Clone Sequence Records
BS12984.3prime Sequence
709 bp (707 high quality bases) assembled on 2006-10-13
> BS12984.3prime
ATGGTCTAGAAAGCTTTCAGACATATATAGACGAGGGCAGGGCCAATCCC
ACCTCGAAGTAATTGCGCTCGTCGACCTTGTAGCGCTTAATGGGGGACTC
CTTGGCGACGATCTCCTTGCGGGTCCTCTTCAGGGCCTTGACTGGAGTCT
CCAGGCAGAAGGTGTTGTCGCAGGGGGCAGACTTGGGGGCCACTGGAGTG
GCCAGTTGGACAAGCAAGTTGTGAGGAATCTTGGCCAGGGGCGATGCCGG
TTCCGGAGTGGGCATCAGGTTGTGCATGGGCAGGGGAACCAGGCCAAAGC
TCAGATCCGAGGCCGGATCGTCTCCAGGTGCGTAGGATGGCGACAGCACC
TCCTGGGGGCAGTTCGACTCCATTTGCTGCTTGACCAAGGTGCGTCTGCG
CAGATTGAAGGTGGACCTTCTCGGCTTCTTCTTGCTGCTGGCGTTCGCCT
TGCAGGCGGAATCCAAGATGGCATCGATTAGGCGATCCAAGGTCTGATCA
CCCATCTGCGTGGAGGCGGGCTGCGGTGTGCTTGGACGCACTTCCACCTT
GGGGGTGGGTGGCTCTGGCACTGCCGTCTCCTGCAACTCCGGCTCCAAGG
TGGCCACAAAGTCCTCGTCCAGTCTACGCTGCTTGAGTTTGTTAACTCCT
GCACCCGAGCCTACAATATAGCGCGGCTGGCCCAGAAAGGGATCCAACGG
AGCCAGGCC
BS12984.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-PA | 1062 | CG12496-RA | 370..1062 | 709..17 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 475..1167 | 709..17 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2409735..2410427 | 17..709 | 3465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:21:32 has no hits.
BS12984.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:47 Download gff for
BS12984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-PA | 370..1062 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:01 Download gff for
BS12984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 475..1169 | 13..709 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:05 Download gff for
BS12984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 475..1169 | 13..709 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:05 Download gff for
BS12984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2409733..2410427 | 13..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:01 Download gff for
BS12984.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2303766..2304460 | 13..709 | 99 | | Plus |
BS12984.5prime Sequence
771 bp (740 high quality bases) assembled on 2006-10-13
> BS12984.5prime
GAAGTTATCAGTCGACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGA
ACGAGATTCCCGTGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGG
CTGCAGAGGAGGCAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGA
GAACGTGCCTGACACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCC
GGCTGCGCAACAGTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAAT
GTCACCCCGGAGGCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAG
TGTGCGATACGCCACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCA
ACGGACTGCCCAGTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTG
GATCCCTTTCTGGGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGT
TAACAAACTCAAGCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGG
AGCCGGAGTTGCAGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTG
GAAGTGCGTCCAAGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCA
GACCTTGGATCGCCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGA
ACGCCAGCAGCAAGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGA
CGCACCTTGGTCAAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCT
GTCGCCATCCTACGCACCTGG
BS12984.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-PA | 1062 | CG12496-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 104..860 | 15..771 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2410042..2410798 | 771..15 | 3785 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:13:53 has no hits.
