Clone Sequence Records
BS12989.3prime Sequence
742 bp (664 high quality bases) assembled on 2006-10-13
> BS12989.3prime
ATGGTCTAGAAAGCTTTTATTGGCGAAAACGGAGGACCGAAGCGGGCAGG
TAGGAGCTACCAGGAGCCGAGGGAGCGGCCACTTGCTGGGCAGCTGGCTG
AGATGCGAAGTTCAGGACGGGAGCCACACCTCCGTTCAGAATGGTGGAGG
ATCCTCCCAGCTGATCGTACTGCGACTGGATGGCCTGCTGGGCGTTGAGG
GCATCCTGGTTGGTGCGGTATTTCACGAAGTGCACCTCGGGCTTGTTGTT
GTTGTTGTTGCGGATAGAGTTCAGCTTGTTGCTCAGATCTCCGATATCAG
CCTGCTTGTTCAGGACATAGATGGCGGTCTCCTGCTGTCCAGCCTGCTTG
GCCAGAGCCACAGCAGCGTTCTCCAGGCCAGTGTTCTCGGGTCCCTTGAT
GAAGATCACACGCAGGGCCTTGTTCAAGGAGGCGGATACCTGCTGAGAGC
CAGCTGGTTCAACGAAGTCCTGCTCATCAGCGGTGTACGTGAAGAACTCC
TTTTGGAGCTCGGCCTGGGGAGCCGCATAGTTGGTGGCAACCGCGGAAGG
AGCAGCTTCGGGGGCAGAAGCAGGTGCATAGGTCTCGGCGGGGGCATCCT
GGCTAGCGGCCACGGAAGGAGAGTAACTGGGTCCGGAAGGAGCAAAGGAT
GCGACAGCTGGGGCAGAAGCTGCAGGCTGGTAGTTATAGCCACTTCTGGC
ACTAACGGCAGCCACAAGGCACAGAGCAATAAGGACGCGCAT
BS12989.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31080-PA | 726 | CG31080-RA | 1..726 | 742..17 | 3630 | 100 | Minus |
CG6460-PA | 744 | CG6460-RA | 398..545 | 360..213 | 540 | 94.5 | Minus |
CG5471-PA | 924 | CG5471-RA | 506..653 | 360..213 | 515 | 93.9 | Minus |
CG5468-PA | 867 | CG5468-RA | 538..677 | 352..213 | 425 | 92.1 | Minus |
CG6478-PA | 861 | CG6478-RA | 473..593 | 405..285 | 355 | 91.7 | Minus |
CG6447-PB | 840 | CG6447-RB | 508..575 | 352..285 | 240 | 94.1 | Minus |
CG6447-PA | 858 | CG6447-RA | 526..593 | 352..285 | 240 | 94.1 | Minus |
CG5476-PA | 930 | CG5476-RA | 589..656 | 352..285 | 240 | 94.1 | Minus |
CG6478-PA | 861 | CG6478-RA | 613..665 | 265..213 | 215 | 96.2 | Minus |
CG6447-PB | 840 | CG6447-RB | 595..647 | 265..213 | 190 | 94.3 | Minus |
CG6447-PA | 858 | CG6447-RA | 613..665 | 265..213 | 190 | 94.3 | Minus |
CG5468-PA | 867 | CG5468-RA | 464..524 | 426..366 | 180 | 91.8 | Minus |
CG6452-PA | 690 | CG6452-RA | 275..340 | 405..340 | 180 | 90.9 | Minus |
CG5476-PA | 930 | CG5476-RA | 690..728 | 251..213 | 145 | 94.8 | Minus |
CG6447-PB | 840 | CG6447-RB | 455..497 | 405..363 | 140 | 93 | Minus |
CG6447-PA | 858 | CG6447-RA | 473..515 | 405..363 | 140 | 93 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 920 | CG31080-RA | 63..788 | 742..17 | 3630 | 100 | Minus |
TwdlJ-RB | 908 | CG5471-RB | 258..655 | 547..150 | 955 | 83 | Minus |
TwdlM-RA | 1030 | CG5468-RA | 425..834 | 514..105 | 950 | 82.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26633872..26634582 | 727..17 | 3555 | 100 | Minus |
3R | 32079331 | 3R | 26630175..26630572 | 547..150 | 955 | 82.7 | Minus |
3R | 32079331 | 3R | 26628099..26628484 | 149..534 | 925 | 82.6 | Plus |
3R | 32079331 | 3R | 26619619..26620028 | 514..105 | 910 | 81.5 | Minus |
3R | 32079331 | 3R | 26624766..26625172 | 105..511 | 865 | 80.8 | Plus |
3R | 32079331 | 3R | 26622698..26623062 | 147..511 | 850 | 82.2 | Plus |
3R | 32079331 | 3R | 26632360..26632724 | 511..147 | 835 | 81.9 | Minus |
3R | 32079331 | 3R | 26626167..26626453 | 149..435 | 520 | 78.7 | Plus |
3R | 32079331 | 3R | 26656933..26657251 | 426..108 | 305 | 73 | Minus |
3R | 32079331 | 3R | 26620800..26621057 | 149..406 | 270 | 73.6 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:15:12 has no hits.
