Clone Sequence Records
BS13015.complete Sequence
1490 bp assembled on 2009-12-07
GenBank Submission: KX804646
> BS13015.complete
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAATCGC
TGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCAACGA
TCGGCGTGGGATAAGATTGCTAGGGAATCATTTAAAATTGAGGGAAATGT
GAATCTCATTCGTTGTTGCAATGGAGTGCCCTCAATACCGAAGCTGGATA
AAATATTTCAGCCCATTGATAGCAAGATCAAGAAATCAAAAAAGGTTGTG
GAGGCTGAAAAACCAGAAAATACTCCAAGTGATCTTCCAGAAATAGAAAT
AGATTTATCTATTAAAGTCAAGGGGCAGGAAATAAACCTGCGAGAATACG
GAACCCAACTCAAGAAACATATTGCAAGCTCAGAGAGCTTCGACATTTTG
ATAAGTAGAATGTCAGAGCATTTGGAAGTCGACACTTTTAAGCTTATAAT
GGCGCTAACGCAAACATTTGTGGAAACTGTGAGGGAGGAAATGTGCCAAA
TGCTAAAATATTATTTTCCCACGGAATCCATTCTATATCAGATAATACTG
TGCATAAGTAAGCACCATCCAAAGTGGGACTTCAATGAAATTGAAGAGCA
TTCGTCGGATATTTTGAGGCGCGTACGAATGTTTTTTGTTTCTACTGGAC
CGAATCCCTATGCTGAATTTTTAAAGAAATGTGAAGTATGTCCTGGATAC
TACGACATATGCAAATCGACTTAAAAGCTTTCTAGACCAT
BS13015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1458 | CG32243-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1639 | CG32243-RA | 77..1536 | 17..1476 | 7300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4539405..4540032 | 1476..849 | 3140 | 100 | Minus |
3L | 28110227 | 3L | 4540295..4540654 | 703..344 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 4540085..4540231 | 849..703 | 735 | 100 | Minus |
3L | 28110227 | 3L | 4540713..4540847 | 344..210 | 675 | 100 | Minus |
3L | 28110227 | 3L | 4541065..4541168 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 4540922..4541011 | 210..121 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:54:12 has no hits.
BS13015.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:57 Download gff for
BS13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 71..1526 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:59 Download gff for
BS13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..1532 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:59 Download gff for
BS13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 71..1526 | 17..1472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:33 Download gff for
BS13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..1532 | 17..1472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:33 Download gff for
BS13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4539409..4540031 | 850..1472 | 100 | <- | Minus |
3L | 4540085..4540230 | 704..849 | 100 | <- | Minus |
3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
3L | 4541065..4541168 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:59 Download gff for
BS13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4539409..4540031 | 850..1472 | 100 | <- | Minus |
arm_3L | 4540085..4540230 | 704..849 | 100 | <- | Minus |
arm_3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
arm_3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
arm_3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
arm_3L | 4541065..4541168 | 17..120 | 100 | | Minus |
BS13015.3prime Sequence
780 bp (705 high quality bases) assembled on 2006-10-13
> BS13015.3prime
ATGGTCTAGAAAGCTTTTAAGTCGATTTGCATATGTCGTAGTATCCAGGA
CATACTTCACATTTCTTTAAAAATTCAGCATAGGGATTCGGTCCAGTAGA
AACAAAAAACATTCGTACGCGCCTCAAAATATCCGACGAATGCTCTTCAA
TTTCATTGAAGTCCCACTTTGGATGGTGCTTACTTATGCACAGTATTATC
TGATATAGAATGGATTCCGTGGGAAAATAATATTTTAGCATTTGGCACAT
TTCCTCCCTCACAGTTTCCACAAATGTTTGCGTTAGCGCCATTATAAGCT
TAAAAGTGTCGACTTCCAAATGCTCTGACATTCTACTTATCAAAATGTCG
AAGCTCTCTGAGCTTGCAATATGTTTCTTGAGTTGGGTTCCGTATTCTCG
CAGGTTTATTTCCTGCCCCTTGACTTTAATAGATAAATCTATTTCTATTT
CTGGAAGATCACTTGGAGTATTTTCTGGTTTTTCAGCCTCCACAACCTTT
TTTGATTTCTTGATCTTGCTATCAATGGGCTGAAATATTTTATCCAGCTT
CGGTATTGAGGGCACTCCATTGCAACAACGAATGAGATTCACATTTCCCT
CAATTTTAAATGATTCCCTAGCAATCTTATCCCACGCCGATCGTTGCTGA
TTAACAAAAATGCTGGGATCATTATTATTATTATTCATCAGCGATTCAAG
GCGTGAATTGTACAGATTATTCGTAAATAATACTAAGGAATCGGATAGAC
CAGCCCCATCACCAGAATGTGTAGAACTAT
BS13015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-PA | 1458 | CG32243-RA | 695..1458 | 780..17 | 3770 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1639 | CG32243-RA | 771..1536 | 780..15 | 3800 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4539405..4540032 | 15..642 | 3140 | 100 | Plus |
3L | 28110227 | 3L | 4540085..4540223 | 642..780 | 665 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:39:23 has no hits.
