Clone Sequence Records
BS13001.5prime Sequence
741 bp (721 high quality bases) assembled on 2006-10-13
> BS13001.5prime
GAAGTTATCAGTCCTCATGCCGAANACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTG
BS13001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4437-PA | 1110 | PGRP-LF-RA | 1..725 | 17..741 | 3606 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1355 | CG4437-RA | 78..802 | 17..741 | 3614 | 99.9 | Plus |
UGP-RE | 2686 | CG4347-RE | 2617..2669 | 741..689 | 250 | 98.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9350442..9350828 | 306..692 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 9349896..9350048 | 156..308 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9349686..9349824 | 17..155 | 684 | 99.3 | Plus |
3L | 28110227 | 3L | 9350884..9350936 | 689..741 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:41:51 has no hits.
BS13001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:58 Download gff for
BS13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4437-PA | 1..725 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:48 Download gff for
BS13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 73..802 | 12..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:41 Download gff for
BS13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 73..802 | 12..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:41 Download gff for
BS13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9349681..9349824 | 12..155 | 97 | -> | Plus |
3L | 9349896..9350047 | 156..307 | 100 | -> | Plus |
3L | 9350444..9350828 | 308..692 | 100 | -> | Plus |
3L | 9350888..9350936 | 693..741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:48 Download gff for
BS13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9342781..9342924 | 12..155 | 97 | -> | Plus |
arm_3L | 9342996..9343147 | 156..307 | 100 | -> | Plus |
arm_3L | 9343544..9343928 | 308..692 | 100 | -> | Plus |
arm_3L | 9343988..9344036 | 693..741 | 100 | | Plus |
BS13001.complete Sequence
1142 bp assembled on 2010-06-25
GenBank Submission: KX806335
> BS13001.complete
GAAGTTATCAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCA
GCCACCTATAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGA
GATTTGTGGCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACT
TTTCGAGTGCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAA
GGATATTAACTATAATTTCGTTGCGGCTGGGGACGAAAACATCTACGAGG
CCAGAGGTTGGGATCACAGCTGTGAACCTCCAAAAGATGCAGATGAACTA
GTCGTGGCCTTTATTGGTCCATCGAGTAGCAATAAAAAGATAGCATTAGA
ACTAATCAAACAGGGCATAAAACTTGGTCATATAAGCAAGAACTATAGTC
TAATTGACGATTTAGAAAAGTCATAGAAGCTTTCTAGACCAT
BS13001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1110 | CG4437-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-RA | 1355 | CG4437-RA | 78..1189 | 17..1128 | 5560 | 100 | Plus |
UGP-RE | 2686 | CG4347-RE | 2230..2669 | 1128..689 | 2185 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9350884..9351323 | 689..1128 | 2185 | 99.8 | Plus |
3L | 28110227 | 3L | 9350442..9350828 | 306..692 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 9349896..9350048 | 156..308 | 765 | 100 | Plus |
3L | 28110227 | 3L | 9349686..9349824 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:47:33 has no hits.
BS13001.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:45 Download gff for
BS13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 76..1185 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:39 Download gff for
BS13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 78..1187 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:07 Download gff for
BS13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LF-RA | 78..1187 | 17..1126 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:07 Download gff for
BS13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9349686..9349824 | 17..155 | 100 | -> | Plus |
3L | 9349896..9350047 | 156..307 | 100 | -> | Plus |
3L | 9350444..9350828 | 308..692 | 100 | -> | Plus |
3L | 9350888..9351321 | 693..1126 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:39 Download gff for
BS13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9342786..9342924 | 17..155 | 100 | -> | Plus |
arm_3L | 9342996..9343147 | 156..307 | 100 | -> | Plus |
arm_3L | 9343544..9343928 | 308..692 | 100 | -> | Plus |
arm_3L | 9343988..9344421 | 693..1126 | 100 | | Plus |
BS13001.pep Sequence
Translation from 16 to 1125
> BS13001.pep
MPKTVVVTHPGKPINNEKRFRFELLYFCVILLMVVGLAAGYFMWMMSFST
HSPNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVC
IYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGA
ISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLS
PTESPGQKLFELMQNWPRFTQDPTSLRLLSNETVKIVTRPYWLAQPPIVP
LTPLKLPIESVRFVATNTPSCFTQAECTFRVRLLQNWHIESNGYKDINYN
FVAAGDENIYEARGWDHSCEPPKDADELVVAFIGPSSSNKKIALELIKQG
IKLGHISKNYSLIDDLEKS*
BS13001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LF-PA | 369 | CG4437-PA | 1..369 | 1..369 | 1988 | 100 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 160..328 | 54..222 | 471 | 48.5 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 331..499 | 54..222 | 471 | 48.5 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 331..499 | 54..222 | 471 | 48.5 | Plus |
PGRP-LC-PC | 511 | CG4432-PC | 343..494 | 65..216 | 383 | 44.7 | Plus |
PGRP-LC-PE | 329 | CG4432-PE | 149..299 | 220..362 | 191 | 29.8 | Plus |
PGRP-LC-PD | 500 | CG4432-PD | 320..470 | 220..362 | 191 | 29.8 | Plus |
PGRP-LC-PA | 500 | CG4432-PA | 320..470 | 220..362 | 191 | 29.8 | Plus |