Clone BS12990 Report

Search the DGRC for BS12990

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:129
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptGstT1-RA
Protein status:BS12990.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS12990.3prime Sequence

624 bp (604 high quality bases) assembled on 2006-10-13

> BS12990.3prime
ATGGTCTAGAAAGCTTTCAGTTTTTGGCCTTGACTGCCTGCTGAGAGGTC
TTGTAGACGAAGCTGTGGGCCTCATCGTAGTAGGGATTGGTAGCATCACG
AACGCGTTCCATCCACTTGGCCACCTTGGGGAATTGCTTCTCATTTACGT
TGTACTGGCAGAGCTTCATCTGATTAATTTCTGAAGACCCGAAGATGTCT
GCCACGGTAAGTTTGTCGCCGACTAAGAAGTCCTTTTCCAGCCAGAGGCG
TTCCAGTAGACCCAAATTACTCTCCACATCCTTGATTAGCTTCTTGACAG
ACTCTGGCTTGGGAGCCGGCGCCAGTCCCTTTGCCGGAAGAAGCCACACC
TGACGGAAGAACAGGGAGCAGACCAAGCGGACATTGAAATGCTGCCACTC
GAGGAACTCGTCCACCCGCGCGCGTTCCTCCAAGGTTTTGGGGTACAGCT
GTTCACTGAAGACTCCCTTGTCCGCGAGATATCGCACTATGGAGACACTC
TCGCCCAACTGAAATTTACCATCCACGATGGCCGGCACCTTTTGGAACCG
ATTTATACTGCGATATTCGTCGGTCAATTGCTCCTGTTTTCGCAGGGCAA
CCGGGCAGTCTTCAAATGGGGTCT

BS12990.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30000-PA 687 CG30000-RA 80..687 624..17 3040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 997 CG30000-RA 179..786 624..17 3040 100 Minus
GstT2-RA 887 CG30005-RA 172..677 607..102 335 72.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9606446..9606763 483..166 1590 100 Minus
2R 25286936 2R 9606825..9606973 165..17 745 100 Minus
2R 25286936 2R 9606280..9606382 585..483 515 100 Minus
2R 25286936 2R 9606166..9606204 624..586 195 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:21:49 has no hits.

BS12990.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:53 Download gff for BS12990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30000-PA 80..687 17..624 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:05 Download gff for BS12990.3prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 179..797 5..624 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:39 Download gff for BS12990.3prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 179..797 5..624 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:39 Download gff for BS12990.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9606166..9606204 586..624 100 -> Minus
2R 9606280..9606382 483..585 100 -> Minus
2R 9606447..9606763 166..482 100 -> Minus
2R 9606825..9606984 5..165 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:05 Download gff for BS12990.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5493671..5493709 586..624 100 -> Minus
arm_2R 5493785..5493887 483..585 100 -> Minus
arm_2R 5493952..5494268 166..482 100 -> Minus
arm_2R 5494330..5494489 5..165 96   Minus

BS12990.5prime Sequence

650 bp (648 high quality bases) assembled on 2006-10-13

> BS12990.5prime
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTTAATCA
GATGAAGCTCTGCCAGTACAACGTAAATGAAAAAGCATTTCCCCAAGGTG
GCCAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGA

BS12990.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG30000-PA 687 CG30000-RA 1..528 17..544 2640 100 Plus
CG30000-PA 687 CG30000-RA 565..632 583..650 315 98.5 Plus
CG30000-PA 687 CG30000-RA 527..563 544..580 185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 997 CG30000-RA 100..731 17..650 3090 99.4 Plus
GstT2-RA 887 CG30005-RA 172..677 113..620 295 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9606446..9606763 237..555 1545 99.7 Plus
2R 25286936 2R 9606087..9606204 17..134 590 100 Plus
2R 25286936 2R 9606280..9606382 135..237 515 100 Plus
2R 25286936 2R 9606825..9606918 556..650 395 96.8 Plus
Blast to na_te.dros performed on 2015-02-10 17:22:38 has no hits.

BS12990.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:53 Download gff for BS12990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30000-PA 1..631 17..649 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:18 Download gff for BS12990.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..730 17..649 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:08 Download gff for BS12990.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..730 17..649 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:08 Download gff for BS12990.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9606087..9606204 17..134 100 -> Plus
2R 9606280..9606382 135..237 100 -> Plus
2R 9606447..9606763 238..555 99 -> Plus
2R 9606825..9606917 556..649 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:18 Download gff for BS12990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5493592..5493709 17..134 100 -> Plus
arm_2R 5493785..5493887 135..237 100 -> Plus
arm_2R 5493952..5494268 238..555 99 -> Plus
arm_2R 5494330..5494422 556..649 96   Plus

BS12990.complete Sequence

719 bp assembled on 2006-11-01

GenBank Submission: FJ637349

> BS12990.complete
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAG
ATGAAGCTCTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGC
CAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGG
CCCACAGCTTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAAC
TGAAAGCTTTCTAGACCAT

BS12990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 687 CG30000-PA 1..687 17..703 3435 100 Plus
GstT2-RA 687 CG30005-PA 97..602 113..618 295 70.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 997 CG30000-RA 100..786 17..703 3435 100 Plus
GstT2-RA 887 CG30005-RA 172..677 113..618 295 70.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9606446..9606763 237..554 1590 100 Plus
2R 25286936 2R 9606825..9606973 555..703 745 100 Plus
2R 25286936 2R 9606087..9606204 17..134 590 100 Plus
2R 25286936 2R 9606280..9606382 135..237 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:44:56 has no hits.

BS12990.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:47:09 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
CG30000-RA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:35:03 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
CG30000-RA 98..795 17..715 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:31:32 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..785 17..702 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:47:10 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
CG30000-RA 98..795 17..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:40 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..785 17..702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:40 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9606087..9606204 17..134 100 -> Plus
2R 9606280..9606382 135..237 100 -> Plus
2R 9606447..9606763 238..554 100 -> Plus
2R 9606825..9606972 555..702 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:31:32 Download gff for BS12990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5493592..5493709 17..134 100 -> Plus
arm_2R 5493785..5493887 135..237 100 -> Plus
arm_2R 5493952..5494268 238..554 100 -> Plus
arm_2R 5494330..5494477 555..702 100   Plus

BS12990.pep Sequence

Translation from 16 to 702

> BS12990.pep
MSKAIKYYYDFLSQPSRALWIAMKLGKTPFEDCPVALRKQEQLTDEYRSI
NRFQKVPAIVDGKFQLGESVSIVRYLADKGVFSEQLYPKTLEERARVDEF
LEWQHFNVRLVCSLFFRQVWLLPAKGLAPAPKPESVKKLIKDVESNLGLL
ERLWLEKDFLVGDKLTVADIFGSSEINQMKLCQYNVNEKQFPKVAKWMER
VRDATNPYYDEAHSFVYKTSQQAVKAKN*

BS12990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-PA 228 CG30000-PA 1..228 1..228 1190 100 Plus
GstT2-PA 228 CG30005-PA 1..227 1..227 828 65.6 Plus
GstT3-PC 228 CG1702-PC 1..227 1..227 593 51.1 Plus
GstT3-PA 228 CG1702-PA 1..227 1..227 593 51.1 Plus
GstT3-PB 268 CG1702-PB 41..267 1..227 593 51.1 Plus