Clone Sequence Records
BS13003.complete Sequence
1619 bp assembled on 2009-12-07
GenBank Submission: KX803066
> BS13003.complete
GAAGTTATCAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGC
GACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTT
ATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCA
GCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGG
GTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGC
AACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAG
TGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAG
CAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCA
CACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTC
GCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGC
TGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAG
CGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAGGACAC
TCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATG
TTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCA
AACGATATCAAGGCCTTAATGAAGCCGATGCGGTTTCCGCGGGAGCAGCA
AACGTTGCCCAACCACTTCTACTTCACGGACTATGAGCGCCACAACGCCG
AGATTGCCGCCTTCCACCTGGACAGGATCCTGGGATTCCGGCGTGCCATG
CCCGTTGCCGGTCGTACGCTGAACATTACGACCGAAATTTATCAACTGGC
CGAGGAGAATTTATTGAAGACGTTCTTTGTTTCGCCATCGCTGAATTTAT
GCTTCCATGGCAAGTGCTCGTACTATTGTGACACCTCGCATGCCATTTGC
GGCAATCCGGACATGTTGGAGGGCTCCTTCGCCGCCTTTCTGCCCAACTT
TGAGTCGGGCAATCGCAAGCTGTGGCGGCATCCCTGGCGACGGTCCTACC
ACAAAAGGAAGAAGGCCCAATGGGAGACAGATGCCAATTATTGTGCCCTG
GTCCGTGATATTCCGCCCTACGACGATGGAAGGCGACTGTACGACCTTAT
GGACATGGCCGTCTTTGATTTTCTCACTGGCAACATGGATCGTCATCATT
ACGAGACATTCAAGGTCTACGGCAACGAGACTTTCCCCCTGCATTTGGAC
CACGGCCGTGGTTTCGGGCGGCCCTTCCACGACGAGCTCTCCATCCTGGC
GCCGGTGCTGCAGTGCTGCCTGATACGCAAGTCGACGCTCGTCAAGCTGC
TAGACTTCCACAATGGTCCCAAGCCGCTGTCCCAGCTGATGAGCGAATCC
CTGAGCCAGGATCCCGTCAGTCCGGTGCTCTGGCAGCCGCACCTGGAGGC
GCTGGACCGCCGGACCGGCATCATCCTGCAAAGCATACGCGACTGCATAA
AGCGCAATCCGCCGGGCGACGTGGACGGATCCGAGACGGACGTCTCCTCG
TAGAAGCTTTCTAGACCAT
BS13003.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RC | 2943 | CG31145-PC | 1356..2943 | 16..1603 | 7940 | 100 | Plus |
CG31145-RF | 1587 | CG31145-PF | 1..1587 | 17..1603 | 7935 | 100 | Plus |
CG31145-RB | 1587 | CG31145-PB | 1..1587 | 17..1603 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RF | 3714 | CG31145-RF | 1027..2614 | 16..1603 | 7940 | 100 | Plus |
CG31145-RC | 4524 | CG31145-RC | 1837..3424 | 16..1603 | 7940 | 100 | Plus |
CG31145-RB | 2595 | CG31145-RB | 909..2496 | 16..1603 | 7940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23622371..23622651 | 528..248 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 23611893..23612139 | 1069..823 | 1235 | 100 | Minus |
3R | 32079331 | 3R | 23626597..23626830 | 249..16 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 23606851..23607049 | 1603..1405 | 995 | 100 | Minus |
3R | 32079331 | 3R | 23607525..23607665 | 1404..1264 | 705 | 100 | Minus |
3R | 32079331 | 3R | 23616198..23616325 | 653..526 | 640 | 100 | Minus |
3R | 32079331 | 3R | 23608368..23608482 | 1264..1150 | 575 | 100 | Minus |
3R | 32079331 | 3R | 23614376..23614470 | 826..732 | 475 | 100 | Minus |
3R | 32079331 | 3R | 23608717..23608801 | 1152..1068 | 425 | 100 | Minus |
3R | 32079331 | 3R | 23615126..23615207 | 734..653 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:53:22 has no hits.
