Clone BS12989 Report

Search the DGRC for BS12989

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlH-RA
Protein status:BS12989.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12989.3prime Sequence

742 bp (664 high quality bases) assembled on 2006-10-13

> BS12989.3prime
ATGGTCTAGAAAGCTTTTATTGGCGAAAACGGAGGACCGAAGCGGGCAGG
TAGGAGCTACCAGGAGCCGAGGGAGCGGCCACTTGCTGGGCAGCTGGCTG
AGATGCGAAGTTCAGGACGGGAGCCACACCTCCGTTCAGAATGGTGGAGG
ATCCTCCCAGCTGATCGTACTGCGACTGGATGGCCTGCTGGGCGTTGAGG
GCATCCTGGTTGGTGCGGTATTTCACGAAGTGCACCTCGGGCTTGTTGTT
GTTGTTGTTGCGGATAGAGTTCAGCTTGTTGCTCAGATCTCCGATATCAG
CCTGCTTGTTCAGGACATAGATGGCGGTCTCCTGCTGTCCAGCCTGCTTG
GCCAGAGCCACAGCAGCGTTCTCCAGGCCAGTGTTCTCGGGTCCCTTGAT
GAAGATCACACGCAGGGCCTTGTTCAAGGAGGCGGATACCTGCTGAGAGC
CAGCTGGTTCAACGAAGTCCTGCTCATCAGCGGTGTACGTGAAGAACTCC
TTTTGGAGCTCGGCCTGGGGAGCCGCATAGTTGGTGGCAACCGCGGAAGG
AGCAGCTTCGGGGGCAGAAGCAGGTGCATAGGTCTCGGCGGGGGCATCCT
GGCTAGCGGCCACGGAAGGAGAGTAACTGGGTCCGGAAGGAGCAAAGGAT
GCGACAGCTGGGGCAGAAGCTGCAGGCTGGTAGTTATAGCCACTTCTGGC
ACTAACGGCAGCCACAAGGCACAGAGCAATAAGGACGCGCAT

BS12989.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31080-PA 726 CG31080-RA 1..726 742..17 3630 100 Minus
CG6460-PA 744 CG6460-RA 398..545 360..213 540 94.5 Minus
CG5471-PA 924 CG5471-RA 506..653 360..213 515 93.9 Minus
CG5468-PA 867 CG5468-RA 538..677 352..213 425 92.1 Minus
CG6478-PA 861 CG6478-RA 473..593 405..285 355 91.7 Minus
CG6447-PB 840 CG6447-RB 508..575 352..285 240 94.1 Minus
CG6447-PA 858 CG6447-RA 526..593 352..285 240 94.1 Minus
CG5476-PA 930 CG5476-RA 589..656 352..285 240 94.1 Minus
CG6478-PA 861 CG6478-RA 613..665 265..213 215 96.2 Minus
CG6447-PB 840 CG6447-RB 595..647 265..213 190 94.3 Minus
CG6447-PA 858 CG6447-RA 613..665 265..213 190 94.3 Minus
CG5468-PA 867 CG5468-RA 464..524 426..366 180 91.8 Minus
CG6452-PA 690 CG6452-RA 275..340 405..340 180 90.9 Minus
CG5476-PA 930 CG5476-RA 690..728 251..213 145 94.8 Minus
CG6447-PB 840 CG6447-RB 455..497 405..363 140 93 Minus
CG6447-PA 858 CG6447-RA 473..515 405..363 140 93 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 920 CG31080-RA 63..788 742..17 3630 100 Minus
TwdlJ-RB 908 CG5471-RB 258..655 547..150 955 83 Minus
TwdlM-RA 1030 CG5468-RA 425..834 514..105 950 82.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26633872..26634582 727..17 3555 100 Minus
3R 32079331 3R 26630175..26630572 547..150 955 82.7 Minus
3R 32079331 3R 26628099..26628484 149..534 925 82.6 Plus
3R 32079331 3R 26619619..26620028 514..105 910 81.5 Minus
3R 32079331 3R 26624766..26625172 105..511 865 80.8 Plus
3R 32079331 3R 26622698..26623062 147..511 850 82.2 Plus
3R 32079331 3R 26632360..26632724 511..147 835 81.9 Minus
3R 32079331 3R 26626167..26626453 149..435 520 78.7 Plus
3R 32079331 3R 26656933..26657251 426..108 305 73 Minus
3R 32079331 3R 26620800..26621057 149..406 270 73.6 Plus
Blast to na_te.dros performed on 2015-02-08 12:15:12 has no hits.

BS12989.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:52 Download gff for BS12989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31080-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:13 Download gff for BS12989.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 63..790 13..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:47 Download gff for BS12989.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 63..790 13..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:47 Download gff for BS12989.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26633872..26634584 13..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:13 Download gff for BS12989.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22459594..22460306 13..727 99   Minus

BS12989.5prime Sequence

731 bp (730 high quality bases) assembled on 2006-10-13

> BS12989.5prime
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AACTCCTACCTGCCCGCTTCGGTCCTCCGTT

