Clone Sequence Records
BS12988.3prime Sequence
537 bp (537 high quality bases) assembled on 2006-10-13
> BS12988.3prime
ATGGTCTAGAAAGCTTTCACGAGCACTCCTCCTGACTTTTTCTGACGCAG
CGAGCAACTTTGCGTTTAAAGTCGGTATAGGATTCTCGCCATTCCTTGGC
AGCATCTACGTTTGCTGGAGACTCATCGTTCGGATCGGCCAGCATTGATA
TTACAGATATCAAGATAGTCTCCACTGTATGCACGGGTAACCAGCGCTCC
GATGCTTTTTCGTAGCCCCATTTATCGTCTCCAGGCTCATGTAAAATAGA
AATACAGACATCTCCATTCTTCTCAATATTTGGGTGCCAAATTTCTGTAA
CAAACTTCATTCGAGGAGGACGCAACGGATATTCTTTAGGAAAGTAAAGA
TGAGCTTTAAAGAATCCTCCTTCGTACAGTGTATCTGGCGGTCCAATTAT
TAAAACTTCCCAGCGAAATATATCATTCTCATCAATTAAACCAGCGGAGA
ATCCTTCCACTGGATTCTTGTTTAGTTCTGCCAATTGTTTTTTTAACAGT
AAAGATGACTGAAGTTCAGACATGTCGACTGATAACT
BS12988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40045-PA | 507 | CG40045-RA | 1..507 | 523..17 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40045-RA | 740 | CG40045-RA | 164..671 | 523..16 | 2540 | 100 | Minus |
| CG40045-RD | 737 | CG40045-RD | 164..668 | 523..16 | 2485 | 99.4 | Minus |
| CG40045-RB | 868 | CG40045-RB | 336..799 | 479..16 | 2320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24035432..24035790 | 374..16 | 1795 | 100 | Minus |
| 3L | 28110227 | 3L | 24030752..24030857 | 480..375 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 13717609..13717904 | 93..388 | 310 | 73.6 | Plus |
| 3L | 28110227 | 3L | 24028678..24028723 | 523..478 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:14:48 has no hits.
BS12988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:51 Download gff for
BS12988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-PA | 1..507 | 17..523 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:08 Download gff for
BS12988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 162..673 | 13..526 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:44 Download gff for
BS12988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 162..673 | 13..526 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:44 Download gff for
BS12988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24028676..24028723 | 478..526 | 97 | -> | Minus |
| 3L | 24030755..24030857 | 375..477 | 100 | -> | Minus |
| 3L | 24035432..24035792 | 13..374 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:08 Download gff for
BS12988.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24021776..24021823 | 478..526 | 97 | -> | Minus |
| arm_3L | 24023855..24023957 | 375..477 | 100 | -> | Minus |
| arm_3L | 24028532..24028892 | 13..374 | 99 | | Minus |
BS12988.complete Sequence
539 bp assembled on 2006-11-01
GenBank Submission: FJ637348
> BS12988.complete
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGTGAAAGCTTTCTAGACCAT
BS12988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40045-RA | 507 | CG40045-PA | 1..507 | 17..523 | 2535 | 100 | Plus |
| CG40045-RD | 504 | CG40045-PD | 1..504 | 17..523 | 2455 | 99.4 | Plus |
| CG40045-RC | 399 | CG40045-PC | 42..399 | 166..523 | 1790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40045-RA | 740 | CG40045-RA | 164..671 | 17..524 | 2540 | 100 | Plus |
| CG40045-RD | 737 | CG40045-RD | 164..668 | 17..524 | 2460 | 99.4 | Plus |
| CG40045-RB | 868 | CG40045-RB | 336..799 | 61..524 | 2320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24035432..24035790 | 166..524 | 1795 | 100 | Plus |
| 3L | 28110227 | 3L | 24030752..24030857 | 60..165 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 13717609..13717904 | 447..152 | 310 | 73.6 | Minus |
| 3L | 28110227 | 3L | 24028678..24028723 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:55:35 has no hits.
BS12988.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:56 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:58 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 156..667 | 14..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:39 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 164..669 | 17..522 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:56 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 156..667 | 14..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:13 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40045-RA | 164..669 | 17..522 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:13 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24028678..24028723 | 17..62 | 100 | -> | Plus |
| 3L | 24030755..24030857 | 63..165 | 100 | -> | Plus |
| 3L | 24035432..24035788 | 166..522 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:39 Download gff for
BS12988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 24021778..24021823 | 17..62 | 100 | -> | Plus |
| arm_3L | 24023855..24023957 | 63..165 | 100 | -> | Plus |
| arm_3L | 24028532..24028888 | 166..522 | 100 | | Plus |
BS12988.pep Sequence
Translation from 16 to 522
> BS12988.pep
MSELQSSLLLKKQLAELNKNPVEGFSAGLIDENDIFRWEVLIIGPPDTLY
EGGFFKAHLYFPKEYPLRPPRMKFVTEIWHPNIEKNGDVCISILHEPGDD
KWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRESYT
DFKRKVARCVRKSQEECS*
BS12988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40045-PA | 168 | CG40045-PA | 1..168 | 1..168 | 903 | 100 | Plus |
| CG40045-PD | 167 | CG40045-PD | 1..167 | 1..168 | 884 | 99.4 | Plus |
| Ubc87F-PA | 168 | CG9602-PA | 1..166 | 1..166 | 772 | 83.1 | Plus |
| CG40045-PC | 132 | CG40045-PC | 15..132 | 51..168 | 649 | 100 | Plus |
| CG40045-PB | 97 | CG40045-PB | 1..97 | 72..168 | 527 | 100 | Plus |
