Clone Sequence Records
BS12981.3prime Sequence
757 bp (635 high quality bases) assembled on 2006-10-13
> BS12981.3prime
ATGGTCTAGAAAGCTTTTAAGCCAACCAGCGTAGAACGACTGCTTCGTAG
GGCATGAGAATGATTCTCTGTGACAGATCTGCTTTTTGCCCCGAATAGTG
TGTGGAGTAGGCAGTGGCCAGCACATACTCGTAGGTTTTGGGGGCGAGCC
CATCGAGGATTTCCATACCGTTGCCCATGTTGACCAGGATTCGATACTCC
TCGCTGATCTTGTTTGTGCGAATGATCTGTAGAACCTGTTCCGTCACCGC
CTCGTAGGAGAAACCTCCATCCTCTTTGAACGCAAGAAAGGCGGAACTGC
TCTTAAGTTCTTGAAGACCCTTAAAGATGTTCAGGGAAGATCTGGAAACA
CCGCGTTCAGTCTGCACATTGTACCGTTGATATTCGGGACTTAGAGGCAG
CCAGGTGGACTCCCCATCAGAGAAGTCGGCATTCTTTCCAGCCGTCCACT
GCATGGGCGTGCGCTCCCCATCGCGATCCTCGCAAGAGTCGCCGGTGCAC
TCCACGTCCACGTTGGACATGCCAATTTCCTCGCCGTAGTAGGTTACCGA
AGCACCTGGCAGGGCGTTTACAATCACATTTAGTAGATCCACTTTGTGAG
CTCCCATACGATCGGCCACTCGGTTGGTATCGTGATTACCAACAACCCAA
TTGGCCGTCTGGTGCTCCTTCCACATGGTATTCATCCAGTAGTCGATAGA
TCCCACAACATCCTTGGCGGTGGAGTATCCACTGAGATACTTCAACTGGA
AGTTCAT
BS12981.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8694-PA | 1704 | LvpD-RA | 964..1704 | 757..17 | 3680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 986..1726 | 757..17 | 3690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8454612..8455150 | 757..219 | 2680 | 99.8 | Minus |
2R | 25286936 | 2R | 8455211..8455341 | 219..89 | 655 | 100 | Minus |
2R | 25286936 | 2R | 8455399..8455472 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:59:05 has no hits.
BS12981.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:46 Download gff for
BS12981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8694-PA | 964..1704 | 17..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:34:07 Download gff for
BS12981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 986..1731 | 8..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:00 Download gff for
BS12981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 986..1731 | 8..757 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:00 Download gff for
BS12981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8455212..8455340 | 90..218 | 100 | -> | Minus |
2R | 8455400..8455477 | 8..89 | 95 | | Minus |
2R | 8454612..8455150 | 219..757 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:34:07 Download gff for
BS12981.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4342117..4342655 | 219..757 | 99 | -> | Minus |
arm_2R | 4342717..4342845 | 90..218 | 100 | -> | Minus |
arm_2R | 4342905..4342982 | 8..89 | 95 | | Minus |
BS12981.5prime Sequence
813 bp (737 high quality bases) assembled on 2006-10-13
> BS12981.5prime
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACG
GGTTAGCGGGTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACA
TCTACACCAAGGA
BS12981.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:13:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8694-PA | 1704 | LvpD-RA | 1..797 | 17..813 | 3935 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 18..819 | 12..813 | 3965 | 99.6 | Plus |
Mal-A6-RC | 1892 | CG30360-RC | 163..515 | 119..471 | 460 | 75.4 | Plus |
Mal-A6-RD | 2291 | CG30360-RD | 163..515 | 119..471 | 460 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8453644..8454445 | 12..813 | 3965 | 99.6 | Plus |
2R | 25286936 | 2R | 8465320..8465672 | 119..471 | 460 | 75.4 | Plus |
2R | 25286936 | 2R | 8471170..8471538 | 463..95 | 360 | 73.2 | Minus |
2R | 25286936 | 2R | 8463133..8463335 | 197..399 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8472103..8472452 | 119..468 | 235 | 71.1 | Plus |
2L | 23513712 | 2L | 11850478..11850615 | 119..256 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:57:01 has no hits.
