Clone Sequence Records
BS13004.3prime Sequence
698 bp (631 high quality bases) assembled on 2006-10-13
> BS13004.3prime
ATGGTCTAGAAAGCTTTTAAGCCGACTTCACATTGTAGTAGCTGTAGACG
TAGGGCCAGGAGGCCAGCACGTACTCCTCGATGCCGCACTCGTTGGAGCC
TCGTAGGATGCGGAAGTAGCCATGCTCGCCCCACCAAGATCCCCACGAGT
TCGCTGCGATCCAATACTTTTCACCATTGTGCTCCTCTCCCCAGCCCACC
AACTTCACCGAGTGGAACCCAGTTGGCGCCTTTCGGTTGGCTGCTGTCTC
GCGGTACACACCGCCTGAGTAGGCGAAGAAGTCCCTGTTAACCCGCATGG
TGGCCTGTACGGGACCGGAGTGGAAGATCTCGGCCATAATGTCGGCTTCC
CGGTTCAAGCTGTAGGCCGGACCCACCGTGTAGAGGGAGTCCCTGTCCAC
ATTGACCGGCTTTTGGCATCCATTGGCCCTCAGAGAGCGACTGTTGTGGC
GGATCTTGCAGGTGTCGCGGTGCTGTGTGTACGGATAGCAGTTCTCGTCG
ACCACGCCCTTCTTGTGCAAGTAGCGCCAGGCGGCGTCCAAGTGGCCACC
CTCGCAGCCCTGCTGGCGGCGTGTGCAGGAGAGGATGTTCTGGGCGGACA
GCTGGACATTCTCCTTGCCCTTGCTCTGGATGGCGAAGCGATCGCTGGCC
ACCGAGGTGGTGGACAGCACCCATGAGGCACCGCACCAGCCCTGGTCG
BS13004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3074-PB | 1296 | CG3074-RB | 615..1296 | 698..17 | 3410 | 100 | Minus |
| CG3074-PA | 1296 | CG3074-RA | 615..1296 | 698..17 | 3410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-RA | 1989 | CG3074-RA | 765..1446 | 698..17 | 3410 | 100 | Minus |
| Swim-RB | 2049 | CG3074-RB | 825..1506 | 698..17 | 3410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22190582..22191119 | 161..698 | 2690 | 100 | Plus |
| 2R | 25286936 | 2R | 22190360..22190504 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:40:33 has no hits.
BS13004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:00 Download gff for
BS13004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-PA | 615..1296 | 17..698 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:29 Download gff for
BS13004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 825..1506 | 17..698 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:57 Download gff for
BS13004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 825..1506 | 17..698 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:57 Download gff for
BS13004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22190360..22190503 | 17..160 | 100 | <- | Plus |
| 2R | 22190582..22191119 | 161..698 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:29 Download gff for
BS13004.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18077865..18078008 | 17..160 | 100 | <- | Plus |
| arm_2R | 18078087..18078624 | 161..698 | 100 | | Plus |
BS13004.5prime Sequence
819 bp (698 high quality bases) assembled on 2006-10-13
> BS13004.5prime
GAAGTTATCAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTC
TGGTCCTGCTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAA
AGGGACTTCCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGA
TCGGCACGACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCG
ATGAGTTCTGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGC
TCCTTCTGCATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGG
CGTCTACTTCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCC
GCTGCCTGGAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACC
GACGACGCGATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTC
TGCCCGCAAGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAA
AGCTGCGTCTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACG
CGTCTAAAGAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGA
CAAGTGGTCCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTG
CCTCATGGGTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATC
CAGAGCAAGGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTC
CTGCACACGCCGCCAGCAAGGCTGCGAGGGTGGCCACTTGGACGCCGCCT
GGCGCTACCTGCACAAGAA
BS13004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3074-PB | 1296 | CG3074-RB | 1..803 | 17..819 | 3965 | 99.7 | Plus |
| CG3074-PA | 1296 | CG3074-RA | 1..803 | 17..819 | 3965 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-RA | 1989 | CG3074-RA | 150..953 | 16..819 | 3990 | 99.8 | Plus |
| Swim-RB | 2049 | CG3074-RB | 210..1013 | 16..819 | 3990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:51:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22190931..22191567 | 819..183 | 3155 | 99.7 | Minus |
| 2R | 25286936 | 2R | 22191662..22191828 | 182..16 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:51:53 has no hits.
