Clone BS13003 Report

Search the DGRC for BS13003

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG31145-RA
Protein status:BS13003.pep: full length peptide match
Sequenced Size:1619

Clone Sequence Records

BS13003.complete Sequence

1619 bp assembled on 2009-12-07

GenBank Submission: KX803066

> BS13003.complete
GAAGTTATCAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGC
GACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTT
ATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCA
GCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGG
GTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGC
AACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAG
TGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAG
CAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCA
CACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTC
GCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGC
TGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAG
CGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAGGACAC
TCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATG
TTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCA
AACGATATCAAGGCCTTAATGAAGCCGATGCGGTTTCCGCGGGAGCAGCA
AACGTTGCCCAACCACTTCTACTTCACGGACTATGAGCGCCACAACGCCG
AGATTGCCGCCTTCCACCTGGACAGGATCCTGGGATTCCGGCGTGCCATG
CCCGTTGCCGGTCGTACGCTGAACATTACGACCGAAATTTATCAACTGGC
CGAGGAGAATTTATTGAAGACGTTCTTTGTTTCGCCATCGCTGAATTTAT
GCTTCCATGGCAAGTGCTCGTACTATTGTGACACCTCGCATGCCATTTGC
GGCAATCCGGACATGTTGGAGGGCTCCTTCGCCGCCTTTCTGCCCAACTT
TGAGTCGGGCAATCGCAAGCTGTGGCGGCATCCCTGGCGACGGTCCTACC
ACAAAAGGAAGAAGGCCCAATGGGAGACAGATGCCAATTATTGTGCCCTG
GTCCGTGATATTCCGCCCTACGACGATGGAAGGCGACTGTACGACCTTAT
GGACATGGCCGTCTTTGATTTTCTCACTGGCAACATGGATCGTCATCATT
ACGAGACATTCAAGGTCTACGGCAACGAGACTTTCCCCCTGCATTTGGAC
CACGGCCGTGGTTTCGGGCGGCCCTTCCACGACGAGCTCTCCATCCTGGC
GCCGGTGCTGCAGTGCTGCCTGATACGCAAGTCGACGCTCGTCAAGCTGC
TAGACTTCCACAATGGTCCCAAGCCGCTGTCCCAGCTGATGAGCGAATCC
CTGAGCCAGGATCCCGTCAGTCCGGTGCTCTGGCAGCCGCACCTGGAGGC
GCTGGACCGCCGGACCGGCATCATCCTGCAAAGCATACGCGACTGCATAA
AGCGCAATCCGCCGGGCGACGTGGACGGATCCGAGACGGACGTCTCCTCG
TAGAAGCTTTCTAGACCAT

BS13003.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-RC 2943 CG31145-PC 1356..2943 16..1603 7940 100 Plus
CG31145-RF 1587 CG31145-PF 1..1587 17..1603 7935 100 Plus
CG31145-RB 1587 CG31145-PB 1..1587 17..1603 7935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-RF 3714 CG31145-RF 1027..2614 16..1603 7940 100 Plus
CG31145-RC 4524 CG31145-RC 1837..3424 16..1603 7940 100 Plus
CG31145-RB 2595 CG31145-RB 909..2496 16..1603 7940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23622371..23622651 528..248 1405 100 Minus
3R 32079331 3R 23611893..23612139 1069..823 1235 100 Minus
3R 32079331 3R 23626597..23626830 249..16 1170 100 Minus
3R 32079331 3R 23606851..23607049 1603..1405 995 100 Minus
3R 32079331 3R 23607525..23607665 1404..1264 705 100 Minus
3R 32079331 3R 23616198..23616325 653..526 640 100 Minus
3R 32079331 3R 23608368..23608482 1264..1150 575 100 Minus
3R 32079331 3R 23614376..23614470 826..732 475 100 Minus
3R 32079331 3R 23608717..23608801 1152..1068 425 100 Minus
3R 32079331 3R 23615126..23615207 734..653 410 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:53:22 has no hits.