BS12989.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31080-PA 726 CG31080-RA 1..715 17..731 3550 99.8 Plus
CG6460-PA 744 CG6460-RA 398..545 399..546 540 94.5 Plus
CG5471-PA 924 CG5471-RA 506..653 399..546 515 93.9 Plus
CG5468-PA 867 CG5468-RA 538..677 407..546 425 92.1 Plus
CG6478-PA 861 CG6478-RA 473..593 354..474 355 91.7 Plus
CG6447-PB 840 CG6447-RB 508..575 407..474 240 94.1 Plus
CG6447-PA 858 CG6447-RA 526..593 407..474 240 94.1 Plus
CG5476-PA 930 CG5476-RA 589..656 407..474 240 94.1 Plus
CG6478-PA 861 CG6478-RA 613..665 494..546 215 96.2 Plus
CG6447-PB 840 CG6447-RB 595..647 494..546 190 94.3 Plus
CG6447-PA 858 CG6447-RA 613..665 494..546 190 94.3 Plus
CG5468-PA 867 CG5468-RA 464..524 333..393 180 91.8 Plus
CG6452-PA 690 CG6452-RA 275..340 354..419 180 90.9 Plus
CG5476-PA 930 CG5476-RA 690..728 508..546 145 94.8 Plus
CG6447-PB 840 CG6447-RB 455..497 354..396 140 93 Plus
CG6447-PA 858 CG6447-RA 473..515 354..396 140 93 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 920 CG31080-RA 63..777 17..731 3560 99.9 Plus
TwdlJ-RB 908 CG5471-RB 258..655 212..609 955 83 Plus
TwdlM-RA 1030 CG5468-RA 425..834 245..654 950 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26633872..26634571 32..731 3485 99.9 Plus
3R 32079331 3R 26630175..26630572 212..609 955 82.7 Plus
3R 32079331 3R 26628099..26628484 610..225 925 82.6 Minus
3R 32079331 3R 26619619..26620028 245..654 910 81.5 Plus
3R 32079331 3R 26624766..26625172 654..248 865 80.8 Minus
3R 32079331 3R 26622698..26623062 612..248 850 82.2 Minus
3R 32079331 3R 26632360..26632724 248..612 835 81.9 Plus
3R 32079331 3R 26626167..26626453 610..324 520 78.7 Minus
3R 32079331 3R 26656933..26657251 333..651 305 73 Plus
3R 32079331 3R 26620800..26621057 610..353 270 73.6 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:48 has no hits.

BS12989.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:52 Download gff for BS12989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31080-PA 1..715 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:07 Download gff for BS12989.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 58..777 12..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:21 Download gff for BS12989.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 58..777 12..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:21 Download gff for BS12989.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26633872..26634571 32..731 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:07 Download gff for BS12989.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22459594..22460293 32..731 99   Plus

BS12989.complete Sequence

758 bp assembled on 2006-11-01

> BS12989.complete
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AGCTCCTACCTGCCCGCTTCGGTCCTCCGTTTTCGCCAATAAAAGCTTTC
TAGACCAT

BS12989.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 726 CG31080-PA 1..726 17..742 3630 100 Plus
TwdlJ-RB 825 CG5471-PB 220..617 212..609 955 82.7 Plus
TwdlK-RA 744 CG6460-PA 224..609 225..610 925 82.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 920 CG31080-RA 63..788 17..742 3630 100 Plus
TwdlJ-RB 908 CG5471-RB 258..655 212..609 955 82.7 Plus
TwdlK-RA 840 CG6460-RA 241..626 225..610 925 82.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26633872..26634582 32..742 3555 100 Plus
3R 32079331 3R 26630175..26630572 212..609 955 82.7 Plus
3R 32079331 3R 26628099..26628484 610..225 925 82.6 Minus
3R 32079331 3R 26619619..26620028 245..654 910 81.5 Plus
3R 32079331 3R 26624766..26625172 654..248 865 80.8 Minus
3R 32079331 3R 26622698..26623062 612..248 850 82.2 Minus
3R 32079331 3R 26632360..26632724 248..612 835 81.9 Plus
3R 32079331 3R 26626167..26626453 610..324 520 78.7 Minus
3R 32079331 3R 26656933..26657251 333..651 305 73 Plus
3R 32079331 3R 26620800..26621057 610..353 270 73.6 Minus
Blast to na_te.dros performed on 2014-11-27 19:49:11 has no hits.

BS12989.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:57 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:00 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 56..788 12..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:40 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 63..786 17..740 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:57 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 56..788 12..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:55 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 63..786 17..740 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:55 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26633872..26634580 32..740 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:40 Download gff for BS12989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22459594..22460302 32..740 100   Plus

BS12989.pep Sequence

Translation from 16 to 741

> BS12989.pep
MRVLIALCLVAAVSARSGYNYQPAASAPAVASFAPSGPSYSPSVAASQDA
PAETYAPASAPEAAPSAVATNYAAPQAELQKEFFTYTADEQDFVEPAGSQ
QVSASLNKALRVIFIKGPENTGLENAAVALAKQAGQQETAIYVLNKQADI
GDLSNKLNSIRNNNNNKPEVHFVKYRTNQDALNAQQAIQSQYDQLGGSST
ILNGGVAPVLNFASQPAAQQVAAPSAPGSSYLPASVLRFRQ*

BS12989.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-PA 241 CG31080-PA 1..241 1..241 1200 100 Plus
TwdlK-PA 247 CG6460-PA 1..243 1..238 781 65.6 Plus
TwdlJ-PB 274 CG5471-PB 6..270 5..238 755 61.3 Plus
TwdlM-PA 288 CG5468-PA 1..286 1..238 655 53.3 Plus
TwdlL-PB 279 CG6447-PB 101..278 62..240 615 69.8 Plus