Clone BS12987 Report

Search the DGRC for BS12987

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptPhax-RA
Protein status:BS12987.pep: gold
Sequenced Size:16

Clone Sequence Records

BS12987.3prime Sequence

813 bp (793 high quality bases) assembled on 2006-10-13

> BS12987.3prime
ATGGTCTAGAAAGCTTCTAGAAAAAGTCCATGTCCCCGCAATTGACGTCC
AGAAAGTCGTGGTCGTAGCTGATTAAATCCTTCAGCGGCGCTCCCTGAGC
CGCCGCCGCTGCTTTGGATGTGGAGGGAAGTTCCGCATTGTCCACAAGAT
TTATATTGATCTCGTGGGTCCTGTACTCAGGGCTGTCGTGCTCCTGCTCA
GCGCCAACAGGGGAGGGTGGCGGGTTGGACAAGCTGCCCGGTTGCTTATC
TTCACTTTGCTCGTCGCCCTGCATGTAGTACTCTTTGCGCTGATTTAACG
TCGGCAGTTCCGTAACCTGCTTGCTGAGGCACTTCTTCAACTCTTCCACC
TTACGGTCCCGCATCAACGTTTCGATCTGCTTTCGAGACTTGCTCAGACT
CTGGCGATCCTCACTAAAAATGCGCTTCTGCTGCTCCTGAGTGATGTTAT
CGTGGTGCTTTATTAGGAACAGGAATACCCCGCCTGGTGTACGTCTCCGT
ATGCCGTTTTTGATCATCATGCCGCCATCGGCTTCAATGCGCTGAGTTTC
CTTGTATAGCTCTAGGCACACATCTATGCCAAGAACCTCCACGACTCGAA
CAAGTAATTCGTCCTTTTCCTCGTACAGTTTGCTGGCCATTTCGGTAGCC
ACATCCGAAGGATCTCTCTCACCCACTTCGTTTAAGTCCAGAATGTGTCT
GGGCTCGCAGAAATCGGAAGATCCGCTGGCCGAAGATGTCCCACGACGTG
ACCGGTGACCCGTTCTACTCTTGACCAAACCGCGCTGTTGATTCCCGGTG
ATGGGCCGACTAG

BS12987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8069-PA 1362 Phax-RA 566..1362 813..17 3985 100 Minus
CG8069-PB 1074 Phax-RB 278..1074 813..17 3985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1591 CG8069-RB 698..1494 813..17 3985 100 Minus
Phax-RA 1533 CG8069-RA 640..1436 813..17 3985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9115384..9115660 508..232 1385 100 Minus
2R 25286936 2R 9115719..9115933 231..17 1075 100 Minus
2R 25286936 2R 9114971..9115183 813..601 1065 100 Minus
2R 25286936 2R 9115238..9115330 601..509 465 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:08:22 has no hits.

BS12987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:49 Download gff for BS12987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PB 278..1074 17..813 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:16:58 Download gff for BS12987.3prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 640..1438 13..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:06 Download gff for BS12987.3prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 640..1438 13..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:06 Download gff for BS12987.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9114971..9115183 601..813 100 -> Minus
2R 9115239..9115330 509..600 100 -> Minus
2R 9115384..9115660 232..508 100 -> Minus
2R 9115719..9115935 13..231 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:16:58 Download gff for BS12987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5002476..5002688 601..813 100 -> Minus
arm_2R 5002744..5002835 509..600 100 -> Minus
arm_2R 5002889..5003165 232..508 100 -> Minus
arm_2R 5003224..5003440 13..231 99   Minus

BS12987.5prime Sequence

798 bp (727 high quality bases) assembled on 2006-10-13

> BS12987.5prime
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGT

BS12987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8069-PA 1362 Phax-RA 1..704 95..798 3520 100 Plus
CG8069-PB 1074 Phax-RB 1..416 383..798 2080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1533 CG8069-RA 1..778 21..798 3890 100 Plus
Phax-RB 1591 CG8069-RB 176..836 138..798 3305 100 Plus
Phax-RB 1591 CG8069-RB 1..119 21..139 595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114449..9115109 138..798 3305 100 Plus
2R 25286936 2R 9114270..9114392 17..139 615 100 Plus
Blast to na_te.dros performed 2015-02-12 11:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 4451..4511 171..111 107 63.9 Minus

