Clone BS13011 Report

Search the DGRC for BS13011

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG1265-RB
Protein status:BS13011.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13011.3prime Sequence

697 bp (697 high quality bases) assembled on 2006-10-13

> BS13011.3prime
ATGGTCTAGAAAGCTTTTACTCCGCCTTGGCCTTCTTCTTGTAGACGCAA
GCGGCGGTGAAAACGGAGGCGCTAAGGAACGTCGAAATCAGGAAGTTTGA
TAGCAACATCCAATCGTGGGACTGGAAGAACACCGTGTAGATTCGAGTCA
TGTTTGTAAAGGCGGAGAGCGCCCATGTGGTTCTACTGACGGAACTGGCA
TCCTTGGTCCTCAGAATAGCCAGCAGCTGGAGGACCTTACTCGTGGCTCC
AATGGGAGTGCAGAAAGGCACCAGGAACTTAAGGATGATAATGGGAAAGA
GCTTCATGTATATGAGAGTGGCCACTATACTATACAGTATGGCCACCACT
TGCGTCCTCCTTCCCAGCAGATCCTGGTACTTGAAGGCGTAGTAAATCAG
GGCGTACTCCTGCAGCAGCAAAACAGGATACTCCATGTACGAGAGGAAGT
CGTAGCCACTGGTGTAGTTGTACGACAACATCACCGTATAACTGAACAGC
TCCAGGCACAGTCCCAAAAACACTGATGCCTTTCGAGGACTCGTTCGCCC
GTATCGTGTTTATCTGCGGAACCTTGATCACCAGGCAGGACGAGACCGTT
ATCAGGCTAAGGAGGTCCGCCACCACGAGCACTGGGCCGCGCTCCAGGTA
TTCGGACACCACATCTCCGAGAGCTCCACTCATGTCGACTGATAACT

BS13011.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-PB 666 CG1265-RB 164..666 519..17 2515 100 Minus
CG1265-PB 666 CG1265-RB 1..167 683..517 835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 828 CG1265-RB 40..705 683..17 3310 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4255034..4255295 531..269 1265 99.6 Minus
3L 28110227 3L 4254815..4254969 683..529 775 100 Minus
3L 28110227 3L 4255800..4255930 147..17 655 100 Minus
3L 28110227 3L 4255609..4255730 269..148 610 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:24:01 has no hits.

BS13011.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:04 Download gff for BS13011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-PB 1..666 17..683 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:28:55 Download gff for BS13011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..705 17..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:59 Download gff for BS13011.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..705 17..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:59 Download gff for BS13011.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4254809..4254968 530..689 98 -> Minus
3L 4255036..4255295 269..529 99 -> Minus
3L 4255610..4255730 148..268 100 -> Minus
3L 4255800..4255930 17..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:28:55 Download gff for BS13011.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4254809..4254968 530..689 98 -> Minus
arm_3L 4255036..4255295 269..529 99 -> Minus
arm_3L 4255610..4255730 148..268 100 -> Minus
arm_3L 4255800..4255930 17..147 100   Minus

BS13011.5prime Sequence

696 bp (696 high quality bases) assembled on 2006-10-13

> BS13011.5prime
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGTAAAAGCTTTCTAGACC

BS13011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-PB 666 CG1265-RB 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 828 CG1265-RB 40..705 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4255034..4255295 169..430 1310 100 Plus
3L 28110227 3L 4254815..4254969 17..171 775 100 Plus
3L 28110227 3L 4255800..4255930 552..682 655 100 Plus
3L 28110227 3L 4255609..4255730 430..551 610 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:03:06 has no hits.

BS13011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:05 Download gff for BS13011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-PB 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:12 Download gff for BS13011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..705 11..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:55 Download gff for BS13011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 34..705 11..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:55 Download gff for BS13011.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4254809..4254968 11..170 98 -> Plus
3L 4255036..4255295 171..430 100 -> Plus
3L 4255610..4255730 431..551 100 -> Plus
3L 4255800..4255930 552..682 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:12 Download gff for BS13011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4254809..4254968 11..170 98 -> Plus
arm_3L 4255036..4255295 171..430 100 -> Plus
arm_3L 4255610..4255730 431..551 100 -> Plus
arm_3L 4255800..4255930 552..682 100   Plus

BS13011.complete Sequence

698 bp assembled on 2006-11-01

GenBank Submission: FJ637353

> BS13011.complete
GAAGTTATCAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAAT
ACCTGGAGCGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATA
ACGGTCTCGTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACG
GGCGAACGAGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGC
TGTTCAGTTATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGAC
TTCCTCTCGTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCT
GATTTACTACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAG
TGGTGGCCATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTC
TTTCCCATTATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGG
AGCCACGAGTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATG
CCAGTTCCGTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATG
ACTCGAATCTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATC
AAACTTCCTGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTT
GCGTCTACAAGAAGAAGGCCAAGGCGGAGTAAAAGCTTTCTAGACCAT

BS13011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 666 CG1265-PB 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-RB 828 CG1265-RB 40..705 17..682 3330 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4255034..4255295 169..430 1310 100 Plus
3L 28110227 3L 4254815..4254969 17..171 775 100 Plus
3L 28110227 3L 4255800..4255930 552..682 655 100 Plus
3L 28110227 3L 4255609..4255730 430..551 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:39:19 has no hits.

BS13011.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:45 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:45 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 36..707 11..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:53 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 40..703 17..680 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:45 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 36..707 11..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:44 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
CG1265-RB 40..703 17..680 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:44 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4255036..4255295 171..430 100 -> Plus
3L 4255610..4255730 431..551 100 -> Plus
3L 4255800..4255928 552..680 100   Plus
3L 4254815..4254968 17..170 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:53 Download gff for BS13011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4255036..4255295 171..430 100 -> Plus
arm_3L 4255610..4255730 431..551 100 -> Plus
arm_3L 4254815..4254968 17..170 100 -> Plus
arm_3L 4255800..4255928 552..680 100   Plus

BS13011.pep Sequence

Translation from 16 to 681

> BS13011.pep
MSGALGDVVSEYLERGPVLVVADLLSLITVSSCLVIKVPQINTIRANESS
KGISVLGLCLELFSYTVMLSYNYTSGYDFLSYMEYPVLLLQEYALIYYAF
KYQDLLGRRTQVVAILYSIVATLIYMKLFPIIILKFLVPFCTPIGATSKV
LQLLAILRTKDASSVSRTTWALSAFTNMTRIYTVFFQSHDWMLLSNFLIS
TFLSASVFTAACVYKKKAKAE*

BS13011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1265-PB 221 CG1265-PB 1..221 1..221 1100 100 Plus
CG3792-PA 252 CG3792-PA 41..232 25..217 175 24.5 Plus