BS13015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:08 Download gff for
BS13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-PA | 695..1458 | 17..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:44 Download gff for
BS13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 771..1536 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:16 Download gff for
BS13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 771..1536 | 15..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:16 Download gff for
BS13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4539405..4540031 | 15..641 | 100 | <- | Plus |
3L | 4540085..4540223 | 642..780 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:44 Download gff for
BS13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4539405..4540031 | 15..641 | 100 | <- | Plus |
arm_3L | 4540085..4540223 | 642..780 | 98 | | Plus |
BS13015.5prime Sequence
756 bp (697 high quality bases) assembled on 2006-10-13
> BS13015.5prime
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAATTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTT
BS13015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-PA | 1458 | CG32243-RA | 1..740 | 17..756 | 3675 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-RA | 1639 | CG32243-RA | 77..816 | 17..756 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4540295..4540654 | 703..344 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 4540713..4540847 | 344..210 | 675 | 100 | Minus |
3L | 28110227 | 3L | 4541065..4541168 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 4540922..4541011 | 210..121 | 450 | 100 | Minus |
3L | 28110227 | 3L | 4540178..4540231 | 756..703 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:32:57 has no hits.
BS13015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:09 Download gff for
BS13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-PA | 1..740 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:49 Download gff for
BS13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..816 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:13 Download gff for
BS13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32243-RA | 77..816 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:13 Download gff for
BS13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4540178..4540230 | 704..756 | 98 | <- | Minus |
3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
3L | 4541065..4541168 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:49 Download gff for
BS13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4540713..4540847 | 210..344 | 100 | <- | Minus |
arm_3L | 4540923..4541011 | 121..209 | 100 | <- | Minus |
arm_3L | 4541065..4541168 | 17..120 | 100 | | Minus |
arm_3L | 4540178..4540230 | 704..756 | 98 | <- | Minus |
arm_3L | 4540295..4540653 | 345..703 | 100 | <- | Minus |
BS13015.pep Sequence
Translation from 16 to 1473
> BS13015.pep
MSAPKGDGNLVPTVREVQQKFADILGHGNDITWDLISSGQENILKAKLSL
LNFDSNMFHAIWSYRKYSKGQSLTSLFFVMVVNNVYDPKLAEESRSWRLY
PVFRCRRCVDETGHSSNIDCCMSYVSQYSMSDSWNRFVTHTGFAAGLMVT
PYLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRK
IIIHSVPFLVYPEEVFDFCASEKMLSSILNPHSSTQSGDVAGLSDSLVLF
TNNLYNSRLESLMNNNNNDPSIFVNQQRSAWDKIARESFKIEGNVNLIRC
CNGVPSIPKLDKIFQPIDSKIKKSKKVVEAEKPENTPSDLPEIEIDLSIK
VKGQEINLREYGTQLKKHIASSESFDILISRMSEHLEVDTFKLIMALTQT
FVETVREEMCQMLKYYFPTESILYQIILCISKHHPKWDFNEIEEHSSDIL
RRVRMFFVSTGPNPYAEFLKKCEVCPGYYDICKST*
BS13015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32243-PA | 485 | CG32243-PA | 1..485 | 1..485 | 2553 | 100 | Plus |
pst-PG | 682 | CG8588-PG | 6..201 | 6..170 | 288 | 33.7 | Plus |
pst-PE | 682 | CG8588-PE | 6..201 | 6..170 | 288 | 33.7 | Plus |
pst-PF | 707 | CG8588-PF | 6..226 | 6..170 | 252 | 29.9 | Plus |
pst-PG | 682 | CG8588-PG | 546..680 | 348..482 | 251 | 34.8 | Plus |
pst-PE | 682 | CG8588-PE | 546..680 | 348..482 | 251 | 34.8 | Plus |
pst-PF | 707 | CG8588-PF | 571..705 | 348..482 | 251 | 34.8 | Plus |
CG7730-PC | 581 | CG7730-PC | 339..578 | 239..481 | 199 | 26.6 | Plus |