BS12987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:51 Download gff for BS12987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PA 1..704 95..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:03 Download gff for BS12987.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..778 21..798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:22 Download gff for BS12987.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..778 21..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:22 Download gff for BS12987.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9114261..9114392 8..139 96 -> Plus
2R 9114451..9115109 140..798 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:03 Download gff for BS12987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5001766..5001897 8..139 96 -> Plus
arm_2R 5001956..5002614 140..798 100   Plus

BS12987.complete Sequence

1472 bp assembled on 2006-11-01

GenBank Submission: FJ637347

> BS12987.complete
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGG
GTGAGAGAGATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTAC
GAGGAAAAGGACGAATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGA
TGTGTGCCTAGAGCTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCG
GCATGATGATCAAAAACGGCATACGGAGACGTACACCAGGCGGGGTATTC
CTGTTCCTAATAAAGCACCACGATAACATCACTCAGGAGCAGCAGAAGCG
CATTTTTAGTGAGGATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCG
AAACGTTGATGCGGGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGC
AAGCAGGTTACGGAACTGCCGACGTTAAATCAGCGCAAAGAGTACTACAT
GCAGGGCGACGAGCAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACC
CGCCACCCTCCCCTGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTAC
AGGACCCACGAGATCAATATAAATCTTGTGGACAATGCGGAACTTCCCTC
CACATCCAAAGCAGCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAA
TCAGCTACGACCACGACTTTCTGGACGTCAATTGCGGGGACATGGACTTT
TTCTAGAAGCTTTCTAGACCAT

BS12987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1362 CG8069-PA 1..1362 95..1456 6810 100 Plus
Phax-RB 1074 CG8069-PB 1..1074 383..1456 5370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1533 CG8069-RA 1..1436 21..1456 7180 100 Plus
Phax-RB 1591 CG8069-RB 176..1494 138..1456 6595 100 Plus
Phax-RB 1591 CG8069-RB 1..119 21..139 595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114449..9115183 138..872 3675 100 Plus
2R 25286936 2R 9115384..9115660 965..1241 1385 100 Plus
2R 25286936 2R 9115719..9115933 1242..1456 1075 100 Plus
2R 25286936 2R 9114270..9114392 17..139 615 100 Plus
2R 25286936 2R 9115238..9115330 872..964 465 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:31:00 has no hits.

BS12987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:55 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 95..1456 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:56 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1449 10..1460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:39 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1436 21..1456 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:55 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1449 10..1460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:16 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1436 21..1456 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:16 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9114270..9114392 17..139 100 -> Plus
2R 9114451..9115183 140..872 100 -> Plus
2R 9115239..9115330 873..964 100 -> Plus
2R 9115384..9115660 965..1241 100 -> Plus
2R 9115719..9115933 1242..1456 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:39 Download gff for BS12987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5001775..5001897 17..139 100 -> Plus
arm_2R 5001956..5002688 140..872 100 -> Plus
arm_2R 5002744..5002835 873..964 100 -> Plus
arm_2R 5002889..5003165 965..1241 100 -> Plus
arm_2R 5003224..5003438 1242..1456 100   Plus

BS12987.pep Sequence

Translation from 16 to 1455

> BS12987.pep
MVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDDGV
YTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCIKK
LRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWASAL
QEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED
GGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFC
EPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLEL
YKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFSED
RQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGDEQ
SEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAA
AAAQGAPLKDLISYDHDFLDVNCGDMDFF*

BS12987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PA 453 CG8069-PA 1..453 27..479 2358 100 Plus
Phax-PB 357 CG8069-PB 1..357 123..479 1862 100 Plus