Clone Sequence Records
BS12987.3prime Sequence
813 bp (793 high quality bases) assembled on 2006-10-13
> BS12987.3prime
ATGGTCTAGAAAGCTTCTAGAAAAAGTCCATGTCCCCGCAATTGACGTCC
AGAAAGTCGTGGTCGTAGCTGATTAAATCCTTCAGCGGCGCTCCCTGAGC
CGCCGCCGCTGCTTTGGATGTGGAGGGAAGTTCCGCATTGTCCACAAGAT
TTATATTGATCTCGTGGGTCCTGTACTCAGGGCTGTCGTGCTCCTGCTCA
GCGCCAACAGGGGAGGGTGGCGGGTTGGACAAGCTGCCCGGTTGCTTATC
TTCACTTTGCTCGTCGCCCTGCATGTAGTACTCTTTGCGCTGATTTAACG
TCGGCAGTTCCGTAACCTGCTTGCTGAGGCACTTCTTCAACTCTTCCACC
TTACGGTCCCGCATCAACGTTTCGATCTGCTTTCGAGACTTGCTCAGACT
CTGGCGATCCTCACTAAAAATGCGCTTCTGCTGCTCCTGAGTGATGTTAT
CGTGGTGCTTTATTAGGAACAGGAATACCCCGCCTGGTGTACGTCTCCGT
ATGCCGTTTTTGATCATCATGCCGCCATCGGCTTCAATGCGCTGAGTTTC
CTTGTATAGCTCTAGGCACACATCTATGCCAAGAACCTCCACGACTCGAA
CAAGTAATTCGTCCTTTTCCTCGTACAGTTTGCTGGCCATTTCGGTAGCC
ACATCCGAAGGATCTCTCTCACCCACTTCGTTTAAGTCCAGAATGTGTCT
GGGCTCGCAGAAATCGGAAGATCCGCTGGCCGAAGATGTCCCACGACGTG
ACCGGTGACCCGTTCTACTCTTGACCAAACCGCGCTGTTGATTCCCGGTG
ATGGGCCGACTAG
BS12987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8069-PA | 1362 | Phax-RA | 566..1362 | 813..17 | 3985 | 100 | Minus |
CG8069-PB | 1074 | Phax-RB | 278..1074 | 813..17 | 3985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1591 | CG8069-RB | 698..1494 | 813..17 | 3985 | 100 | Minus |
Phax-RA | 1533 | CG8069-RA | 640..1436 | 813..17 | 3985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9115384..9115660 | 508..232 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 9115719..9115933 | 231..17 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 9114971..9115183 | 813..601 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 9115238..9115330 | 601..509 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:08:22 has no hits.
BS12987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:49 Download gff for
BS12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PB | 278..1074 | 17..813 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:58 Download gff for
BS12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 640..1438 | 13..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:06 Download gff for
BS12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 640..1438 | 13..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:06 Download gff for
BS12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114971..9115183 | 601..813 | 100 | -> | Minus |
2R | 9115239..9115330 | 509..600 | 100 | -> | Minus |
2R | 9115384..9115660 | 232..508 | 100 | -> | Minus |
2R | 9115719..9115935 | 13..231 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:58 Download gff for
BS12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5002476..5002688 | 601..813 | 100 | -> | Minus |
arm_2R | 5002744..5002835 | 509..600 | 100 | -> | Minus |
arm_2R | 5002889..5003165 | 232..508 | 100 | -> | Minus |
arm_2R | 5003224..5003440 | 13..231 | 99 | | Minus |
BS12987.5prime Sequence
798 bp (727 high quality bases) assembled on 2006-10-13
> BS12987.5prime
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGT
BS12987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8069-PA | 1362 | Phax-RA | 1..704 | 95..798 | 3520 | 100 | Plus |
CG8069-PB | 1074 | Phax-RB | 1..416 | 383..798 | 2080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1533 | CG8069-RA | 1..778 | 21..798 | 3890 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 176..836 | 138..798 | 3305 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 1..119 | 21..139 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114449..9115109 | 138..798 | 3305 | 100 | Plus |
2R | 25286936 | 2R | 9114270..9114392 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 4451..4511 | 171..111 | 107 | 63.9 | Minus |
BS12987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:51 Download gff for
BS12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PA | 1..704 | 95..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:03 Download gff for
BS12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..778 | 21..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:22 Download gff for
BS12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..778 | 21..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:22 Download gff for
BS12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114261..9114392 | 8..139 | 96 | -> | Plus |
