Clone Sequence Records
BS13002.3prime Sequence
741 bp (681 high quality bases) assembled on 2006-10-13
> BS13002.3prime
ATGGTCTAGAAAGCTTTCACAGATCTGTGGATATGGTGTGCGTGTGCCCG
GCTAGCAATTGGTAGGTGGTGTACATGGGCTCCTCCAGTGGTTCCTTCTC
GAAATCCACCTTGAACCTCTTGGCCGCACTCTCCATCTCCTCCAGGTCGC
TGAAGCCCGGAAAGCTGGTGGGGCAAAAGTGGCCGGCAATTGCCTCCGGA
ATGTGGGTGACATTGTGCAGCATGTGCGCTGGCGTGGATTGCAGATAGTT
TCTCCACTTCTGGTACGATGAGGGAGGCATCTGAGCATTATCCCTTCTTT
GGCAAATCGGCGACGAGGTCTTGGGCATAATGCGCTGCGCCTGCTGCATC
ATGTGCATCTCCCACTCCAGATTGCCCACCATTTGATCGGATTGTGTAGA
GTCTCGGGATGATGCACTCATGTCCTGCGTGCGCATAAGCACTCCCTCCA
TCTCCTCGTCATTCTCCTGGCCCTTTCTCGGCGATGAATTGGCGCTGCTG
CAGGTGTAGTAACCGCAGGATTTGTCCAGTTGTGGTTGCTCTGCGAAATC
ATCGCAAATCGGCTGGCTGGAGCGGCTCCAGATGCTGCGACTGGACGATG
AGGAGCTGCTGCTACCGCTGCTGCTACCGCTGCTGCTGCTGCCCACTCCG
CTGCTGTTGCGACTGCTGTACAAACGCTTCTGGGAGCGACTTGCCGATCC
GCCGGAGGCCACATAGATGCTGCTATTCAGGCTGCTCAGCT
BS13002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-PA | 759 | CG14427-RA | 35..759 | 741..17 | 3625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-RA | 1167 | CG14427-RA | 122..846 | 741..17 | 3625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7040724..7041448 | 741..17 | 3625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:15:24 has no hits.
BS13002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:58 Download gff for
BS13002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-PA | 35..759 | 17..741 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:15 Download gff for
BS13002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 122..849 | 13..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:49 Download gff for
BS13002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 122..849 | 13..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:49 Download gff for
BS13002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7040724..7041451 | 13..741 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:15 Download gff for
BS13002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6934757..6935484 | 13..741 | 99 | | Minus |
BS13002.5prime Sequence
789 bp (647 high quality bases) assembled on 2006-10-13
> BS13002.5prime
GAAGTTATCAGTCGACATGGGTTGTTGTGCAAGCAATCTGAAGCTCAAGG
AGCTGAGCAGCCTGAATAGCAGCATCTATGTGGCCTCCGGCGGATCGGCA
AGTCGCTCCCAGAAGCGTTTGTACAGCAGTCGCAACAGCAGCGGAGTGGG
CAGCAGCAGCAGCGGTAGCAGCAGCGGTAGCAGCAGCTCCTCATCGTCCA
GTCGCAGCATCTGGAGCCGCTCCAGCCAGCCGATTTGCGATGATTTCGCA
GAGCAACCACAACTGGACAAATCCTGCGGTTACTACACCTGCAGCAGCGC
CAATTCATCGCCGAGAAAGGGCCAGGAGAATGACGAGGAGATGGAGGGAG
TGCTTATGCGCACGCAGGACATGAGTGCATCATCCCGAGACTCTACACAA
TCCGATCAAATGGTGGGCAATCTGGAGTGGGAGATGCACATGATGCAGCA
GGCGCAGCGCATTATGCCCAAGACCTCGTCGCCGATTTGCCAAAGAAGGG
ATAATGCTCAGATGCCTCCCTCATCGTACCAGAAGTGGAGAAACTATCTG
CAATCCACGCCAGCGCACATGCTGCACAATGTCACCCACATTCCGGAGGC
AATTGCCGGCCACTTTTGCCCCACCAGCTTTCCGGGCTTCAGCGACCTGG
AGGAGATGGAGAGTGCGGCCAAGAGGTTCAAGGTGGATTTCGAGAANGAA
CCACTGGAGGAGCCCATGTACACCACCTACCAATTGCTAGCCGGGCACAC
GCACACCATATCCACAGATCTGTGAAAGCTTTCTAGACC
BS13002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-PA | 759 | CG14427-RA | 1..759 | 17..775 | 3776 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-RA | 1167 | CG14427-RA | 87..846 | 16..775 | 3789 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7040689..7041448 | 16..775 | 3789 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:37:38 has no hits.
