Clone BS13013 Report

Search the DGRC for BS13013

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptmthl9-RA
Protein status:BS13013.pep: full length peptide match
Sequenced Size:1574

Clone Sequence Records

BS13013.complete Sequence

1574 bp assembled on 2009-12-07

GenBank Submission: KX805702

> BS13013.complete
GAAGTTATCAGTCGACATGGTCTCGCCATTGATAATTCTTTTAATTATTT
GGCTCTCCGTGGGCGCAAAGTCAGTGGAGATCGCCAGTATAAACCATCCC
TGTGCCTACGCCCACACGGTCAACATTACGGATGGACTGCGGATGAAGGA
TGGCTCCTACTCATACGCTGGAGTAGTGGTCCCACCGCATCTGATGGCGG
AGTACTCCTTCAAGGTGATCGATGGAGTGGAGTACCGGGCCAAGAAACAT
CTGCGCGGCTGCGTCTGTCTGCTGAAGCCCTGCATCAGTTTCTGTTGTCC
GGAGAACCTCGTCTTTGATGCCAAGCACTGGAACTGCACAATGCCACACC
AAGTCCGCGAGTCCACTCACGTGGAGCTCACCTACGCTAACAGGACTGTG
GATCAAGTACGCATACGCGATCGTTTTGTGGTGCGCACAGAGCTGGGTTG
CCGGAACAAATTCGTGGACAAAAAGCACGATAACTTCTGGCAATGGGACC
TCTTCGAGAATGGAACTCTGCGGCGGGACAATCGTCTGTGGTCAACGGAT
GAGTATTGCTTTAGCCCGTTGGAGCACAATCCGGAGCAGTGGGAGCTCAC
TCCGCTCAACTGCGAACGCTTTCAAACGGGGTACCGGGTTTGGATTTACG
CCATTTGCAGTATTATAGCCATCATTATAAACATTTTCATACTCTCCCTA
CTTGGATCTGTGAGAGATGCCCGTAAAAGCCACTATGGCCAGTTAATCAT
CTACTACTTGCTGTCCATGATCGTTGGTTACTCCCTGTTGGTCTACTTGG
CCTTGAAGAATCCCATGAAGCTCTCGCATGTGGCTTGCAGAAACATAGGA
TTTCTGGCCTACTTCTGCATCATGCTCTCCTTCGTCTTTCTGGCCATTTG
CAGTCTTGACTTTCTGCTCAAATTTAAACAAAAGGCTGTCAGGAGCTCCG
TCCGTCGATTGTCCCTTGCTCTGGCAGTTCTGGCGGTGATTGGTCTTCGG
TTTTTGGTCTCCTTAGCCCAGGACTCCAAGCTGCCCAAGCACTTCAAGCC
AGGCATGGGAGAAGATTACTGCTGGTTCGATGTTCGCACCTGGGGTATTT
TGATCTACTACTACGGACCCATTGCACTCCTCCTGATATTCAGCATTGTA
TGCTGTCTCAAGGCGTACTTTTCCATCTACGAACTGCCACCAGATACTCA
GTACATATTGGGCACTCAACTGAAAATCGTCAAGACGCATTTCTATGCCT
TTAGCGCTTACATAGTGGGCGTGTTTGCGGTCTGGATCCGAGAAATAGTC
GTGTATATAATGGCCAGAGTGAGAGAGCATTTCTTCATCATTGACTTCTG
GAGTGGAATTTGCATTCTGGGCCTGGCCATAGCTGGTTTTATTCTGCTCC
TTGGCAAGAATTTGCACGTCAAATCCTGGTGGGCCATTAATGTGGAATCA
AGTCAGACAGATCTGAGTATTATTAATGCTCGCGTATACAAGTTCGATGA
GAAAGGCGATCTAAAATCTTCAGACTCTCCCTACAAGCCGACAGTGACAT
CACTTTAAAAGCTTTCTAGACCAT

BS13013.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
mthl9-RA 1542 CG17084-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
mthl9-RA 2133 CG17084-RA 373..1915 16..1558 7715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 331296..331937 657..16 3210 100 Minus
3L 28110227 3L 330756..330991 1082..847 1180 100 Minus
3L 28110227 3L 330277..330481 1444..1240 1025 100 Minus
3L 28110227 3L 331048..331240 849..657 965 100 Minus
3L 28110227 3L 330541..330698 1239..1082 790 100 Minus
3L 28110227 3L 330136..330215 1523..1444 400 100 Minus
3L 28110227 3L 330040..330077 1558..1521 190 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:01:34 has no hits.