BS13003.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:46 Download gff for BS13003.complete
Subject Subject Range Query Range Percent Splice Strand
CG31145-RC 1835..3421 17..1603 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:35 Download gff for BS13003.complete
Subject Subject Range Query Range Percent Splice Strand
CG31145-RB 910..2496 17..1603 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:32 Download gff for BS13003.complete
Subject Subject Range Query Range Percent Splice Strand
CG31145-RC 1835..3421 17..1603 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:14 Download gff for BS13003.complete
Subject Subject Range Query Range Percent Splice Strand
CG31145-RB 910..2496 17..1603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:14 Download gff for BS13003.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23606851..23607049 1405..1603 100 <- Minus
3R 23607525..23607665 1264..1404 100 <- Minus
3R 23608369..23608481 1151..1263 100 <- Minus
3R 23608719..23608799 1070..1150 100 <- Minus
3R 23611893..23612136 826..1069 100 <- Minus
3R 23614377..23614469 733..825 100 <- Minus
3R 23615128..23615206 654..732 100 <- Minus
3R 23616198..23616322 529..653 100 <- Minus
3R 23622371..23622649 250..528 100 <- Minus
3R 23626597..23626829 17..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:35 Download gff for BS13003.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19432573..19432771 1405..1603 100 <- Minus
arm_3R 19433247..19433387 1264..1404 100 <- Minus
arm_3R 19434091..19434203 1151..1263 100 <- Minus
arm_3R 19434441..19434521 1070..1150 100 <- Minus
arm_3R 19437615..19437858 826..1069 100 <- Minus
arm_3R 19440099..19440191 733..825 100 <- Minus
arm_3R 19440850..19440928 654..732 100 <- Minus
arm_3R 19441920..19442044 529..653 100 <- Minus
arm_3R 19448093..19448371 250..528 100 <- Minus
arm_3R 19452319..19452551 17..249 100   Minus

BS13003.3prime Sequence

665 bp (638 high quality bases) assembled on 2006-10-13

> BS13003.3prime
ATGGTCTAGAAAGCTTCTACGAGGAGACGTCCGTCTCGGATCCGTCCACG
TCGCCCGGCGGATTGCGCTTTATGCAGTCGCGTATGCTTTGCAGGATGAT
GCCGGTCCGGCGGTCCAGCGCCTCCAGGTGCGGCTGCCAGAGCACCGGAC
TGACGGGATCCTGGCTCAGGGATTCGCTCATCAGCTGGGACAGCGGCTTG
GGACCATTGTGGAAGTCTAGCAGCTTGACGAGCGTCGACTTGCGTATCAG
GCAGCACTGCAGCACCGGCGCCAGGATGGAGAGCTCGTCGTGGAAGGGCC
GCCCGAAACCACGGCCGTGGTCCAAATGCAGGGGGAAAGTCTCGTTGCCG
TAGACCTTGAATGTCTCGTAATGATGACGATCCATGTTGCCAGTGAGAAA
ATCAAAGACGGCCATGTCCATAAGGTCGTACAGTCGCCTTCCATCGTCGT
AGGGCGGAATATCACGGACCAGGGCACAATAATTGGCATCTGTCTCCCAT
TGGGCCTTCTTCCTTTTGTGGTAGGACCGTCGCCAGGGATGCCGCCACAG
CTTGCGATTGCCCGACTCAAAGTTGGGCAGAAAGGCGGCGAAGGAGCCCT
CCAACATGTCCGGATTGCCGCAAATGGCATGCGAGGTGTCACAATAGTAC
GAGCACTTGCCATGG

BS13003.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-PA 1587 CG31145-RA 939..1587 665..17 3245 100 Minus
CG31145-PB 1587 CG31145-RB 939..1587 665..17 3245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-RF 3714 CG31145-RF 1966..2614 665..17 3245 100 Minus
CG31145-RC 4524 CG31145-RC 2776..3424 665..17 3245 100 Minus
CG31145-RB 2595 CG31145-RB 1848..2496 665..17 3245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23606851..23607049 17..215 995 100 Plus
3R 32079331 3R 23607525..23607665 216..356 705 100 Plus
3R 32079331 3R 23608368..23608482 356..470 575 100 Plus
3R 32079331 3R 23611893..23612007 551..665 575 100 Plus
3R 32079331 3R 23608717..23608801 468..552 425 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:55:30 has no hits.