BS13002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:59 Download gff for
BS13002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:37 Download gff for
BS13002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 87..849 | 16..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:52 Download gff for
BS13002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 87..849 | 16..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:52 Download gff for
BS13002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7040689..7041451 | 16..779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:37 Download gff for
BS13002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6934722..6935484 | 16..779 | 99 | | Plus |
BS13002.complete Sequence
791 bp assembled on 2006-11-01
GenBank Submission: FJ637350
> BS13002.complete
GAAGTTATCAGTCGACATGGGTTGTTGTGCAAGCAATCTGAAGCTCAAGG
AGCTGAGCAGCCTGAATAGCAGCATCTATGTGGCCTCCGGCGGATCGGCA
AGTCGCTCCCAGAAGCGTTTGTACAGCAGTCGCAACAGCAGCGGAGTGGG
CAGCAGCAGCAGCGGTAGCAGCAGCGGTAGCAGCAGCTCCTCATCGTCCA
GTCGCAGCATCTGGAGCCGCTCCAGCCAGCCGATTTGCGATGATTTCGCA
GAGCAACCACAACTGGACAAATCCTGCGGTTACTACACCTGCAGCAGCGC
CAATTCATCGCCGAGAAAGGGCCAGGAGAATGACGAGGAGATGGAGGGAG
TGCTTATGCGCACGCAGGACATGAGTGCATCATCCCGAGACTCTACACAA
TCCGATCAAATGGTGGGCAATCTGGAGTGGGAGATGCACATGATGCAGCA
GGCGCAGCGCATTATGCCCAAGACCTCGTCGCCGATTTGCCAAAGAAGGG
ATAATGCTCAGATGCCTCCCTCATCGTACCAGAAGTGGAGAAACTATCTG
CAATCCACGCCAGCGCACATGCTGCACAATGTCACCCACATTCCGGAGGC
AATTGCCGGCCACTTTTGCCCCACCAGCTTTCCGGGCTTCAGCGACCTGG
AGGAGATGGAGAGTGCGGCCAAGAGGTTCAAGGTGGATTTCGAGAAGGAA
CCACTGGAGGAGCCCATGTACACCACCTACCAATTGCTAGCCGGGCACAC
GCACACCATATCCACAGATCTGTGAAAGCTTTCTAGACCAT
BS13002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:43:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-RA | 759 | CG14427-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-RA | 1167 | CG14427-RA | 87..846 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7040689..7041448 | 16..775 | 3800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:43:08 has no hits.
BS13002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:58 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:02 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 82..844 | 16..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:40 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 88..845 | 17..774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:00 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 82..844 | 16..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:31 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14427-RA | 88..845 | 17..774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:31 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7040690..7041447 | 17..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:40 Download gff for
BS13002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6934723..6935480 | 17..774 | 100 | | Plus |
BS13002.pep Sequence
Translation from 16 to 774
> BS13002.pep
MGCCASNLKLKELSSLNSSIYVASGGSASRSQKRLYSSRNSSGVGSSSSG
SSSGSSSSSSSSRSIWSRSSQPICDDFAEQPQLDKSCGYYTCSSANSSPR
KGQENDEEMEGVLMRTQDMSASSRDSTQSDQMVGNLEWEMHMMQQAQRIM
PKTSSPICQRRDNAQMPPSSYQKWRNYLQSTPAHMLHNVTHIPEAIAGHF
CPTSFPGFSDLEEMESAAKRFKVDFEKEPLEEPMYTTYQLLAGHTHTIST
DL*
BS13002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14427-PA | 252 | CG14427-PA | 1..252 | 1..252 | 1315 | 100 | Plus |
