPATVDLMYEWREFLDNYRAQNGGDSRVLLAEAY
SSVETLSAYFGNSTHQGTQLPMNFQLMYLSGYSTAKDVVGSIDYWMNTMW
KEHQTANWVVGNHDTNRVADRMGAHKVDLLNVIVNALPGASVTYYGEEIG
MSNVDVECTGDSCEDRDGERTPMQWTAGKNADFSDGESTWLPLSPEYQRY
NVQTERGVSRSSLNIFKGLQELKSSSAFLAFKEDGGFSYEAVTEQVLQII
RTNKISEEYRILVNMGNGMEILDGLAPKTYEYVLATAYSTHYSGQKADLS
QRIILMPYEAVVLRWLA*

BS12981.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mal-A2-PA 567 CG8694-PA 1..567 1..567 3055 100 Plus
Mal-A4-PA 579 CG8693-PA 24..574 27..564 1412 49.6 Plus
Mal-A3-PA 574 CG8695-PA 10..571 14..563 1367 49 Plus
Mal-A5-PA 630 CG30359-PA 40..594 23..564 1367 48.6 Plus
Mal-A6-PC 601 CG30360-PC 20..598 7..563 1360 46.8 Plus