BS13003.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:59 Download gff for BS13003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31145-PB 939..1587 17..665 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:49 Download gff for BS13003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31145-RB 1848..2496 17..665 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:49 Download gff for BS13003.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31145-RB 1848..2496 17..665 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:49 Download gff for BS13003.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23606851..23607049 17..215 100 <- Plus
3R 23607525..23607665 216..356 100 <- Plus
3R 23608369..23608481 357..469 100 <- Plus
3R 23608719..23608799 470..550 100 <- Plus
3R 23611893..23612007 551..665 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:49 Download gff for BS13003.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19432573..19432771 17..215 100 <- Plus
arm_3R 19433247..19433387 216..356 100 <- Plus
arm_3R 19434091..19434203 357..469 100 <- Plus
arm_3R 19434441..19434521 470..550 100 <- Plus
arm_3R 19437615..19437729 551..665 100   Plus

BS13003.5prime Sequence

731 bp (709 high quality bases) assembled on 2006-10-13

> BS13003.5prime
GAAGTTATCAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGC
GACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTT
ATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCA
GCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGG
GTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGC
AACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAG
TGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAG
CAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCA
CACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTC
GCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGC
TGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAG
CGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAGGACAC
TCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATG
TTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCA
AACGATATCAAGGCCTTAATGAAGCCGATGC

BS13003.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:15:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-PA 1587 CG31145-RA 1..715 17..731 3575 100 Plus
CG31145-PB 1587 CG31145-RB 1..715 17..731 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-RF 3714 CG31145-RF 1027..1742 16..731 3580 100 Plus
CG31145-RD 3519 CG31145-RD 1837..2552 16..731 3580 100 Plus
CG31145-RC 4524 CG31145-RC 1837..2552 16..731 3580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23622371..23622651 528..248 1405 100 Minus
3R 32079331 3R 23626597..23626830 249..16 1170 100 Minus
3R 32079331 3R 23616198..23616325 653..526 640 100 Minus
3R 32079331 3R 23615129..23615207 731..653 395 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:05:44 has no hits.

BS13003.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:00 Download gff for BS13003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31145-PB 1..715 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:39 Download gff for BS13003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31145-RC 1828..2552 9..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:09 Download gff for BS13003.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31145-RC 1828..2552 9..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:09 Download gff for BS13003.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23626597..23626833 9..249 98   Minus
3R 23622371..23622649 250..528 100 <- Minus
3R 23616198..23616322 529..653 100 <- Minus
3R 23615129..23615206 654..731 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:39 Download gff for BS13003.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19440851..19440928 654..731 100 <- Minus
arm_3R 19441920..19442044 529..653 100 <- Minus
arm_3R 19448093..19448371 250..528 100 <- Minus
arm_3R 19452319..19452555 9..249 98   Minus

BS13003.pep Sequence

Translation from 16 to 1602

> BS13003.pep
MAVLRTMKLKERLVISLGATLVLLTLLLIVDVQMDFGVANRHLLQQQHQK
IRLGNDYDGGTGGGGMLHEFKRKFLQKSNASGSKEASTQAGASQSGGATS
GQDAAAGASGGAAGPGTSRSTSTRKPTPHDRYADLQKHLLSDEYSHVIVD
NAPDVSRDNPTLAEMLHRKASANASNLERFQLRITKKELYGEQDTLVDAV
LRDMIKLPIQHVVQKEGGTQLKLIIEYPNDIKALMKPMRFPREQQTLPNH
FYFTDYERHNAEIAAFHLDRILGFRRAMPVAGRTLNITTEIYQLAEENLL
KTFFVSPSLNLCFHGKCSYYCDTSHAICGNPDMLEGSFAAFLPNFESGNR
KLWRHPWRRSYHKRKKAQWETDANYCALVRDIPPYDDGRRLYDLMDMAVF
DFLTGNMDRHHYETFKVYGNETFPLHLDHGRGFGRPFHDELSILAPVLQC
CLIRKSTLVKLLDFHNGPKPLSQLMSESLSQDPVSPVLWQPHLEALDRRT
GIILQSIRDCIKRNPPGDVDGSETDVSS*

BS13003.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31145-PF 528 CG31145-PF 1..528 1..528 2786 100 Plus
CG31145-PC 980 CG31145-PC 453..980 1..528 2786 100 Plus
CG31145-PB 528 CG31145-PB 1..528 1..528 2786 100 Plus
CG31145-PA 528 CG31145-PA 1..528 1..528 2786 100 Plus
CG31145-PD 915 CG31145-PD 453..915 1..463 2439 99.8 Plus