Clone Sequence Records
BS12990.3prime Sequence
624 bp (604 high quality bases) assembled on 2006-10-13
> BS12990.3prime
ATGGTCTAGAAAGCTTTCAGTTTTTGGCCTTGACTGCCTGCTGAGAGGTC
TTGTAGACGAAGCTGTGGGCCTCATCGTAGTAGGGATTGGTAGCATCACG
AACGCGTTCCATCCACTTGGCCACCTTGGGGAATTGCTTCTCATTTACGT
TGTACTGGCAGAGCTTCATCTGATTAATTTCTGAAGACCCGAAGATGTCT
GCCACGGTAAGTTTGTCGCCGACTAAGAAGTCCTTTTCCAGCCAGAGGCG
TTCCAGTAGACCCAAATTACTCTCCACATCCTTGATTAGCTTCTTGACAG
ACTCTGGCTTGGGAGCCGGCGCCAGTCCCTTTGCCGGAAGAAGCCACACC
TGACGGAAGAACAGGGAGCAGACCAAGCGGACATTGAAATGCTGCCACTC
GAGGAACTCGTCCACCCGCGCGCGTTCCTCCAAGGTTTTGGGGTACAGCT
GTTCACTGAAGACTCCCTTGTCCGCGAGATATCGCACTATGGAGACACTC
TCGCCCAACTGAAATTTACCATCCACGATGGCCGGCACCTTTTGGAACCG
ATTTATACTGCGATATTCGTCGGTCAATTGCTCCTGTTTTCGCAGGGCAA
CCGGGCAGTCTTCAAATGGGGTCT
BS12990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30000-PA | 687 | CG30000-RA | 80..687 | 624..17 | 3040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 997 | CG30000-RA | 179..786 | 624..17 | 3040 | 100 | Minus |
GstT2-RA | 887 | CG30005-RA | 172..677 | 607..102 | 335 | 72.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9606446..9606763 | 483..166 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 9606825..9606973 | 165..17 | 745 | 100 | Minus |
2R | 25286936 | 2R | 9606280..9606382 | 585..483 | 515 | 100 | Minus |
2R | 25286936 | 2R | 9606166..9606204 | 624..586 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:21:49 has no hits.
BS12990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:53 Download gff for
BS12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-PA | 80..687 | 17..624 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:05 Download gff for
BS12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 179..797 | 5..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:39 Download gff for
BS12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 179..797 | 5..624 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:39 Download gff for
BS12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9606166..9606204 | 586..624 | 100 | -> | Minus |
2R | 9606280..9606382 | 483..585 | 100 | -> | Minus |
2R | 9606447..9606763 | 166..482 | 100 | -> | Minus |
2R | 9606825..9606984 | 5..165 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:05 Download gff for
BS12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5493671..5493709 | 586..624 | 100 | -> | Minus |
arm_2R | 5493785..5493887 | 483..585 | 100 | -> | Minus |
arm_2R | 5493952..5494268 | 166..482 | 100 | -> | Minus |
arm_2R | 5494330..5494489 | 5..165 | 96 | | Minus |
BS12990.5prime Sequence
650 bp (648 high quality bases) assembled on 2006-10-13
> BS12990.5prime
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTTAATCA
GATGAAGCTCTGCCAGTACAACGTAAATGAAAAAGCATTTCCCCAAGGTG
GCCAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGA
BS12990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30000-PA | 687 | CG30000-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
CG30000-PA | 687 | CG30000-RA | 565..632 | 583..650 | 315 | 98.5 | Plus |
CG30000-PA | 687 | CG30000-RA | 527..563 | 544..580 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 997 | CG30000-RA | 100..731 | 17..650 | 3090 | 99.4 | Plus |
GstT2-RA | 887 | CG30005-RA | 172..677 | 113..620 | 295 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9606446..9606763 | 237..555 | 1545 | 99.7 | Plus |
2R | 25286936 | 2R | 9606087..9606204 | 17..134 | 590 | 100 | Plus |
2R | 25286936 | 2R | 9606280..9606382 | 135..237 | 515 | 100 | Plus |
2R | 25286936 | 2R | 9606825..9606918 | 556..650 | 395 | 96.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:22:38 has no hits.
