Clone BS13001 Report

Search the DGRC for BS13001

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LF-RA
Protein status:BS13001.pep: full length peptide match
Sequenced Size:1142

Clone Sequence Records

BS13001.5prime Sequence

741 bp (721 high quality bases) assembled on 2006-10-13

> BS13001.5prime
GAAGTTATCAGTCCTCATGCCGAANACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTG

BS13001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4437-PA 1110 PGRP-LF-RA 1..725 17..741 3606 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1355 CG4437-RA 78..802 17..741 3614 99.9 Plus
UGP-RE 2686 CG4347-RE 2617..2669 741..689 250 98.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9350442..9350828 306..692 1935 100 Plus
3L 28110227 3L 9349896..9350048 156..308 765 100 Plus
3L 28110227 3L 9349686..9349824 17..155 684 99.3 Plus
3L 28110227 3L 9350884..9350936 689..741 250 98.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:41:51 has no hits.

BS13001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:58 Download gff for BS13001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4437-PA 1..725 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:48 Download gff for BS13001.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 73..802 12..741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:41 Download gff for BS13001.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 73..802 12..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:41 Download gff for BS13001.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9349681..9349824 12..155 97 -> Plus
3L 9349896..9350047 156..307 100 -> Plus
3L 9350444..9350828 308..692 100 -> Plus
3L 9350888..9350936 693..741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:48 Download gff for BS13001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9342781..9342924 12..155 97 -> Plus
arm_3L 9342996..9343147 156..307 100 -> Plus
arm_3L 9343544..9343928 308..692 100 -> Plus
arm_3L 9343988..9344036 693..741 100   Plus

BS13001.complete Sequence

1142 bp assembled on 2010-06-25

GenBank Submission: KX806335

> BS13001.complete
GAAGTTATCAGTCGACATGCCGAAAACAGTGGTAGTTACTCACCCAGGAA
AACCGATAAATAACGAGAAAAGATTTCGCTTCGAGCTTCTCTATTTCTGT
GTGATTCTTCTAATGGTTGTGGGTTTAGCAGCTGGCTATTTCATGTGGAT
GATGTCCTTCTCCACACATTCGCCGAACAAGGGCCTACACATACTCGATC
GCAGCGAATGGCTGGGGGAACCACCCAGTGGGAAGTACCCGCACCTTAAG
CTTCCCGTCTCCAATATTATCATTCATCACACGGCAACCGAAGGATGCGA
ACAAGAGGATGTTTGCATATACCGCATGAAGACCATTCAGGCGTTCCATA
TGAAATCTTTTGGTTGGGTCGACATTGGCTATAACTTTTTGGTGGGCGGC
GATGGTCAAATATACGTAGGACGCGGCTGGCACATCCAGGGTCAGCATGT
GAATGGATATGGTGCCATCTCCGTTAGCATAGCCTTTATCGGAACTTTTG
TGAATATGGAGCCACCAGCTCGACAAATCGAAGCAGCCAAGCGACTGATG
GACGAGGGCGTACGTCTCCATAGATTGCAACCGGATTATCATATATATGC
CCATCGACAATTAAGCCCCACCGAAAGTCCTGGCCAGAAGCTTTTCGAGC
TGATGCAAAATTGGCCCCGATTCACGCAGGATCCAACATCATTGCGACTC
CTAAGCAATGAGACTGTAAAGATCGTTACCCGACCCTATTGGTTGGCCCA
GCCACCTATAGTGCCACTTACTCCTTTGAAGCTGCCAATTGAGAGCGTGA
GATTTGTGGCAACCAACACGCCATCATGTTTCACTCAAGCCGAGTGCACT
TTTCGAGTGCGCCTTCTGCAAAATTGGCACATCGAGAGCAATGGATATAA
GGATATTAACTATAATTTCGTTGCGGCTGGGGACGAAAACATCTACGAGG
CCAGAGGTTGGGATCACAGCTGTGAACCTCCAAAAGATGCAGATGAACTA
GTCGTGGCCTTTATTGGTCCATCGAGTAGCAATAAAAAGATAGCATTAGA
ACTAATCAAACAGGGCATAAAACTTGGTCATATAAGCAAGAACTATAGTC
TAATTGACGATTTAGAAAAGTCATAGAAGCTTTCTAGACCAT

BS13001.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1110 CG4437-PA 1..1110 17..1126 5550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-RA 1355 CG4437-RA 78..1189 17..1128 5560 100 Plus
UGP-RE 2686 CG4347-RE 2230..2669 1128..689 2185 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9350884..9351323 689..1128 2185 99.8 Plus
3L 28110227 3L 9350442..9350828 306..692 1935 100 Plus
3L 28110227 3L 9349896..9350048 156..308 765 100 Plus
3L 28110227 3L 9349686..9349824 17..155 695 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:47:33 has no hits.

BS13001.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:52:45 Download gff for BS13001.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 76..1185 17..1126 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:39 Download gff for BS13001.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 78..1187 17..1126 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:25:07 Download gff for BS13001.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LF-RA 78..1187 17..1126 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:25:07 Download gff for BS13001.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9349686..9349824 17..155 100 -> Plus
3L 9349896..9350047 156..307 100 -> Plus
3L 9350444..9350828 308..692 100 -> Plus
3L 9350888..9351321 693..1126 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:39 Download gff for BS13001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9342786..9342924 17..155 100 -> Plus
arm_3L 9342996..9343147 156..307 100 -> Plus
arm_3L 9343544..9343928 308..692 100 -> Plus
arm_3L 9343988..9344421 693..1126 100   Plus

BS13001.pep Sequence

Translation from 16 to 1125

> BS13001.pep
MPKTVVVTHPGKPINNEKRFRFELLYFCVILLMVVGLAAGYFMWMMSFST
HSPNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVC
IYRMKTIQAFHMKSFGWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGA
ISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIYAHRQLS
PTESPGQKLFELMQNWPRFTQDPTSLRLLSNETVKIVTRPYWLAQPPIVP
LTPLKLPIESVRFVATNTPSCFTQAECTFRVRLLQNWHIESNGYKDINYN
FVAAGDENIYEARGWDHSCEPPKDADELVVAFIGPSSSNKKIALELIKQG
IKLGHISKNYSLIDDLEKS*

BS13001.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LF-PA 369 CG4437-PA 1..369 1..369 1988 100 Plus
PGRP-LC-PE 329 CG4432-PE 160..328 54..222 471 48.5 Plus
PGRP-LC-PD 500 CG4432-PD 331..499 54..222 471 48.5 Plus
PGRP-LC-PA 500 CG4432-PA 331..499 54..222 471 48.5 Plus
PGRP-LC-PC 511 CG4432-PC 343..494 65..216 383 44.7 Plus
PGRP-LC-PE 329 CG4432-PE 149..299 220..362 191 29.8 Plus
PGRP-LC-PD 500 CG4432-PD 320..470 220..362 191 29.8 Plus
PGRP-LC-PA 500 CG4432-PA 320..470 220..362 191 29.8 Plus