BS13004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:01 Download gff for
BS13004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:36 Download gff for
BS13004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 205..1013 | 10..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:09 Download gff for
BS13004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 205..1013 | 10..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:09 Download gff for
BS13004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22190931..22191567 | 183..819 | 99 | <- | Minus |
| 2R | 22191662..22191831 | 10..182 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:36 Download gff for
BS13004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18078436..18079072 | 183..819 | 99 | <- | Minus |
| arm_2R | 18079167..18079336 | 10..182 | 98 | | Minus |
BS13004.complete Sequence
1328 bp assembled on 2006-11-01
GenBank Submission: FJ637351
> BS13004.complete
GAAGTTATCAGTCGACATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTC
TGGTCCTGCTAATGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAA
AGGGACTTCCCAGGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGA
TCGGCACGACGGCTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCG
ATGAGTTCTGCGATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGC
TCCTTCTGCATCGGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGG
CGTCTACTTCAGCAAGTACAATACCACGTGGGACAACTGCAACGAGTGCC
GCTGCCTGGAGGGCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACC
GACGACGCGATTGTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTC
TGCCCGCAAGTATGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAA
AGCTGCGTCTGGGCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACG
CGTCTAAAGAATCCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGA
CAAGTGGTCCAGCTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTG
CCTCATGGGTGCTGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATC
CAGAGCAAGGGCAAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTC
CTGCACACGCCGCCAGCAGGGCTGCGAGGGTGGCCACTTGGACGCCGCCT
GGCGCTACTTGCACAAGAAGGGCGTGGTCGACGAGAACTGCTATCCGTAC
ACACAGCACCGCGACACCTGCAAGATCCGCCACAACAGTCGCTCTCTGAG
GGCCAATGGATGCCAAAAGCCGGTCAATGTGGACAGGGACTCCCTCTACA
CGGTGGGTCCGGCCTACAGCTTGAACCGGGAAGCCGACATTATGGCCGAG
ATCTTCCACTCCGGTCCCGTACAGGCCACCATGCGGGTTAACAGGGACTT
CTTCGCCTACTCAGGCGGTGTGTACCGCGAGACAGCAGCCAACCGAAAGG
CGCCAACTGGGTTCCACTCGGTGAAGTTGGTGGGCTGGGGAGAGGAGCAC
AATGGTGAAAAGTATTGGATCGCAGCGAACTCGTGGGGATCTTGGTGGGG
CGAGCATGGCTACTTCCGCATCCTACGAGGCTCCAACGAGTGCGGCATCG
AGGAGTACGTGCTGGCCTCCTGGCCCTACGTCTACAGCTACTACAATGTG
AAGTCGGCTTAAAAGCTTTCTAGACCAT
BS13004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-RA | 1296 | CG3074-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
| Swim-RB | 1296 | CG3074-PB | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-RA | 1989 | CG3074-RA | 150..1446 | 16..1312 | 6485 | 100 | Plus |
| Swim-RB | 2049 | CG3074-RB | 210..1506 | 16..1312 | 6485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22190582..22191567 | 1168..183 | 4930 | 100 | Minus |
| 2R | 25286936 | 2R | 22191662..22191828 | 182..16 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 22190360..22190504 | 1312..1168 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:23:01 has no hits.
BS13004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:01 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-RA | 1..1296 | 17..1312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:03 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-RA | 146..1447 | 10..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:32 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 211..1504 | 17..1310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:01 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-RA | 146..1447 | 10..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:12 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 211..1504 | 17..1310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:12 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22191662..22191827 | 17..182 | 100 | | Minus |
| 2R | 22190362..22190503 | 1169..1310 | 100 | <- | Minus |
| 2R | 22190582..22191567 | 183..1168 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:32 Download gff for
BS13004.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18077867..18078008 | 1169..1310 | 100 | <- | Minus |
| arm_2R | 18078087..18079072 | 183..1168 | 100 | <- | Minus |
| arm_2R | 18079167..18079332 | 17..182 | 100 | | Minus |
BS13004.pep Sequence
Translation from 16 to 1311
> BS13004.pep
MSIKCVHLVGLLVLLMGGANALFDHTLKRDFPGPYCARENTCCKDRHDGC
SVPISNTLCYCDEFCDRDDSSDCCPDYRSFCIGEVDPIISCEHNGVYFSK
YNTTWDNCNECRCLEGGSVQCDEDLCLTDDAIVHSVNSIHRLGWSARKYD
QWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKNPTDGLPSSFNALDKWSSY
ISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRRQ
QGCEGGHLDAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQ
KPVNVDRDSLYTVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSG
GVYRETAANRKAPTGFHSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYF
RILRGSNECGIEEYVLASWPYVYSYYNVKSA*
BS13004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-PA | 431 | CG3074-PA | 1..431 | 1..431 | 2415 | 100 | Plus |
| Swim-PB | 431 | CG3074-PB | 1..431 | 1..431 | 2415 | 100 | Plus |
| CtsB1-PC | 340 | CG10992-PC | 82..338 | 182..420 | 366 | 35.2 | Plus |
| CtsB1-PA | 340 | CG10992-PA | 82..338 | 182..420 | 366 | 35.2 | Plus |
| CG4847-PE | 390 | CG4847-PE | 139..390 | 157..422 | 287 | 30.9 | Plus |