2R | 9114451..9115109 | 140..798 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:03 Download gff for
BS12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5001766..5001897 | 8..139 | 96 | -> | Plus |
arm_2R | 5001956..5002614 | 140..798 | 100 | | Plus |
BS12987.complete Sequence
1472 bp assembled on 2006-11-01
GenBank Submission: FJ637347
> BS12987.complete
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGG
GTGAGAGAGATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTAC
GAGGAAAAGGACGAATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGA
TGTGTGCCTAGAGCTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCG
GCATGATGATCAAAAACGGCATACGGAGACGTACACCAGGCGGGGTATTC
CTGTTCCTAATAAAGCACCACGATAACATCACTCAGGAGCAGCAGAAGCG
CATTTTTAGTGAGGATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCG
AAACGTTGATGCGGGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGC
AAGCAGGTTACGGAACTGCCGACGTTAAATCAGCGCAAAGAGTACTACAT
GCAGGGCGACGAGCAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACC
CGCCACCCTCCCCTGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTAC
AGGACCCACGAGATCAATATAAATCTTGTGGACAATGCGGAACTTCCCTC
CACATCCAAAGCAGCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAA
TCAGCTACGACCACGACTTTCTGGACGTCAATTGCGGGGACATGGACTTT
TTCTAGAAGCTTTCTAGACCAT
BS12987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1362 | CG8069-PA | 1..1362 | 95..1456 | 6810 | 100 | Plus |
Phax-RB | 1074 | CG8069-PB | 1..1074 | 383..1456 | 5370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1533 | CG8069-RA | 1..1436 | 21..1456 | 7180 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 176..1494 | 138..1456 | 6595 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 1..119 | 21..139 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114449..9115183 | 138..872 | 3675 | 100 | Plus |
2R | 25286936 | 2R | 9115384..9115660 | 965..1241 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 9115719..9115933 | 1242..1456 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 9114270..9114392 | 17..139 | 615 | 100 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 872..964 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:31:00 has no hits.
BS12987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:55 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1362 | 95..1456 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:56 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1449 | 10..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:39 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1436 | 21..1456 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:55 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1449 | 10..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:16 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1436 | 21..1456 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:16 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114270..9114392 | 17..139 | 100 | -> | Plus |
2R | 9114451..9115183 | 140..872 | 100 | -> | Plus |
2R | 9115239..9115330 | 873..964 | 100 | -> | Plus |
2R | 9115384..9115660 | 965..1241 | 100 | -> | Plus |
2R | 9115719..9115933 | 1242..1456 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:39 Download gff for
BS12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5001775..5001897 | 17..139 | 100 | -> | Plus |
arm_2R | 5001956..5002688 | 140..872 | 100 | -> | Plus |
arm_2R | 5002744..5002835 | 873..964 | 100 | -> | Plus |
arm_2R | 5002889..5003165 | 965..1241 | 100 | -> | Plus |
arm_2R | 5003224..5003438 | 1242..1456 | 100 | | Plus |
BS12987.pep Sequence
Translation from 16 to 1455
> BS12987.pep
MVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDDGV
YTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCIKK
LRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWASAL
QEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED
GGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFC
EPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLEL
YKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFSED
RQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGDEQ
SEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAA
AAAQGAPLKDLISYDHDFLDVNCGDMDFF*
BS12987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-PA | 453 | CG8069-PA | 1..453 | 27..479 | 2358 | 100 | Plus |
Phax-PB | 357 | CG8069-PB | 1..357 | 123..479 | 1862 | 100 | Plus |