BS12990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:53 Download gff for
BS12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-PA | 1..631 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:18 Download gff for
BS12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..730 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:08 Download gff for
BS12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..730 | 17..649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:08 Download gff for
BS12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9606087..9606204 | 17..134 | 100 | -> | Plus |
2R | 9606280..9606382 | 135..237 | 100 | -> | Plus |
2R | 9606447..9606763 | 238..555 | 99 | -> | Plus |
2R | 9606825..9606917 | 556..649 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:18 Download gff for
BS12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5493592..5493709 | 17..134 | 100 | -> | Plus |
arm_2R | 5493785..5493887 | 135..237 | 100 | -> | Plus |
arm_2R | 5493952..5494268 | 238..555 | 99 | -> | Plus |
arm_2R | 5494330..5494422 | 556..649 | 96 | | Plus |
BS12990.complete Sequence
719 bp assembled on 2006-11-01
GenBank Submission: FJ637349
> BS12990.complete
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAG
ATGAAGCTCTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGC
CAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGG
CCCACAGCTTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAAC
TGAAAGCTTTCTAGACCAT
BS12990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 687 | CG30000-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
GstT2-RA | 687 | CG30005-PA | 97..602 | 113..618 | 295 | 70.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 997 | CG30000-RA | 100..786 | 17..703 | 3435 | 100 | Plus |
GstT2-RA | 887 | CG30005-RA | 172..677 | 113..618 | 295 | 70.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9606446..9606763 | 237..554 | 1590 | 100 | Plus |
2R | 25286936 | 2R | 9606825..9606973 | 555..703 | 745 | 100 | Plus |
2R | 25286936 | 2R | 9606087..9606204 | 17..134 | 590 | 100 | Plus |
2R | 25286936 | 2R | 9606280..9606382 | 135..237 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:44:56 has no hits.
BS12990.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:09 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-RA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:03 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-RA | 98..795 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:31:32 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..785 | 17..702 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:10 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-RA | 98..795 | 17..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:40 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..785 | 17..702 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:40 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9606087..9606204 | 17..134 | 100 | -> | Plus |
2R | 9606280..9606382 | 135..237 | 100 | -> | Plus |
2R | 9606447..9606763 | 238..554 | 100 | -> | Plus |
2R | 9606825..9606972 | 555..702 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:31:32 Download gff for
BS12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5493592..5493709 | 17..134 | 100 | -> | Plus |
arm_2R | 5493785..5493887 | 135..237 | 100 | -> | Plus |
arm_2R | 5493952..5494268 | 238..554 | 100 | -> | Plus |
arm_2R | 5494330..5494477 | 555..702 | 100 | | Plus |
BS12990.pep Sequence
Translation from 16 to 702
> BS12990.pep
MSKAIKYYYDFLSQPSRALWIAMKLGKTPFEDCPVALRKQEQLTDEYRSI
NRFQKVPAIVDGKFQLGESVSIVRYLADKGVFSEQLYPKTLEERARVDEF
LEWQHFNVRLVCSLFFRQVWLLPAKGLAPAPKPESVKKLIKDVESNLGLL
ERLWLEKDFLVGDKLTVADIFGSSEINQMKLCQYNVNEKQFPKVAKWMER
VRDATNPYYDEAHSFVYKTSQQAVKAKN*
BS12990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-PA | 228 | CG30000-PA | 1..228 | 1..228 | 1190 | 100 | Plus |
GstT2-PA | 228 | CG30005-PA | 1..227 | 1..227 | 828 | 65.6 | Plus |
GstT3-PC | 228 | CG1702-PC | 1..227 | 1..227 | 593 | 51.1 | Plus |
GstT3-PA | 228 | CG1702-PA | 1..227 | 1..227 | 593 | 51.1 | Plus |
GstT3-PB | 268 | CG1702-PB | 41..267 | 1..227 | 593 | 51.1 | Plus |