Clone Sequence Records
BS13006.3prime Sequence
674 bp (667 high quality bases) assembled on 2006-10-13
> BS13006.3prime
ATGGTCTAGAAAGCTTTCACTCCTTTCCCAATTCCCGCAGCACTGCGTTG
GCGATCACAATTCTTTGGATCTCCGAGGTTCCCTCGTAAATCTCTGTGAC
GCGGGCGTTGCGGTAGTAAAGCTCCGCAGGCAGATCGGTGGTGTACCCCA
TCCCACCCAGGATCTGGATGCACTGGTGGGCACAAAAGGTGGCGGACTCG
GAGGCATGCAGCTTGGCCATGGCCGCCTCCTTTGTGATTGGCAGCCCATT
ATCCTTCAGCCAAGCGGCACGCCACGTTAGCAGCCTTGAGATCTCCACCC
GCGTGGCCATGTCGGCCAGCTTCTGCTGGATGAGCTGCAACCGTGCCAGA
TGCTTTCCGAAGGCCACCCTCTTCTGCGAATAATCCACGGCTAGTTCCAG
GGCAGCTTGTGCGATACCGGTGGCCTGGGCGGCTATACCGATCCTGCCAC
AGTCCAAGGACTGCATGGCGATCTTGAAGCCATCACCGGCAGCTCCAAGG
ACCCGGGATCGCGGCACGTGAACGTCCTCCAGCACCAGCTGGCAAGTCGA
AGTCGCGCGCATGCCCATTTTGCTTTCCTTCTTGGCTATGGAGAGTCCTG
GAACATCCTTGGGCGTAAGAAAGGCAGTGATTCCCTTGTGTTTCATGCTC
TTGTCCACCGTGGCAAAAGACGAT
BS13006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-PA | 1248 | CG4860-RA | 598..1248 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1393 | CG4860-RA | 606..1266 | 674..13 | 3285 | 99.8 | Minus |
Arc42-RA | 1418 | CG4703-RA | 901..1328 | 478..51 | 370 | 72.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12220008..12220662 | 13..667 | 3275 | 100 | Plus |
3R | 32079331 | 3R | 19878792..19879219 | 478..51 | 370 | 72.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:15:46 has no hits.
BS13006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:01 Download gff for
BS13006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-PA | 592..1248 | 17..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:17 Download gff for
BS13006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 606..1266 | 13..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:54 Download gff for
BS13006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 606..1266 | 13..674 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:54 Download gff for
BS13006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12220008..12220668 | 13..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:17 Download gff for
BS13006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8045730..8046390 | 13..674 | 99 | | Plus |
BS13006.5prime Sequence
739 bp (671 high quality bases) assembled on 2006-10-13
> BS13006.5prime
GAAGTTATCAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACGCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
GTGCAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTA
CACCCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACG
GATCGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGC
TACCAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAG
CGGGGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAA
TCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAACCAAG
AAGGAAAGCAAAATGGGCATTGCGCGCGACTTCGACTTG
BS13006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-PA | 1248 | CG4860-RA | 1..704 | 17..720 | 3470 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1393 | CG4860-RA | 15..736 | 17..739 | 3560 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12220538..12220986 | 739..290 | 2185 | 99.6 | Minus |
3R | 32079331 | 3R | 12221113..12221356 | 293..50 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 12221415..12221450 | 52..17 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:37:50 has no hits.
