Clone Sequence Records
BS13011.3prime Sequence
697 bp (697 high quality bases) assembled on 2006-10-13
> BS13011.3prime
ATGGTCTAGAAAGCTTTTACTCCGCCTTGGCCTTCTTCTTGTAGACGCAA
GCGGCGGTGAAAACGGAGGCGCTAAGGAACGTCGAAATCAGGAAGTTTGA
TAGCAACATCCAATCGTGGGACTGGAAGAACACCGTGTAGATTCGAGTCA
TGTTTGTAAAGGCGGAGAGCGCCCATGTGGTTCTACTGACGGAACTGGCA
TCCTTGGTCCTCAGAATAGCCAGCAGCTGGAGGACCTTACTCGTGGCTCC
AATGGGAGTGCAGAAAGGCACCAGGAACTTAAGGATGATAATGGGAAAGA
GCTTCATGTATATGAGAGTGGCCACTATACTATACAGTATGGCCACCACT
TGCGTCCTCCTTCCCAGCAGATCCTGGTACTTGAAGGCGTAGTAAATCAG
GGCGTACTCCTGCAGCAGCAAAACAGGATACTCCATGTACGAGAGGAAGT
CGTAGCCACTGGTGTAGTTGTACGACAACATCACCGTATAACTGAACAGC
TCCAGGCACAGTCCCAAAAACACTGATGCCTTTCGAGGACTCGTTCGCCC
GTATCGTGTTTATCTGCGGAACCTTGATCACCAGGCAGGACGAGACCGTT
ATCAGGCTAAGGAGGTCCGCCACCACGAGCACTGGGCCGCGCTCCAGGTA
TTCGGACACCACATCTCCGAGAGCTCCACTCATGTCGACTGATAACT
BS13011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-PB | 666 | CG1265-RB | 164..666 | 519..17 | 2515 | 100 | Minus |
CG1265-PB | 666 | CG1265-RB | 1..167 | 683..517 | 835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 828 | CG1265-RB | 40..705 | 683..17 | 3310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4255034..4255295 | 531..269 | 1265 | 99.6 | Minus |
3L | 28110227 | 3L | 4254815..4254969 | 683..529 | 775 | 100 | Minus |
3L | 28110227 | 3L | 4255800..4255930 | 147..17 | 655 | 100 | Minus |
3L | 28110227 | 3L | 4255609..4255730 | 269..148 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:24:01 has no hits.
BS13011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:04 Download gff for
BS13011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-PB | 1..666 | 17..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:55 Download gff for
BS13011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..705 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:59 Download gff for
BS13011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..705 | 17..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:59 Download gff for
BS13011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4254809..4254968 | 530..689 | 98 | -> | Minus |
3L | 4255036..4255295 | 269..529 | 99 | -> | Minus |
3L | 4255610..4255730 | 148..268 | 100 | -> | Minus |
3L | 4255800..4255930 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:55 Download gff for
BS13011.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4254809..4254968 | 530..689 | 98 | -> | Minus |
arm_3L | 4255036..4255295 | 269..529 | 99 | -> | Minus |
arm_3L | 4255610..4255730 | 148..268 | 100 | -> | Minus |
arm_3L | 4255800..4255930 | 17..147 | 100 | | Minus |
BS13011.5prime Sequence
696 bp (696 high quality bases) assembled on 2006-10-13
> BS13011.5prime
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGTAAAAGCTTTCTAGACC
BS13011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-PB | 666 | CG1265-RB | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 828 | CG1265-RB | 40..705 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4255034..4255295 | 169..430 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4254815..4254969 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 4255800..4255930 | 552..682 | 655 | 100 | Plus |
3L | 28110227 | 3L | 4255609..4255730 | 430..551 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:06 has no hits.
BS13011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:05 Download gff for
BS13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-PB | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:12 Download gff for
BS13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..705 | 11..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:55 Download gff for
BS13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 34..705 | 11..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:55 Download gff for
BS13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4254809..4254968 | 11..170 | 98 | -> | Plus |
3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
3L | 4255800..4255930 | 552..682 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:12 Download gff for
BS13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4254809..4254968 | 11..170 | 98 | -> | Plus |
arm_3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
arm_3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
arm_3L | 4255800..4255930 | 552..682 | 100 | | Plus |
BS13011.complete Sequence
698 bp assembled on 2006-11-01
GenBank Submission: FJ637353
> BS13011.complete
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGTAAAAGCTTTCTAGACCAT
BS13011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 666 | CG1265-PB | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-RB | 828 | CG1265-RB | 40..705 | 17..682 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4255034..4255295 | 169..430 | 1310 | 100 | Plus |
3L | 28110227 | 3L | 4254815..4254969 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 4255800..4255930 | 552..682 | 655 | 100 | Plus |
3L | 28110227 | 3L | 4255609..4255730 | 430..551 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:39:19 has no hits.
BS13011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:45 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:45 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 36..707 | 11..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:53 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 40..703 | 17..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:45 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 36..707 | 11..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:44 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1265-RB | 40..703 | 17..680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:44 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
3L | 4255800..4255928 | 552..680 | 100 | | Plus |
3L | 4254815..4254968 | 17..170 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:53 Download gff for
BS13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4255036..4255295 | 171..430 | 100 | -> | Plus |
arm_3L | 4255610..4255730 | 431..551 | 100 | -> | Plus |
arm_3L | 4254815..4254968 | 17..170 | 100 | -> | Plus |
arm_3L | 4255800..4255928 | 552..680 | 100 | | Plus |
BS13011.pep Sequence
Translation from 16 to 681
> BS13011.pep
MSGALGDVVSEYLERGPVLVVADLLSLITVSSCLVIKVPQINTIRANESS
KGISVLGLCLELFSYTVMLSYNYTSGYDFLSYMEYPVLLLQEYALIYYAF
KYQDLLGRRTQVVAILYSIVATLIYMKLFPIIILKFLVPFCTPIGATSKV
LQLLAILRTKDASSVSRTTWALSAFTNMTRIYTVFFQSHDWMLLSNFLIS
TFLSASVFTAACVYKKKAKAE*
BS13011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1265-PB | 221 | CG1265-PB | 1..221 | 1..221 | 1100 | 100 | Plus |
CG3792-PA | 252 | CG3792-PA | 41..232 | 25..217 | 175 | 24.5 | Plus |