BS13009.complete Sequence
858 bp assembled on 2010-07-02
GenBank Submission: KX804944
> BS13009.complete
GAAGTTATCAGTGGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCG
TAACGCGACAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTG
AGGACGCAACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTG
TAGAAACTACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGG
AGTTGCTATGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCT
CTTGGCAGGCTAGATGCCGACAAGGAAAAAAAATTATACGAGAGTCAACT
GGCTTTCGGTAGTTGGCGCACTCGCTTCGGACGACTTTCTAATAAGACGG
AATTGGGCCAAGTTATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGG
CTGCGAAAAAAATTGGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATT
GTACAGCATTTTCTTTGTAAATGCAGTGCCGTTTATCGCTTTCGGATTCC
TTGACAATTTCATAATGATCATGGCGGGTGAATACATTGAATATTATTTG
GGCCACTTTATAACGCTGTCTACAATGGCAGCCGCAGGACTAGGAAACAC
CATAAGCGATATTTTAGGCATCACTATGGCCACCTACGTTGAGAATGGGT
GCCAGATATTGGGTCTAAAGCAGCCCAATTTGACTCCAGCGCAATTTGAA
TTAAAGTCTAGCAAGCGGTCTTCAAGTTACGGACGGATTGTCGGGATCAC
TGTAGGCTGTTTGCTTGGAATGTGTCCTTTATGGTTTATGGATGAAAAAG
CAGATAAGGTGAATGTAAAAGATGAAATCCCGAAAAATTAGAAAGCTTTC
TAGACCAT
BS13009.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17715-RB | 825 | CG17715-PB | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG17715-RD | 825 | CG17715-PD | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG17715-RG | 810 | CG17715-PG | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17715-RB | 1624 | CG17715-RB | 293..1120 | 17..844 | 4140 | 100 | Plus |
| CG17715-RD | 5581 | CG17715-RD | 352..1179 | 17..844 | 4140 | 100 | Plus |
| CG17715-RG | 1439 | CG17715-RG | 293..1084 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 808242..808520 | 295..17 | 1395 | 100 | Minus |
| 2L | 23513712 | 2L | 22844571..22844849 | 17..295 | 1395 | 100 | Plus |
| 2R | 25286936 | 2R | 803458..803663 | 731..526 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 22849428..22849633 | 526..731 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 803999..804121 | 416..294 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 22848970..22849092 | 294..416 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 803285..803402 | 844..727 | 575 | 99.2 | Minus |
| 2L | 23513712 | 2L | 22849689..22849806 | 727..844 | 575 | 99.2 | Plus |
| 2R | 25286936 | 2R | 803717..803785 | 527..459 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 22849306..22849374 | 459..527 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 803836..803878 | 458..416 | 215 | 100 | Minus |
| 2L | 23513712 | 2L | 22849213..22849255 | 416..458 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:20:00 has no hits.
BS13009.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:46 Download gff for
BS13009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17715-RD | 306..1130 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:48 Download gff for
BS13009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17715-RD | 352..1176 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:58 Download gff for
BS13009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17715-RD | 352..1176 | 17..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:58 Download gff for
BS13009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22849306..22849373 | 459..526 | 100 | -> | Plus |
| 2L | 22849429..22849632 | 527..730 | 100 | -> | Plus |
| 2L | 22849693..22849803 | 731..841 | 100 | | Plus |
| 2L | 22844571..22844847 | 17..293 | 100 | -> | Plus |
| 2L | 22848970..22849092 | 294..416 | 100 | -> | Plus |
| 2L | 22849214..22849255 | 417..458 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:48 Download gff for
BS13009.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22742038..22742105 | 459..526 | 100 | -> | Plus |
| arm_2L | 22737303..22737579 | 17..293 | 100 | -> | Plus |
| arm_2L | 22741702..22741824 | 294..416 | 100 | -> | Plus |
| arm_2L | 22741946..22741987 | 417..458 | 100 | -> | Plus |
| arm_2L | 22742161..22742364 | 527..730 | 100 | -> | Plus |
| arm_2L | 22742425..22742535 | 731..841 | 100 | | Plus |
BS13009.pep Sequence
Translation from 16 to 840
> BS13009.pep
MRNKFQSAIRGVTRQYIIRSWPRGRELLRTQLIIPPSSTSSPFTCRNYSK
FSTHLSMERALELLCNLDDEERGNLRSALGRLDADKEKKLYESQLAFGSW
RTRFGRLSNKTELGQVIAGTFCAVPDDWLRKKLVETAASPTAGQLYSIFF
VNAVPFIAFGFLDNFIMIMAGEYIEYYLGHFITLSTMAAAGLGNTISDIL
GITMATYVENGCQILGLKQPNLTPAQFELKSSKRSSSYGRIVGITVGCLL
GMCPLWFMDEKADKVNVKDEIPKN*
BS13009.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17715-PB | 274 | CG17715-PB | 1..274 | 1..274 | 1422 | 100 | Plus |
| CG17715-PD | 274 | CG17715-PD | 1..274 | 1..274 | 1422 | 100 | Plus |
| CG17715-PG | 269 | CG17715-PG | 1..267 | 1..267 | 1373 | 98.9 | Plus |
| CG17715-PH | 268 | CG17715-PH | 1..268 | 1..274 | 1372 | 97.4 | Plus |
| CG17715-PC | 233 | CG17715-PC | 1..233 | 1..274 | 1150 | 84.7 | Plus |
