Clone BS13008 Report

Search the DGRC for BS13008

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptcomm2-RA
Protein status:BS13008.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13008.3prime Sequence

788 bp (666 high quality bases) assembled on 2006-10-13

> BS13008.3prime
ATGGTCTAGAAAGCTTTTACCGCTTGATATCGTCTTTCGACTGGCTGTCT
TTTGACTTCGATTTCTTTTTCTCGTCGACGGTTTTGTACGAGCTGCCGAA
TACCTCCGCATAACTGGGCACAATTGGCATCATCACAAAGTTTGGCTTAA
TCGACTCGCACGTGGGCGAAGCTGCCAATGTTGCAGATGTTGCTGTTGCT
GCTGTTACTGCTGTTACTGTTGCTGCTGCATGTGTTGCTGCTGCTGCTGT
TGTTGCTGGGAGCAGCGGCATTGTGGCATCACAAAACGAAGGTGTCTGCG
GTGCCAGGTGATTCTCGGGTGCGGCTGGAGGTGCTGATGTTGCAACTCCT
GGATGCTGCAGCTCCTGGCTGCTCCTCTCCTGCTTATTGAACACATTGAA
CACACTCGGATAGACAATCAGGCAGGATGACTGCGGGGATTTTTGTAGCA
GCTCCAGAGCCGCCTCGTAGCTGGGCAATCCAGATACTAGGGTGTATTCC
GGAACCGGATCCTCCACATCCGGATGCAGTTTCAACGCCTCTATATCTAC
AATGGTGCACTGCGTCGAGCCATTTGCATTGTTGCGATAATTGCGTTTCC
AGGTGCGGAACTGATGGTACAGGAAGCAGGAGCAGATGCAGAAGACCATC
GAGATGAGGATCAGGGTGAAGACGATGCCGATCCACACCTCGTTCATGAA
TTTATCGTACTCCAACTGCTGCTGCAGCTGATCCACACTGCTGCTGTCCA
GAATCACCCGATTGGCCAGATCGAAATCCATGATCTCC

BS13008.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7554-PA 1032 comm2-RA 261..1032 788..17 3860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1516 CG7554-RA 450..1222 788..16 3865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15697888..15698460 16..588 2865 100 Plus
3L 28110227 3L 15699202..15699401 589..788 1000 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:16:23 has no hits.

BS13008.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:02 Download gff for BS13008.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7554-PA 261..1032 17..788 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:22 Download gff for BS13008.3prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 450..1222 16..788 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:59 Download gff for BS13008.3prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 450..1222 16..788 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:59 Download gff for BS13008.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15697888..15698460 16..588 100 <- Plus
3L 15699202..15699401 589..788 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:22 Download gff for BS13008.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15690988..15691560 16..588 100 <- Plus
arm_3L 15692302..15692501 589..788 100   Plus

BS13008.5prime Sequence

749 bp (748 high quality bases) assembled on 2006-10-13

> BS13008.5prime
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCACCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCG

BS13008.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7554-PA 1032 comm2-RA 1..733 17..749 3615 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1516 CG7554-RA 189..922 16..749 3640 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15699202..15699662 476..16 2275 99.6 Minus
3L 28110227 3L 15698188..15698460 749..477 1365 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:41:00 has no hits.

BS13008.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:03 Download gff for BS13008.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7554-PA 1..733 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:31 Download gff for BS13008.5prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 182..922 10..749 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:59 Download gff for BS13008.5prime
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 182..922 10..749 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:59 Download gff for BS13008.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15698188..15698460 477..749 100 <- Minus
3L 15699202..15699669 10..476 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:31 Download gff for BS13008.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15691288..15691560 477..749 100 <- Minus
arm_3L 15692302..15692769 10..476 98   Minus

BS13008.complete Sequence

1064 bp assembled on 2006-11-01

> BS13008.complete
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGA
GAATCACCTGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGC
TGCTCCCAGCAACAACAGCAGCAGCAGCAACACATGCAGCAGCAACAGTA
ACAGCAGTAACAGCAGCAACAGCAACATCTGCAACATTGGCAGCTTCGCC
CACGTGCGAGTCGATTAAGCCAAACTTTGTGATGATGCCAATTGTGCCCA
GTTATGCGGAGGTATTCGGCAGCTCGTACAAAACCGTCGACGAGAAAAAG
AAATCGAAGTCAAAAGACAGCCAGTCGAAAGACGATATCAAGCGGTAAAA
GCTTTCTAGACCAT

BS13008.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1032 CG7554-PA 1..1032 17..1048 5145 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-RA 1516 CG7554-RA 189..1222 16..1049 5155 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15697888..15698460 1049..477 2865 100 Minus
3L 28110227 3L 15699202..15699662 476..16 2290 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:11:38 has no hits.

BS13008.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:04 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 1..1032 17..1048 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:06 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 181..1221 10..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:17 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 190..1219 17..1046 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:04 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 181..1221 10..1049 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:24 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
comm2-RA 190..1219 17..1046 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:24 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15697891..15698460 477..1046 100 <- Minus
3L 15699202..15699661 17..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:17 Download gff for BS13008.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15690991..15691560 477..1046 100 <- Minus
arm_3L 15692302..15692761 17..476 99   Minus

BS13008.pep Sequence

Translation from 16 to 1047

> BS13008.pep
MEELPRALNYELSHDLHFDHYAGAAAQKILNSGRSSPEASTPTITTLDAI
SSSDFLKQIGQQILSSIQLKHQHQLNEVSHPRNSTSEEIMDFDLANRVIL
DSSSVDQLQQQLEYDKFMNEVWIGIVFTLILISMVFCICSCFLYHQFRTW
KRNYRNNANGSTQCTIVDIEALKLHPDVEDPVPEYTLVSGLPSYEAALEL
LQKSPQSSCLIVYPSVFNVFNKQERSSQELQHPGVATSAPPAAPENHLAP
QTPSFCDATMPLLPATTAAAATHAAATVTAVTAATATSATLAASPTCESI
KPNFVMMPIVPSYAEVFGSSYKTVDEKKKSKSKDSQSKDDIKR*

BS13008.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
comm2-PA 343 CG7554-PA 1..343 1..343 1762 100 Plus
comm3-PE 423 CG42334-PE 144..310 113..286 222 30.2 Plus
comm3-PD 423 CG42334-PD 144..310 113..286 222 30.2 Plus
comm-PB 370 CG17943-PB 117..364 101..300 165 25.3 Plus
comm-PA 370 CG17943-PA 117..364 101..300 165 25.3 Plus