BS12989.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:52 Download gff for
BS12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31080-PA | 1..726 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:13 Download gff for
BS12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 63..790 | 13..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:47 Download gff for
BS12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 63..790 | 13..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:47 Download gff for
BS12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26633872..26634584 | 13..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:13 Download gff for
BS12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22459594..22460306 | 13..727 | 99 | | Minus |
BS12989.5prime Sequence
731 bp (730 high quality bases) assembled on 2006-10-13
> BS12989.5prime
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AACTCCTACCTGCCCGCTTCGGTCCTCCGTT
BS12989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31080-PA | 726 | CG31080-RA | 1..715 | 17..731 | 3550 | 99.8 | Plus |
CG6460-PA | 744 | CG6460-RA | 398..545 | 399..546 | 540 | 94.5 | Plus |
CG5471-PA | 924 | CG5471-RA | 506..653 | 399..546 | 515 | 93.9 | Plus |
CG5468-PA | 867 | CG5468-RA | 538..677 | 407..546 | 425 | 92.1 | Plus |
CG6478-PA | 861 | CG6478-RA | 473..593 | 354..474 | 355 | 91.7 | Plus |
CG6447-PB | 840 | CG6447-RB | 508..575 | 407..474 | 240 | 94.1 | Plus |
CG6447-PA | 858 | CG6447-RA | 526..593 | 407..474 | 240 | 94.1 | Plus |
CG5476-PA | 930 | CG5476-RA | 589..656 | 407..474 | 240 | 94.1 | Plus |
CG6478-PA | 861 | CG6478-RA | 613..665 | 494..546 | 215 | 96.2 | Plus |
CG6447-PB | 840 | CG6447-RB | 595..647 | 494..546 | 190 | 94.3 | Plus |
CG6447-PA | 858 | CG6447-RA | 613..665 | 494..546 | 190 | 94.3 | Plus |
CG5468-PA | 867 | CG5468-RA | 464..524 | 333..393 | 180 | 91.8 | Plus |
CG6452-PA | 690 | CG6452-RA | 275..340 | 354..419 | 180 | 90.9 | Plus |
CG5476-PA | 930 | CG5476-RA | 690..728 | 508..546 | 145 | 94.8 | Plus |
CG6447-PB | 840 | CG6447-RB | 455..497 | 354..396 | 140 | 93 | Plus |
CG6447-PA | 858 | CG6447-RA | 473..515 | 354..396 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 920 | CG31080-RA | 63..777 | 17..731 | 3560 | 99.9 | Plus |
TwdlJ-RB | 908 | CG5471-RB | 258..655 | 212..609 | 955 | 83 | Plus |
TwdlM-RA | 1030 | CG5468-RA | 425..834 | 245..654 | 950 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26633872..26634571 | 32..731 | 3485 | 99.9 | Plus |
3R | 32079331 | 3R | 26630175..26630572 | 212..609 | 955 | 82.7 | Plus |
3R | 32079331 | 3R | 26628099..26628484 | 610..225 | 925 | 82.6 | Minus |
3R | 32079331 | 3R | 26619619..26620028 | 245..654 | 910 | 81.5 | Plus |
3R | 32079331 | 3R | 26624766..26625172 | 654..248 | 865 | 80.8 | Minus |
3R | 32079331 | 3R | 26622698..26623062 | 612..248 | 850 | 82.2 | Minus |
3R | 32079331 | 3R | 26632360..26632724 | 248..612 | 835 | 81.9 | Plus |
3R | 32079331 | 3R | 26626167..26626453 | 610..324 | 520 | 78.7 | Minus |
3R | 32079331 | 3R | 26656933..26657251 | 333..651 | 305 | 73 | Plus |
3R | 32079331 | 3R | 26620800..26621057 | 610..353 | 270 | 73.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:48 has no hits.