BS13003.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:46 Download gff for
BS13003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1835..3421 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:35 Download gff for
BS13003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 910..2496 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:32 Download gff for
BS13003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1835..3421 | 17..1603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:14 Download gff for
BS13003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 910..2496 | 17..1603 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:14 Download gff for
BS13003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23606851..23607049 | 1405..1603 | 100 | <- | Minus |
3R | 23607525..23607665 | 1264..1404 | 100 | <- | Minus |
3R | 23608369..23608481 | 1151..1263 | 100 | <- | Minus |
3R | 23608719..23608799 | 1070..1150 | 100 | <- | Minus |
3R | 23611893..23612136 | 826..1069 | 100 | <- | Minus |
3R | 23614377..23614469 | 733..825 | 100 | <- | Minus |
3R | 23615128..23615206 | 654..732 | 100 | <- | Minus |
3R | 23616198..23616322 | 529..653 | 100 | <- | Minus |
3R | 23622371..23622649 | 250..528 | 100 | <- | Minus |
3R | 23626597..23626829 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:35 Download gff for
BS13003.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19432573..19432771 | 1405..1603 | 100 | <- | Minus |
arm_3R | 19433247..19433387 | 1264..1404 | 100 | <- | Minus |
arm_3R | 19434091..19434203 | 1151..1263 | 100 | <- | Minus |
arm_3R | 19434441..19434521 | 1070..1150 | 100 | <- | Minus |
arm_3R | 19437615..19437858 | 826..1069 | 100 | <- | Minus |
arm_3R | 19440099..19440191 | 733..825 | 100 | <- | Minus |
arm_3R | 19440850..19440928 | 654..732 | 100 | <- | Minus |
arm_3R | 19441920..19442044 | 529..653 | 100 | <- | Minus |
arm_3R | 19448093..19448371 | 250..528 | 100 | <- | Minus |
arm_3R | 19452319..19452551 | 17..249 | 100 | | Minus |
BS13003.3prime Sequence
665 bp (638 high quality bases) assembled on 2006-10-13
> BS13003.3prime
ATGGTCTAGAAAGCTTCTACGAGGAGACGTCCGTCTCGGATCCGTCCACG
TCGCCCGGCGGATTGCGCTTTATGCAGTCGCGTATGCTTTGCAGGATGAT
GCCGGTCCGGCGGTCCAGCGCCTCCAGGTGCGGCTGCCAGAGCACCGGAC
TGACGGGATCCTGGCTCAGGGATTCGCTCATCAGCTGGGACAGCGGCTTG
GGACCATTGTGGAAGTCTAGCAGCTTGACGAGCGTCGACTTGCGTATCAG
GCAGCACTGCAGCACCGGCGCCAGGATGGAGAGCTCGTCGTGGAAGGGCC
GCCCGAAACCACGGCCGTGGTCCAAATGCAGGGGGAAAGTCTCGTTGCCG
TAGACCTTGAATGTCTCGTAATGATGACGATCCATGTTGCCAGTGAGAAA
ATCAAAGACGGCCATGTCCATAAGGTCGTACAGTCGCCTTCCATCGTCGT
AGGGCGGAATATCACGGACCAGGGCACAATAATTGGCATCTGTCTCCCAT
TGGGCCTTCTTCCTTTTGTGGTAGGACCGTCGCCAGGGATGCCGCCACAG
CTTGCGATTGCCCGACTCAAAGTTGGGCAGAAAGGCGGCGAAGGAGCCCT
CCAACATGTCCGGATTGCCGCAAATGGCATGCGAGGTGTCACAATAGTAC
GAGCACTTGCCATGG
BS13003.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-PA | 1587 | CG31145-RA | 939..1587 | 665..17 | 3245 | 100 | Minus |
CG31145-PB | 1587 | CG31145-RB | 939..1587 | 665..17 | 3245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RF | 3714 | CG31145-RF | 1966..2614 | 665..17 | 3245 | 100 | Minus |
CG31145-RC | 4524 | CG31145-RC | 2776..3424 | 665..17 | 3245 | 100 | Minus |
CG31145-RB | 2595 | CG31145-RB | 1848..2496 | 665..17 | 3245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:55:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23606851..23607049 | 17..215 | 995 | 100 | Plus |
3R | 32079331 | 3R | 23607525..23607665 | 216..356 | 705 | 100 | Plus |
3R | 32079331 | 3R | 23608368..23608482 | 356..470 | 575 | 100 | Plus |
3R | 32079331 | 3R | 23611893..23612007 | 551..665 | 575 | 100 | Plus |
3R | 32079331 | 3R | 23608717..23608801 | 468..552 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:55:30 has no hits.