BS13013.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:37 Download gff for BS13013.complete
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 371..1910 17..1556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:55 Download gff for BS13013.complete
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 374..1913 17..1556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:41 Download gff for BS13013.complete
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 371..1910 17..1556 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:14 Download gff for BS13013.complete
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 374..1913 17..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:14 Download gff for BS13013.complete
Subject Subject Range Query Range Percent Splice Strand
3L 331049..331240 657..848 100 <- Minus
3L 330042..330074 1524..1556 100 <- Minus
3L 330136..330215 1444..1523 100 <- Minus
3L 330278..330481 1240..1443 100 <- Minus
3L 330541..330697 1083..1239 100 <- Minus
3L 330756..330989 849..1082 100 <- Minus
3L 331297..331936 17..656 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:55 Download gff for BS13013.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 331049..331240 657..848 100 <- Minus
arm_3L 330042..330074 1524..1556 100 <- Minus
arm_3L 330136..330215 1444..1523 100 <- Minus
arm_3L 330278..330481 1240..1443 100 <- Minus
arm_3L 330541..330697 1083..1239 100 <- Minus
arm_3L 330756..330989 849..1082 100 <- Minus
arm_3L 331297..331936 17..656 100   Minus

BS13013.3prime Sequence

645 bp (643 high quality bases) assembled on 2006-10-13

> BS13013.3prime
ATGGTCTAGAAAGCTTTTAAAGTGATGTCACTGTCGGCTTGTAGGGAGAG
TCTGAAGATTTTAGATCGCCTTTCTCATCGAACTTGTATACGCGAGCATT
AATAATACTCAGATCTGTCTGACTTGATTCCACATTAATGGCCCACCAGG
ATTTGACGTGCAAATTCTTGCCAAGGAGCAGAATAAAACCAGCTATGGCC
AGGCCCAGAATGCAAATTCCACTCCAGAAGTCAATGATGAAGAAATGCTC
TCTCACTCTGGCCATTATATACACGACTATTTCTCGGATCCAGACCGCAA
ACACGCCCACTATGTAAGCGCTAAAGGCATAGAAATGCGTCTTGACGATT
TTCAGTTGAGTGCCCAATATGTACTGAGTATCTGGTGGCAGTTCGTAGAT
GGAAAAGTACGCCTTGAGACAGCATACAATGCTGAATATCAGGAGGAGTG
CAATGGGTCCGTAGTAGTAGATCAAAATACCCCAGGTGCGAACATCGAAC
CAGCAGTAATCTTCTCCCATGCCTGGCTTGAAGTGCTTGGGCAGCTTGGA
GTCCTGGGCTAAGGAGACCAAAAACCGAAGACCAATCACCGCCAGAACTG
CCAGAGCAAGGGACAATCGACGGACGGAGCTCCTGACAGCCTTTT

BS13013.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17084-PA 1542 mthl9-RA 914..1542 645..17 3145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
mthl9-RA 2133 CG17084-RA 1287..1915 645..17 3145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 330277..330481 131..335 1025 100 Plus
3L 28110227 3L 330541..330698 336..493 790 100 Plus
3L 28110227 3L 330756..330908 493..645 765 100 Plus
3L 28110227 3L 330136..330215 52..131 400 100 Plus
3L 28110227 3L 330040..330077 17..54 190 100 Plus
Blast to na_te.dros performed 2015-02-12 16:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 3096..3156 563..624 109 66.1 Plus

BS13013.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:06 Download gff for BS13013.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17084-PA 914..1542 17..645 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:47 Download gff for BS13013.3prime
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 1287..1918 14..645 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:53 Download gff for BS13013.3prime
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 1287..1918 14..645 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:53 Download gff for BS13013.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 330756..330908 493..645 100   Plus
3L 330037..330074 14..51 97 <- Plus
3L 330136..330215 52..131 100 <- Plus
3L 330278..330481 132..335 100 <- Plus
3L 330541..330697 336..492 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:47 Download gff for BS13013.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 330037..330074 14..51 97 <- Plus
arm_3L 330136..330215 52..131 100 <- Plus
arm_3L 330278..330481 132..335 100 <- Plus
arm_3L 330541..330697 336..492 100 <- Plus
arm_3L 330756..330908 493..645 100   Plus

