Clone Sequence Records
BS13008.3prime Sequence
788 bp (666 high quality bases) assembled on 2006-10-13
> BS13008.3prime
ATGGTCTAGAAAGCTTTTACCGCTTGATATCGTCTTTCGACTGGCTGTCT
TTTGACTTCGATTTCTTTTTCTCGTCGACGGTTTTGTACGAGCTGCCGAA
TACCTCCGCATAACTGGGCACAATTGGCATCATCACAAAGTTTGGCTTAA
TCGACTCGCACGTGGGCGAAGCTGCCAATGTTGCAGATGTTGCTGTTGCT
GCTGTTACTGCTGTTACTGTTGCTGCTGCATGTGTTGCTGCTGCTGCTGT
TGTTGCTGGGAGCAGCGGCATTGTGGCATCACAAAACGAAGGTGTCTGCG
GTGCCAGGTGATTCTCGGGTGCGGCTGGAGGTGCTGATGTTGCAACTCCT
GGATGCTGCAGCTCCTGGCTGCTCCTCTCCTGCTTATTGAACACATTGAA
CACACTCGGATAGACAATCAGGCAGGATGACTGCGGGGATTTTTGTAGCA
GCTCCAGAGCCGCCTCGTAGCTGGGCAATCCAGATACTAGGGTGTATTCC
GGAACCGGATCCTCCACATCCGGATGCAGTTTCAACGCCTCTATATCTAC
AATGGTGCACTGCGTCGAGCCATTTGCATTGTTGCGATAATTGCGTTTCC
AGGTGCGGAACTGATGGTACAGGAAGCAGGAGCAGATGCAGAAGACCATC
GAGATGAGGATCAGGGTGAAGACGATGCCGATCCACACCTCGTTCATGAA
TTTATCGTACTCCAACTGCTGCTGCAGCTGATCCACACTGCTGCTGTCCA
GAATCACCCGATTGGCCAGATCGAAATCCATGATCTCC
BS13008.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7554-PA | 1032 | comm2-RA | 261..1032 | 788..17 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1516 | CG7554-RA | 450..1222 | 788..16 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15697888..15698460 | 16..588 | 2865 | 100 | Plus |
3L | 28110227 | 3L | 15699202..15699401 | 589..788 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:16:23 has no hits.
BS13008.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:02 Download gff for
BS13008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7554-PA | 261..1032 | 17..788 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:22 Download gff for
BS13008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 450..1222 | 16..788 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:45:59 Download gff for
BS13008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 450..1222 | 16..788 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:45:59 Download gff for
BS13008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15697888..15698460 | 16..588 | 100 | <- | Plus |
3L | 15699202..15699401 | 589..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:22 Download gff for
BS13008.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15690988..15691560 | 16..588 | 100 | <- | Plus |
arm_3L | 15692302..15692501 | 589..788 | 100 | | Plus |
BS13008.5prime Sequence
749 bp (748 high quality bases) assembled on 2006-10-13
> BS13008.5prime
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCACCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCG
BS13008.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7554-PA | 1032 | comm2-RA | 1..733 | 17..749 | 3615 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1516 | CG7554-RA | 189..922 | 16..749 | 3640 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15699202..15699662 | 476..16 | 2275 | 99.6 | Minus |
3L | 28110227 | 3L | 15698188..15698460 | 749..477 | 1365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:41:00 has no hits.