BS12984.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:48 Download gff for
BS12984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-PA | 1..755 | 17..771 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:04:17 Download gff for
BS12984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 98..860 | 9..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:28:57 Download gff for
BS12984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 98..860 | 9..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:28:57 Download gff for
BS12984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2410042..2410802 | 9..771 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:04:17 Download gff for
BS12984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2304075..2304835 | 9..771 | 99 | | Minus |
BS12984.complete Sequence
1094 bp assembled on 2006-11-01
GenBank Submission: FJ637346
> BS12984.complete
GAAGTTATCAGTCGACATGCTGAAGTGGACGGCATCGGCGCAGCGCCTGA
ACGAGATTCCCGTGCACGATCAGGATGCCAACCAGCCGCAGAGGAGGAGG
CTGCAGAGGAGGCAGCGCCGTCAGCGGAGGGCCACCATTGCCAACAAGGA
GAACGTGCCTGACACCGTGGGCTACACCTCCACGCCAGTGCCCATTACCC
GGCTGCGCAACAGTCCCCTGGTCCTGGCGCCGCTGAGCGATATCCGGAAT
GTCACCCCGGAGGCGGTGGTGCGCAGTCAGGCGCCCCAAAGGGTACAGAG
TGTGCGATACGCCACCACATTGCCACGTTTTGCCGAGGACTACTCGCCCA
ACGGACTGCCCAGTGGTCAGCACTTGGCGCTGAGGGGCCTGGCTCCGTTG
GATCCCTTTCTGGGCCAGCCGCGCTATATTGTAGGCTCGGGTGCAGGAGT
TAACAAACTCAAGCAGCGTAGACTGGACGAGGACTTTGTGGCCACCTTGG
AGCCGGAGTTGCAGGAGACGGCAGTGCCAGAGCCACCCACCCCCAAGGTG
GAAGTGCGTCCAAGCACACCGCAGCCCGCCTCCACGCAGATGGGTGATCA
GACCTTGGATCGCCTAATCGATGCCATCTTGGATTCCGCCTGCAAGGCGA
ACGCCAGCAGCAAGAAGAAGCCGAGAAGGTCCACCTTCAATCTGCGCAGA
CGCACCTTGGTCAAGCAGCAAATGGAGTCGAACTGCCCCCAGGAGGTGCT
GTCGCCATCCTACGCACCTGGAGACGATCCGGCCTCGGATCTGAGCTTTG
GCCTGGTTCCCCTGCCCATGCACAACCTGATGCCCACTCCGGAACCGGCA
TCGCCCCTGGCCAAGATTCCTCACAACTTGCTTGTCCAACTGGCCACTCC
AGTGGCCCCCAAGTCTGCCCCCTGCGACAACACCTTCTGCCTGGAGACTC
CAGTCAAGGCCCTGAAGAGGACCCGCAAGGAGATCGTCGCCAAGGAGTCC
CCCATTAAGCGCTACAAGGTCGACGAGCGCAATTACTTCGAGGTGGGATT
GGCCCTGCCCTCGTCTATATATGTCTGAAAGCTTTCTAGACCAT
BS12984.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1062 | CG12496-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-RA | 1537 | CG12496-RA | 104..1167 | 15..1078 | 5320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2409735..2410798 | 1078..15 | 5320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:27 has no hits.
BS12984.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:11 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 1..1062 | 17..1078 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:16 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 96..1167 | 9..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:33 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 106..1166 | 17..1077 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:11 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 96..1167 | 9..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:27 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12496-RA | 106..1166 | 17..1077 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:27 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2409736..2410796 | 17..1077 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:33 Download gff for
BS12984.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2303769..2304829 | 17..1077 | 100 | | Minus |
BS12984.pep Sequence
Translation from 16 to 1077
> BS12984.pep
MLKWTASAQRLNEIPVHDQDANQPQRRRLQRRQRRQRRATIANKENVPDT
VGYTSTPVPITRLRNSPLVLAPLSDIRNVTPEAVVRSQAPQRVQSVRYAT
TLPRFAEDYSPNGLPSGQHLALRGLAPLDPFLGQPRYIVGSGAGVNKLKQ
RRLDEDFVATLEPELQETAVPEPPTPKVEVRPSTPQPASTQMGDQTLDRL
IDAILDSACKANASSKKKPRRSTFNLRRRTLVKQQMESNCPQEVLSPSYA
PGDDPASDLSFGLVPLPMHNLMPTPEPASPLAKIPHNLLVQLATPVAPKS
APCDNTFCLETPVKALKRTRKEIVAKESPIKRYKVDERNYFEVGLALPSS
IYV*
BS12984.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12496-PA | 353 | CG12496-PA | 1..353 | 1..353 | 1820 | 100 | Plus |
| CG12708-PB | 405 | CG12708-PB | 1..253 | 1..259 | 196 | 29.8 | Plus |
| CG12708-PA | 405 | CG12708-PA | 1..253 | 1..259 | 196 | 29.8 | Plus |
| CG15646-PB | 410 | CG15646-PB | 52..272 | 29..259 | 178 | 29.8 | Plus |
| CG15646-PA | 410 | CG15646-PA | 52..272 | 29..259 | 178 | 29.8 | Plus |