BS12981.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:47 Download gff for
BS12981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8694-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:25 Download gff for
BS12981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 18..818 | 12..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:22 Download gff for
BS12981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 18..818 | 12..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:22 Download gff for
BS12981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8453644..8454444 | 12..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:25 Download gff for
BS12981.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4341149..4341949 | 12..812 | 99 | | Plus |
BS12981.complete Sequence
1736 bp assembled on 2010-05-13
GenBank Submission: KX801220
> BS12981.complete
GAAGTTATCAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTC
TCCTTCTAATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGG
GAGAACGCCTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGA
TGGCGATGGCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACC
TCAAGGAAATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCG
CCCATGTCGGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCC
GATTTTCGGCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGT
CGCTGGGCGTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGAC
GAGAACGTGTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGA
CTTCTACGTGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAG
ATCCTCCATCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGG
AACGAGAAGCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCC
GGATCTAAACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCT
TGAAGTTTTGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTT
CCACACATCTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGAACC
GGTTAGCGGTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACA
TCTACACCAAGGACCAGCCGGCCACGGTGGATCTCATGTACGAATGGCGT
GAGTTTTTGGACAACTATCGGGCGCAGAATGGAGGCGATTCACGGGTTCT
CCTGGCCGAGGCCTATTCTTCCGTGGAGACACTAAGTGCTTACTTCGGAA
ACAGCACCCATCAGGGTACCCAGCTGCCCATGAACTTCCAGTTGATGTAT
CTCAGTGGATACTCCACCGCCAAGGATGTTGTGGGATCTATCGACTACTG
GATGAATACCATGTGGAAGGAGCACCAGACGGCCAATTGGGTTGTTGGTA
ATCACGATACCAACCGAGTGGCCGATCGTATGGGAGCTCACAAAGTGGAT
CTACTAAATGTGATTGTAAACGCCCTGCCAGGTGCTTCGGTAACCTACTA
CGGCGAGGAAATTGGCATGTCCAACGTGGACGTGGAGTGCACCGGCGACT
CTTGCGAGGATCGCGATGGGGAGCGCACGCCCATGCAGTGGACGGCTGGA
AAGAATGCCGACTTCTCTGATGGGGAGTCCACCTGGCTGCCTCTAAGTCC
CGAATATCAACGGTACAATGTGCAGACTGAACGCGGTGTTTCCAGATCTT
CCCTGAACATCTTTAAGGGTCTTCAAGAACTTAAGAGCAGTTCCGCCTTT
CTTGCGTTCAAAGAGGATGGAGGTTTCTCCTACGAGGCGGTGACGGAACA
GGTTCTACAGATCATTCGCACAAACAAGATCAGCGAGGAGTATCGAATCC
TGGTCAACATGGGCAACGGTATGGAAATCCTCGATGGGCTCGCCCCCAAA
ACCTACGAGTATGTGCTGGCCACTGCCTACTCCACACACTATTCGGGGCA
AAAAGCAGATCTGTCACAGAGAATCATTCTCATGCCCTACGAAGCAGTCG
TTCTACGCTGGTTGGCTTAAAAGCTTTCTAGACCAT
BS12981.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 1704 | CG8694-PA | 1..1704 | 17..1720 | 8520 | 100 | Plus |
Mal-A6-RC | 1806 | CG30360-PC | 151..503 | 119..471 | 460 | 75.4 | Plus |
Mal-A6-RD | 1806 | CG30360-PD | 151..503 | 119..471 | 460 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-RA | 2036 | CG8694-RA | 18..1726 | 12..1720 | 8530 | 99.9 | Plus |
Mal-A6-RC | 1892 | CG30360-RC | 163..515 | 119..471 | 460 | 75.4 | Plus |
Mal-A6-RD | 2291 | CG30360-RD | 163..515 | 119..471 | 460 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8453644..8455150 | 12..1518 | 7520 | 99.9 | Plus |
2R | 25286936 | 2R | 8455211..8455341 | 1518..1648 | 655 | 100 | Plus |
2R | 25286936 | 2R | 8465320..8465672 | 119..471 | 460 | 75.4 | Plus |
2R | 25286936 | 2R | 8455399..8455472 | 1647..1720 | 370 | 100 | Plus |
2R | 25286936 | 2R | 8471170..8471538 | 463..95 | 360 | 73.2 | Minus |
2R | 25286936 | 2R | 8463133..8463335 | 197..399 | 250 | 74.9 | Plus |
2R | 25286936 | 2R | 8472103..8472452 | 119..468 | 235 | 71.1 | Plus |
2L | 23513712 | 2L | 11850478..11850615 | 119..256 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:54 has no hits.