BS13008.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:03 Download gff for
BS13008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7554-PA | 1..733 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:31 Download gff for
BS13008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 182..922 | 10..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:59 Download gff for
BS13008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 182..922 | 10..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:59 Download gff for
BS13008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15698188..15698460 | 477..749 | 100 | <- | Minus |
3L | 15699202..15699669 | 10..476 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:31 Download gff for
BS13008.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15691288..15691560 | 477..749 | 100 | <- | Minus |
arm_3L | 15692302..15692769 | 10..476 | 98 | | Minus |
BS13008.complete Sequence
1064 bp assembled on 2006-11-01
> BS13008.complete
GAAGTTATCAGTCGACATGGAGGAATTGCCGCGCGCATTAAACTACGAAC
TCTCGCACGATTTGCATTTCGATCATTACGCCGGTGCCGCAGCTCAGAAG
ATTCTGAACAGCGGGAGAAGTTCTCCTGAAGCGTCCACCCCGACCATCAC
CACATTGGATGCCATCTCCAGCAGTGATTTCCTGAAACAGATTGGCCAGC
AGATCCTCAGTTCCATCCAACTGAAACATCAGCATCAGCTCAACGAAGTC
AGCCATCCGAGGAATTCCACCAGCGAGGAGATCATGGATTTCGATCTGGC
CAATCGGGTGATTCTGGACAGCAGCAGTGTGGATCAGCTGCAGCAGCAGT
TGGAGTACGATAAATTCATGAACGAGGTGTGGATCGGCATCGTCTTCACC
CTGATCCTCATCTCGATGGTCTTCTGCATCTGCTCCTGCTTCCTGTACCA
TCAGTTCCGCACCTGGAAACGCAATTATCGCAACAATGCAAATGGCTCGA
CGCAGTGCACCATTGTAGATATAGAGGCGTTGAAACTGCATCCGGATGTG
GAGGATCCGGTTCCGGAATACACCCTAGTATCTGGATTGCCCAGCTACGA
GGCGGCTCTGGAGCTGCTACAAAAATCCCCGCAGTCATCCTGCCTGATTG
TCTATCCGAGTGTGTTCAATGTGTTCAATAAGCAGGAGAGGAGCAGCCAG
GAGCTGCAGCATCCAGGAGTTGCAACATCAGCACCTCCAGCCGCACCCGA
GAATCACCTGGCACCGCAGACACCTTCGTTTTGTGATGCCACAATGCCGC
TGCTCCCAGCAACAACAGCAGCAGCAGCAACACATGCAGCAGCAACAGTA
ACAGCAGTAACAGCAGCAACAGCAACATCTGCAACATTGGCAGCTTCGCC
CACGTGCGAGTCGATTAAGCCAAACTTTGTGATGATGCCAATTGTGCCCA
GTTATGCGGAGGTATTCGGCAGCTCGTACAAAACCGTCGACGAGAAAAAG
AAATCGAAGTCAAAAGACAGCCAGTCGAAAGACGATATCAAGCGGTAAAA
GCTTTCTAGACCAT
BS13008.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1032 | CG7554-PA | 1..1032 | 17..1048 | 5145 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-RA | 1516 | CG7554-RA | 189..1222 | 16..1049 | 5155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15697888..15698460 | 1049..477 | 2865 | 100 | Minus |
3L | 28110227 | 3L | 15699202..15699662 | 476..16 | 2290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:11:38 has no hits.
BS13008.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:42:04 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 1..1032 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:16:06 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 181..1221 | 10..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:17 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 190..1219 | 17..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:42:04 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 181..1221 | 10..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:24 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
comm2-RA | 190..1219 | 17..1046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:24 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15697891..15698460 | 477..1046 | 100 | <- | Minus |
3L | 15699202..15699661 | 17..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:17 Download gff for
BS13008.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15690991..15691560 | 477..1046 | 100 | <- | Minus |
arm_3L | 15692302..15692761 | 17..476 | 99 | | Minus |
BS13008.pep Sequence
Translation from 16 to 1047
> BS13008.pep
MEELPRALNYELSHDLHFDHYAGAAAQKILNSGRSSPEASTPTITTLDAI
SSSDFLKQIGQQILSSIQLKHQHQLNEVSHPRNSTSEEIMDFDLANRVIL
DSSSVDQLQQQLEYDKFMNEVWIGIVFTLILISMVFCICSCFLYHQFRTW
KRNYRNNANGSTQCTIVDIEALKLHPDVEDPVPEYTLVSGLPSYEAALEL
LQKSPQSSCLIVYPSVFNVFNKQERSSQELQHPGVATSAPPAAPENHLAP
QTPSFCDATMPLLPATTAAAATHAAATVTAVTAATATSATLAASPTCESI
KPNFVMMPIVPSYAEVFGSSYKTVDEKKKSKSKDSQSKDDIKR*
BS13008.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
comm2-PA | 343 | CG7554-PA | 1..343 | 1..343 | 1762 | 100 | Plus |
comm3-PE | 423 | CG42334-PE | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm3-PD | 423 | CG42334-PD | 144..310 | 113..286 | 222 | 30.2 | Plus |
comm-PB | 370 | CG17943-PB | 117..364 | 101..300 | 165 | 25.3 | Plus |
comm-PA | 370 | CG17943-PA | 117..364 | 101..300 | 165 | 25.3 | Plus |