BS13006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:02 Download gff for
BS13006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-PA | 1..722 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:38 Download gff for
BS13006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 13..736 | 14..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:54 Download gff for
BS13006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 13..736 | 14..739 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:54 Download gff for
BS13006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12220538..12220985 | 291..739 | 99 | <- | Minus |
3R | 12221116..12221355 | 51..290 | 99 | <- | Minus |
3R | 12221417..12221452 | 14..50 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:38 Download gff for
BS13006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8046260..8046707 | 291..739 | 99 | <- | Minus |
arm_3R | 8046838..8047077 | 51..290 | 99 | <- | Minus |
arm_3R | 8047139..8047174 | 14..50 | 97 | | Minus |
BS13006.complete Sequence
1280 bp assembled on 2006-11-01
GenBank Submission: FJ637352
> BS13006.complete
GAAGTTATCAGTCGACATGCAGCAGCTGATCAGAGTGGCGCGGACGTTGG
GTCAACGCTCGAGCGGCGCATGGAGTGCGAGGATAATCGCTGGTGGAAAC
CGGGGAATCGCATGCCTGGCCGCCCTCTCCGAGACCCATCAGATTCTCCA
GAAGACTTGCCGGGAGTTCGCCAATGCGGAACTGGCCCCCAAAGCGCGAC
ACCACGACCGGGAGGAGCTTTATCCGGCGGAACAGGTCCGACGGTTGGGA
GAACTCGGTCTCATGTCAGTGACGGTTCGAGAGGAGTATGGTGGTTCCGG
ATTGGATTACCAGGCCTACGCGATTGGCATGGAGGAGGTGGCTCGTGGTG
ACGCCGCCGTGTCCATTGTGATGGGCGTGAATAACCTGTACCTGGGTGCA
GTGCAGCAGCATGGAACCGAGCAGCAGAAGCAGGATTTCCTGGTGCCGTA
CACCCAGGGTGAGCACATCGCCTTCTATGCACTATCGGAACCTGGAAACG
GATCGGATGCAGGAGCTGCCAGCACCACGGCCAAGCTGCAAGGGGACAGC
TACCAAATAAACGGCACTAAAGCGTGGATATCAAACTCCAAGGAGGCCAG
CGGGGGTATCGTCTTTGCCACGGTGGACAAGAGCATGAAACACAAGGGAA
TCACTGCCTTTCTTACGCCCAAGGATGTTCCAGGACTCTCCATAGCCAAG
AAGGAAAGCAAAATGGGCATGCGCGCGACTTCGACTTGCCAGCTGGTGCT
GGAGGACGTTCACGTGCCGCGATCCCGGGTCCTTGGAGCTGCCGGTGATG
GCTTCAAGATCGCCATGCAGTCCTTGGACTGTGGCAGGATCGGTATAGCC
GCCCAGGCCACCGGTATCGCACAAGCTGCCCTGGAACTAGCCGTGGATTA
TTCGCAGAAGAGGGTGGCCTTCGGAAAGCATCTGGCACGGTTGCAGCTCA
TCCAGCAGAAGCTGGCCGACATGGCCACGCGGGTGGAGATCTCAAGGCTG
CTAACGTGGCGTGCCGCTTGGCTGAAGGATAATGGGCTGCCAATCACAAA
GGAGGCGGCCATGGCCAAGCTGCATGCCTCCGAGTCCGCCACCTTTTGTG
CCCACCAGTGCATCCAGATCCTGGGTGGGATGGGGTACACCACCGATCTG
CCTGCGGAGCTTTACTACCGCAACGCCCGCGTCACAGAGATTTACGAGGG
AACCTCGGAGATCCAAAGAATTGTGATCGCCAACGCAGTGCTGCGGGAAT
TGGGAAAGGAGTGAAAGCTTTCTAGACCAT
BS13006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1248 | CG4860-PA | 1..1248 | 17..1264 | 6225 | 99.9 | Plus |
Arc42-RA | 1218 | CG4703-PA | 760..1187 | 803..1230 | 370 | 72.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-RA | 1393 | CG4860-RA | 15..1266 | 17..1268 | 6245 | 99.9 | Plus |
Arc42-RA | 1418 | CG4703-RA | 901..1328 | 803..1230 | 370 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12220008..12220986 | 1268..290 | 4895 | 100 | Minus |
3R | 32079331 | 3R | 12221113..12221356 | 293..50 | 1205 | 99.6 | Minus |
3R | 32079331 | 3R | 19878792..19879219 | 803..1230 | 370 | 72.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:41:18 has no hits.
BS13006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:02 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 1..1248 | 17..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:05 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 12..1265 | 14..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:40 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 15..1261 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:03 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 12..1265 | 14..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:03 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4860-RA | 15..1261 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:03 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12220013..12220985 | 291..1263 | 100 | <- | Minus |
3R | 12221116..12221355 | 51..290 | 99 | <- | Minus |
3R | 12221417..12221450 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:40 Download gff for
BS13006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8045735..8046707 | 291..1263 | 100 | <- | Minus |
arm_3R | 8046838..8047077 | 51..290 | 99 | <- | Minus |
arm_3R | 8047139..8047172 | 17..50 | 100 | | Minus |
BS13006.pep Sequence
Translation from 16 to 1263
> BS13006.pep
MQQLIRVARTLGQRSSGAWSARIIAGGNRGIACLAALSETHQILQKTCRE
FANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQA
YAIGMEEVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEH
IAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTKAWISNSKEASGGIVF
ATVDKSMKHKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHV
PRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRV
AFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMA
KLHASESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQ
RIVIANAVLRELGKE*
BS13006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4860-PA | 415 | CG4860-PA | 1..415 | 1..415 | 2101 | 100 | Plus |
Arc42-PA | 405 | CG4703-PA | 19..402 | 29..411 | 1284 | 64.1 | Plus |
CG3902-PA | 414 | CG3902-PA | 34..411 | 34..411 | 698 | 37.5 | Plus |
CG12262-PA | 419 | CG12262-PA | 36..408 | 36..405 | 605 | 37.5 | Plus |
CG6638-PA | 420 | CG6638-PA | 39..418 | 37..411 | 589 | 37 | Plus |