BS12981.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 14:01:12 Download gff for
BS12981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LvpD-RA | 18..1719 | 17..1718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:29 Download gff for
BS12981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 23..1724 | 17..1718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:47 Download gff for
BS12981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mal-A2-RA | 23..1724 | 17..1718 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:47 Download gff for
BS12981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8455212..8455340 | 1519..1647 | 100 | -> | Plus |
2R | 8455400..8455470 | 1648..1718 | 100 | | Plus |
2R | 8453649..8455150 | 17..1518 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:29 Download gff for
BS12981.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4341154..4342655 | 17..1518 | 100 | -> | Plus |
arm_2R | 4342717..4342845 | 1519..1647 | 100 | -> | Plus |
arm_2R | 4342905..4342975 | 1648..1718 | 100 | | Plus |
BS12981.pep Sequence
Translation from 16 to 1719
> BS12981.pep
MPKWAHLGLAALLLISTTQEGTADIDWWENASLYQIYPRSFQDSDGDGIG
DLKGITSRLGYLKEIGITATWLSPIFTSPMSDFGYDISNFYDIDPIFGTL
EDFDDLIVEAKSLGVKIILDFVPNHSSDENVWFEKSVNREDGYDDFYVWD
DGKLNEETGARDPPSNWVSVFSGPMWTWNEKRQQYFLHQFQVKQPDLNFT
NPMVREHMLDVLKFWLDRGVDGFRIDAVPHIYEHRNADGSYPDEPVSGWG
SDPNAYDYHDHIYTKDQPATVDLMYEWREFLDNYRAQNGGDSRVLLAEAY
SSVETLSAYFGNSTHQGTQLPMNFQLMYLSGYSTAKDVVGSIDYWMNTMW
KEHQTANWVVGNHDTNRVADRMGAHKVDLLNVIVNALPGASVTYYGEEIG
MSNVDVECTGDSCEDRDGERTPMQWTAGKNADFSDGESTWLPLSPEYQRY
NVQTERGVSRSSLNIFKGLQELKSSSAFLAFKEDGGFSYEAVTEQVLQII
RTNKISEEYRILVNMGNGMEILDGLAPKTYEYVLATAYSTHYSGQKADLS
QRIILMPYEAVVLRWLA*
BS12981.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mal-A2-PA | 567 | CG8694-PA | 1..567 | 1..567 | 3055 | 100 | Plus |
Mal-A4-PA | 579 | CG8693-PA | 24..574 | 27..564 | 1412 | 49.6 | Plus |
Mal-A3-PA | 574 | CG8695-PA | 10..571 | 14..563 | 1367 | 49 | Plus |
Mal-A5-PA | 630 | CG30359-PA | 40..594 | 23..564 | 1367 | 48.6 | Plus |
Mal-A6-PC | 601 | CG30360-PC | 20..598 | 7..563 | 1360 | 46.8 | Plus |