BS13003.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:35:59 Download gff for
BS13003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-PB | 939..1587 | 17..665 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:39:49 Download gff for
BS13003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 1848..2496 | 17..665 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:17:49 Download gff for
BS13003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RB | 1848..2496 | 17..665 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:17:49 Download gff for
BS13003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23606851..23607049 | 17..215 | 100 | <- | Plus |
3R | 23607525..23607665 | 216..356 | 100 | <- | Plus |
3R | 23608369..23608481 | 357..469 | 100 | <- | Plus |
3R | 23608719..23608799 | 470..550 | 100 | <- | Plus |
3R | 23611893..23612007 | 551..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:39:49 Download gff for
BS13003.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19432573..19432771 | 17..215 | 100 | <- | Plus |
arm_3R | 19433247..19433387 | 216..356 | 100 | <- | Plus |
arm_3R | 19434091..19434203 | 357..469 | 100 | <- | Plus |
arm_3R | 19434441..19434521 | 470..550 | 100 | <- | Plus |
arm_3R | 19437615..19437729 | 551..665 | 100 | | Plus |
BS13003.5prime Sequence
731 bp (709 high quality bases) assembled on 2006-10-13
> BS13003.5prime
GAAGTTATCAGTCGACATGGCCGTCCTGCGTACTATGAAATTAAAGGAGC
GACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTTCTGCTT
ATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCTCCTTCA
GCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTGGCACGG
GTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAGAAGAGC
AACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAGCCAGAG
TGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGGGCGGAG
CAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCCACACCA
CACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGAGTACTC
GCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATCCCACGC
TGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAATTTGGAG
CGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCAGGACAC
TCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATACAGCATG
TTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAGTACCCA
AACGATATCAAGGCCTTAATGAAGCCGATGC
BS13003.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-PA | 1587 | CG31145-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
CG31145-PB | 1587 | CG31145-RB | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-RF | 3714 | CG31145-RF | 1027..1742 | 16..731 | 3580 | 100 | Plus |
CG31145-RD | 3519 | CG31145-RD | 1837..2552 | 16..731 | 3580 | 100 | Plus |
CG31145-RC | 4524 | CG31145-RC | 1837..2552 | 16..731 | 3580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23622371..23622651 | 528..248 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 23626597..23626830 | 249..16 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 23616198..23616325 | 653..526 | 640 | 100 | Minus |
3R | 32079331 | 3R | 23615129..23615207 | 731..653 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:05:44 has no hits.
BS13003.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:00 Download gff for
BS13003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-PB | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:33:39 Download gff for
BS13003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1828..2552 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:09 Download gff for
BS13003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31145-RC | 1828..2552 | 9..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:09 Download gff for
BS13003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23626597..23626833 | 9..249 | 98 | | Minus |
3R | 23622371..23622649 | 250..528 | 100 | <- | Minus |
3R | 23616198..23616322 | 529..653 | 100 | <- | Minus |
3R | 23615129..23615206 | 654..731 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:33:39 Download gff for
BS13003.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19440851..19440928 | 654..731 | 100 | <- | Minus |
arm_3R | 19441920..19442044 | 529..653 | 100 | <- | Minus |
arm_3R | 19448093..19448371 | 250..528 | 100 | <- | Minus |
arm_3R | 19452319..19452555 | 9..249 | 98 | | Minus |
BS13003.pep Sequence
Translation from 16 to 1602
> BS13003.pep
MAVLRTMKLKERLVISLGATLVLLTLLLIVDVQMDFGVANRHLLQQQHQK
IRLGNDYDGGTGGGGMLHEFKRKFLQKSNASGSKEASTQAGASQSGGATS
GQDAAAGASGGAAGPGTSRSTSTRKPTPHDRYADLQKHLLSDEYSHVIVD
NAPDVSRDNPTLAEMLHRKASANASNLERFQLRITKKELYGEQDTLVDAV
LRDMIKLPIQHVVQKEGGTQLKLIIEYPNDIKALMKPMRFPREQQTLPNH
FYFTDYERHNAEIAAFHLDRILGFRRAMPVAGRTLNITTEIYQLAEENLL
KTFFVSPSLNLCFHGKCSYYCDTSHAICGNPDMLEGSFAAFLPNFESGNR
KLWRHPWRRSYHKRKKAQWETDANYCALVRDIPPYDDGRRLYDLMDMAVF
DFLTGNMDRHHYETFKVYGNETFPLHLDHGRGFGRPFHDELSILAPVLQC
CLIRKSTLVKLLDFHNGPKPLSQLMSESLSQDPVSPVLWQPHLEALDRRT
GIILQSIRDCIKRNPPGDVDGSETDVSS*
BS13003.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31145-PF | 528 | CG31145-PF | 1..528 | 1..528 | 2786 | 100 | Plus |
CG31145-PC | 980 | CG31145-PC | 453..980 | 1..528 | 2786 | 100 | Plus |
CG31145-PB | 528 | CG31145-PB | 1..528 | 1..528 | 2786 | 100 | Plus |
CG31145-PA | 528 | CG31145-PA | 1..528 | 1..528 | 2786 | 100 | Plus |
CG31145-PD | 915 | CG31145-PD | 453..915 | 1..463 | 2439 | 99.8 | Plus |