BS13013.5prime Sequence

638 bp (636 high quality bases) assembled on 2006-10-13

> BS13013.5prime
GAAGTTATCAGTCGACATGGTCTCGCCATTGATAATTCTTTTAATTATTT
GGCTCTCCGTGGGCGCAAAGTCAGTGGAGATCGCCAGTATAAACCATCCC
TGTGCCTACGCCCACACGGTCAACATTACGGATGGACTGCGGATGAAGGA
TGGCTCCTACTCATACGCTGGAGTAGTGGTCCCACCGCATCTGATGGCGG
AGTACTCCTTCAAGGTGATCGATGGAGTGGAGTACCGGGCCAAGAAACAT
CTGCGCGGCTGCGTCTGTCTGCTGAAGCCCTGCATCAGTTTCTGTTGTCC
GGAGAACCTCGTCTTTGATGCCAAGCACTGGAACTGCACAATGCCACACC
AAGTCCGCGAGTCCACTCACGTGGAGCTCACCTACGCTAACAGGACTGTG
GATCAAGTACGCATACGCGATCGTTTTGTGGTGCGCACAGAGCTGGGTTG
CCGGAACAAATTCGTGGACAAAAAGCACGATAACTTCTGGCAATGGGACC
TCTTCGAGAATGGAACTCTGCGGCGGGACAATCGTCTGTGGTCAACGGAT
GAATATTGCTTTAGCCCGTTGGAGCACAATCCGGAGCAGTGGGAGCTCAC
TCTGCTCAACTGCGAACGCTTTCAAACGGGGTACCGGG

BS13013.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17084-PA 1542 mthl9-RA 1..622 17..638 3060 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
mthl9-RA 2133 CG17084-RA 373..995 16..638 3085 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 331315..331937 638..16 3085 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 18:08:07 has no hits.

BS13013.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:07 Download gff for BS13013.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17084-PA 1..622 17..638 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:55 Download gff for BS13013.5prime
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 363..995 7..638 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:40:48 Download gff for BS13013.5prime
Subject Subject Range Query Range Percent Splice Strand
mthl9-RA 363..995 7..638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:40:48 Download gff for BS13013.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 331315..331947 7..638 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:55 Download gff for BS13013.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 331315..331947 7..638 99   Minus

BS13013.pep Sequence

Translation from 16 to 1557

> BS13013.pep
MVSPLIILLIIWLSVGAKSVEIASINHPCAYAHTVNITDGLRMKDGSYSY
AGVVVPPHLMAEYSFKVIDGVEYRAKKHLRGCVCLLKPCISFCCPENLVF
DAKHWNCTMPHQVRESTHVELTYANRTVDQVRIRDRFVVRTELGCRNKFV
DKKHDNFWQWDLFENGTLRRDNRLWSTDEYCFSPLEHNPEQWELTPLNCE
RFQTGYRVWIYAICSIIAIIINIFILSLLGSVRDARKSHYGQLIIYYLLS
MIVGYSLLVYLALKNPMKLSHVACRNIGFLAYFCIMLSFVFLAICSLDFL
LKFKQKAVRSSVRRLSLALAVLAVIGLRFLVSLAQDSKLPKHFKPGMGED
YCWFDVRTWGILIYYYGPIALLLIFSIVCCLKAYFSIYELPPDTQYILGT
QLKIVKTHFYAFSAYIVGVFAVWIREIVVYIMARVREHFFIIDFWSGICI
LGLAIAGFILLLGKNLHVKSWWAINVESSQTDLSIINARVYKFDEKGDLK
SSDSPYKPTVTSL*

BS13013.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
mthl9-PA 513 CG17084-PA 1..513 1..513 2726 100 Plus
mthl8-PB 492 CG32475-PB 27..471 26..471 580 30.2 Plus
mthl8-PA 492 CG32475-PA 27..471 26..471 580 30.2 Plus
mthl10-PD 557 CG17061-PD 53..506 26..462 439 27.1 Plus
mthl10-PG 575 CG17061-PG 53..506 26..462 439 27.1 Plus