Clone BS13006 Report

Search the DGRC for BS13006

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG4860-RA
Protein status:BS13006.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13006.3prime Sequence

674 bp (667 high quality bases) assembled on 2006-10-13

> BS13006.3prime
ATGGTCTAGAAAGCTTTCACTCCTTTCCCAATTCCCGCAGCACTGCGTTG
GCGATCACAATTCTTTGGATCTCCGAGGTTCCCTCGTAAATCTCTGTGAC
GCGGGCGTTGCGGTAGTAAAGCTCCGCAGGCAGATCGGTGGTGTACCCCA
TCCCACCCAGGATCTGGATGCACTGGTGGGCACAAAAGGTGGCGGACTCG
GAGGCATGCAGCTTGGCCATGGCCGCCTCCTTTGTGATTGGCAGCCCATT
ATCCTTCAGCCAAGCGGCACGCCACGTTAGCAGCCTTGAGATCTCCACCC
GCGTGGCCATGTCGGCCAGCTTCTGCTGGATGAGCTGCAACCGTGCCAGA
TGCTTTCCGAAGGCCACCCTCTTCTGCGAATAATCCACGGCTAGTTCCAG
GGCAGCTTGTGCGATACCGGTGGCCTGGGCGGCTATACCGATCCTGCCAC
AGTCCAAGGACTGCATGGCGATCTTGAAGCCATCACCGGCAGCTCCAAGG
ACCCGGGATCGCGGCACGTGAACGTCCTCCAGCACCAGCTGGCAAGTCGA
AGTCGCGCGCATGCCCATTTTGCTTTCCTTCTTGGCTATGGAGAGTCCTG
GAACATCCTTGGGCGTAAGAAAGGCAGTGATTCCCTTGTGTTTCATGCTC
TTGTCCACCGTGGCAAAAGACGAT

BS13006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 1248 CG4860-RA 598..1248 667..17 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1393 CG4860-RA 606..1266 674..13 3285 99.8 Minus
Arc42-RA 1418 CG4703-RA 901..1328 478..51 370 72.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12220008..12220662 13..667 3275 100 Plus
3R 32079331 3R 19878792..19879219 478..51 370 72.4 Minus
Blast to na_te.dros performed on 2015-02-08 12:15:46 has no hits.

BS13006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:01 Download gff for BS13006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-PA 592..1248 17..674 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:17 Download gff for BS13006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 606..1266 13..674 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:54 Download gff for BS13006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 606..1266 13..674 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:54 Download gff for BS13006.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12220008..12220668 13..674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:17 Download gff for BS13006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8045730..8046390 13..674 99   Plus

BS13006.5prime Sequence

739 bp (671 high quality bases) assembled on 2006-10-13

> BS13006.5prime
GAAGTTATCAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACGCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
GTGCAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTA
CACCCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACG
GATCGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGC
TACCAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAG
CGGGGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAA
TCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAACCAAG
AAGGAAAGCAAAATGGGCATTGCGCGCGACTTCGACTTG

BS13006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 1248 CG4860-RA 1..704 17..720 3470 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1393 CG4860-RA 15..736 17..739 3560 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12220538..12220986 739..290 2185 99.6 Minus
3R 32079331 3R 12221113..12221356 293..50 1205 99.6 Minus
3R 32079331 3R 12221415..12221450 52..17 180 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:37:50 has no hits.

BS13006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:02 Download gff for BS13006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-PA 1..722 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:38 Download gff for BS13006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 13..736 14..739 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:54 Download gff for BS13006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 13..736 14..739 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:54 Download gff for BS13006.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12220538..12220985 291..739 99 <- Minus
3R 12221116..12221355 51..290 99 <- Minus
3R 12221417..12221452 14..50 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:38 Download gff for BS13006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8046260..8046707 291..739 99 <- Minus
arm_3R 8046838..8047077 51..290 99 <- Minus
arm_3R 8047139..8047174 14..50 97   Minus

BS13006.complete Sequence

1280 bp assembled on 2006-11-01

GenBank Submission: FJ637352

> BS13006.complete
GAAGTTATCAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACGCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
GTGCAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTA
CACCCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACG
GATCGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGC
TACCAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAG
CGGGGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAA
TCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAG
AAGGAAAGCAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCT
GGAGGACGTTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATG
GCTTCAAGATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCC
GCCCAGGCCACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTA
TTCGCAGAAGAGGGTGGCCTTCGGAAAGCATCTGGCACGGTTGCAGCTCA
TCCAGCAGAAGCTGGCCGACATGGCCACGCGGGTGGAGATCTCAAGGCTG
CTAACGTGGCGTGCCGCTTGGCTGAAGGATAATGGGCTGCCAATCACAAA
GGAGGCGGCCATGGCCAAGCTGCATGCCTCCGAGTCCGCCACCTTTTGTG
CCCACCAGTGCATCCAGATCCTGGGTGGGATGGGGTACACCACCGATCTG
CCTGCGGAGCTTTACTACCGCAACGCCCGCGTCACAGAGATTTACGAGGG
AACCTCGGAGATCCAAAGAATTGTGATCGCCAACGCAGTGCTGCGGGAAT
TGGGAAAGGAGTGAAAGCTTTCTAGACCAT

BS13006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1248 CG4860-PA 1..1248 17..1264 6225 99.9 Plus
Arc42-RA 1218 CG4703-PA 760..1187 803..1230 370 72.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-RA 1393 CG4860-RA 15..1266 17..1268 6245 99.9 Plus
Arc42-RA 1418 CG4703-RA 901..1328 803..1230 370 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12220008..12220986 1268..290 4895 100 Minus
3R 32079331 3R 12221113..12221356 293..50 1205 99.6 Minus
3R 32079331 3R 19878792..19879219 803..1230 370 72.4 Plus
Blast to na_te.dros performed on 2014-11-27 01:41:18 has no hits.

BS13006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:02 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 1..1248 17..1264 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:05 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 12..1265 14..1268 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:40 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 15..1261 17..1263 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:03 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 12..1265 14..1268 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:03 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
CG4860-RA 15..1261 17..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:03 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12220013..12220985 291..1263 100 <- Minus
3R 12221116..12221355 51..290 99 <- Minus
3R 12221417..12221450 17..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:40 Download gff for BS13006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8045735..8046707 291..1263 100 <- Minus
arm_3R 8046838..8047077 51..290 99 <- Minus
arm_3R 8047139..8047172 17..50 100   Minus

BS13006.pep Sequence

Translation from 16 to 1263

> BS13006.pep
MQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQKTCRE
FANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQA
YAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEH
IAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASGGIVF
ATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHV
PRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRV
AFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMA
KLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQ
RIVIANAVLRELGKE*

BS13006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG4860-PA 415 CG4860-PA 1..415 1..415 2101 100 Plus
Arc42-PA 405 CG4703-PA 19..402 29..411 1284 64.1 Plus
CG3902-PA 414 CG3902-PA 34..411 34..411 698 37.5 Plus
CG12262-PA 419 CG12262-PA 36..408 36..405 605 37.5 Plus
CG6638-PA 420 CG6638-PA 39..418 37..411 589 37 Plus