BS12989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:52 Download gff for
BS12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31080-PA | 1..715 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:07 Download gff for
BS12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 58..777 | 12..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:21 Download gff for
BS12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 58..777 | 12..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:21 Download gff for
BS12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26633872..26634571 | 32..731 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:07 Download gff for
BS12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22459594..22460293 | 32..731 | 99 | | Plus |
BS12989.complete Sequence
758 bp assembled on 2006-11-01
> BS12989.complete
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AGCTCCTACCTGCCCGCTTCGGTCCTCCGTTTTCGCCAATAAAAGCTTTC
TAGACCAT
BS12989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 726 | CG31080-PA | 1..726 | 17..742 | 3630 | 100 | Plus |
TwdlJ-RB | 825 | CG5471-PB | 220..617 | 212..609 | 955 | 82.7 | Plus |
TwdlK-RA | 744 | CG6460-PA | 224..609 | 225..610 | 925 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 920 | CG31080-RA | 63..788 | 17..742 | 3630 | 100 | Plus |
TwdlJ-RB | 908 | CG5471-RB | 258..655 | 212..609 | 955 | 82.7 | Plus |
TwdlK-RA | 840 | CG6460-RA | 241..626 | 225..610 | 925 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26633872..26634582 | 32..742 | 3555 | 100 | Plus |
3R | 32079331 | 3R | 26630175..26630572 | 212..609 | 955 | 82.7 | Plus |
3R | 32079331 | 3R | 26628099..26628484 | 610..225 | 925 | 82.6 | Minus |
3R | 32079331 | 3R | 26619619..26620028 | 245..654 | 910 | 81.5 | Plus |
3R | 32079331 | 3R | 26624766..26625172 | 654..248 | 865 | 80.8 | Minus |
3R | 32079331 | 3R | 26622698..26623062 | 612..248 | 850 | 82.2 | Minus |
3R | 32079331 | 3R | 26632360..26632724 | 248..612 | 835 | 81.9 | Plus |
3R | 32079331 | 3R | 26626167..26626453 | 610..324 | 520 | 78.7 | Minus |
3R | 32079331 | 3R | 26656933..26657251 | 333..651 | 305 | 73 | Plus |
3R | 32079331 | 3R | 26620800..26621057 | 610..353 | 270 | 73.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:49:11 has no hits.
BS12989.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:57 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 1..726 | 17..742 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:00 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 56..788 | 12..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:40 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 63..786 | 17..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:57 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 56..788 | 12..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:55 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 63..786 | 17..740 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:55 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26633872..26634580 | 32..740 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:40 Download gff for
BS12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22459594..22460302 | 32..740 | 100 | | Plus |
BS12989.pep Sequence
Translation from 16 to 741
> BS12989.pep
MRVLIALCLVAAVSARSGYNYQPAASAPAVASFAPSGPSYSPSVAASQDA
PAETYAPASAPEAAPSAVATNYAAPQAELQKEFFTYTADEQDFVEPAGSQ
QVSASLNKALRVIFIKGPENTGLENAAVALAKQAGQQETAIYVLNKQADI
GDLSNKLNSIRNNNNNKPEVHFVKYRTNQDALNAQQAIQSQYDQLGGSST
ILNGGVAPVLNFASQPAAQQVAAPSAPGSSYLPASVLRFRQ*
BS12989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-PA | 241 | CG31080-PA | 1..241 | 1..241 | 1200 | 100 | Plus |
TwdlK-PA | 247 | CG6460-PA | 1..243 | 1..238 | 781 | 65.6 | Plus |
TwdlJ-PB | 274 | CG5471-PB | 6..270 | 5..238 | 755 | 61.3 | Plus |
TwdlM-PA | 288 | CG5468-PA | 1..286 | 1..238 | 655 | 53.3 | Plus |
TwdlL-PB | 279 | CG6447-PB | 101..278 | 62..240 | 615 | 69.8 | Plus |