Clone BS13015 Report

Search the DGRC for BS13015

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG32243-RA
Protein status:BS13015.pep: full length peptide match
Sequenced Size:1490

Clone Sequence Records

BS13015.complete Sequence

1490 bp assembled on 2009-12-07

GenBank Submission: KX804646

> BS13015.complete
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAGTTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTTAGTATTATTTACGAATAATCTGTACAATTCACGCCTTGAATCGC
TGATGAATAATAATAATAATGATCCCAGCATTTTTGTTAATCAGCAACGA
TCGGCGTGGGATAAGATTGCTAGGGAATCATTTAAAATTGAGGGAAATGT
GAATCTCATTCGTTGTTGCAATGGAGTGCCCTCAATACCGAAGCTGGATA
AAATATTTCAGCCCATTGATAGCAAGATCAAGAAATCAAAAAAGGTTGTG
GAGGCTGAAAAACCAGAAAATACTCCAAGTGATCTTCCAGAAATAGAAAT
AGATTTATCTATTAAAGTCAAGGGGCAGGAAATAAACCTGCGAGAATACG
GAACCCAACTCAAGAAACATATTGCAAGCTCAGAGAGCTTCGACATTTTG
ATAAGTAGAATGTCAGAGCATTTGGAAGTCGACACTTTTAAGCTTATAAT
GGCGCTAACGCAAACATTTGTGGAAACTGTGAGGGAGGAAATGTGCCAAA
TGCTAAAATATTATTTTCCCACGGAATCCATTCTATATCAGATAATACTG
TGCATAAGTAAGCACCATCCAAAGTGGGACTTCAATGAAATTGAAGAGCA
TTCGTCGGATATTTTGAGGCGCGTACGAATGTTTTTTGTTTCTACTGGAC
CGAATCCCTATGCTGAATTTTTAAAGAAATGTGAAGTATGTCCTGGATAC
TACGACATATGCAAATCGACTTAAAAGCTTTCTAGACCAT

BS13015.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1458 CG32243-PA 1..1458 17..1474 7290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1639 CG32243-RA 77..1536 17..1476 7300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4539405..4540032 1476..849 3140 100 Minus
3L 28110227 3L 4540295..4540654 703..344 1800 100 Minus
3L 28110227 3L 4540085..4540231 849..703 735 100 Minus
3L 28110227 3L 4540713..4540847 344..210 675 100 Minus
3L 28110227 3L 4541065..4541168 120..17 520 100 Minus
3L 28110227 3L 4540922..4541011 210..121 450 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:54:12 has no hits.

BS13015.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:57 Download gff for BS13015.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 71..1526 17..1472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:59 Download gff for BS13015.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..1532 17..1472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:59 Download gff for BS13015.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 71..1526 17..1472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:33 Download gff for BS13015.complete
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..1532 17..1472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:33 Download gff for BS13015.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4539409..4540031 850..1472 100 <- Minus
3L 4540085..4540230 704..849 100 <- Minus
3L 4540295..4540653 345..703 100 <- Minus
3L 4540713..4540847 210..344 100 <- Minus
3L 4540923..4541011 121..209 100 <- Minus
3L 4541065..4541168 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:59 Download gff for BS13015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4539409..4540031 850..1472 100 <- Minus
arm_3L 4540085..4540230 704..849 100 <- Minus
arm_3L 4540295..4540653 345..703 100 <- Minus
arm_3L 4540713..4540847 210..344 100 <- Minus
arm_3L 4540923..4541011 121..209 100 <- Minus
arm_3L 4541065..4541168 17..120 100   Minus

BS13015.3prime Sequence

780 bp (705 high quality bases) assembled on 2006-10-13

> BS13015.3prime
ATGGTCTAGAAAGCTTTTAAGTCGATTTGCATATGTCGTAGTATCCAGGA
CATACTTCACATTTCTTTAAAAATTCAGCATAGGGATTCGGTCCAGTAGA
AACAAAAAACATTCGTACGCGCCTCAAAATATCCGACGAATGCTCTTCAA
TTTCATTGAAGTCCCACTTTGGATGGTGCTTACTTATGCACAGTATTATC
TGATATAGAATGGATTCCGTGGGAAAATAATATTTTAGCATTTGGCACAT
TTCCTCCCTCACAGTTTCCACAAATGTTTGCGTTAGCGCCATTATAAGCT
TAAAAGTGTCGACTTCCAAATGCTCTGACATTCTACTTATCAAAATGTCG
AAGCTCTCTGAGCTTGCAATATGTTTCTTGAGTTGGGTTCCGTATTCTCG
CAGGTTTATTTCCTGCCCCTTGACTTTAATAGATAAATCTATTTCTATTT
CTGGAAGATCACTTGGAGTATTTTCTGGTTTTTCAGCCTCCACAACCTTT
TTTGATTTCTTGATCTTGCTATCAATGGGCTGAAATATTTTATCCAGCTT
CGGTATTGAGGGCACTCCATTGCAACAACGAATGAGATTCACATTTCCCT
CAATTTTAAATGATTCCCTAGCAATCTTATCCCACGCCGATCGTTGCTGA
TTAACAAAAATGCTGGGATCATTATTATTATTATTCATCAGCGATTCAAG
GCGTGAATTGTACAGATTATTCGTAAATAATACTAAGGAATCGGATAGAC
CAGCCCCATCACCAGAATGTGTAGAACTAT

BS13015.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 1458 CG32243-RA 695..1458 780..17 3770 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1639 CG32243-RA 771..1536 780..15 3800 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4539405..4540032 15..642 3140 100 Plus
3L 28110227 3L 4540085..4540223 642..780 665 98.6 Plus
Blast to na_te.dros performed on 2015-02-12 11:39:23 has no hits.

BS13015.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:08 Download gff for BS13015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-PA 695..1458 17..780 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:38:44 Download gff for BS13015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 771..1536 15..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:16 Download gff for BS13015.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 771..1536 15..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:16 Download gff for BS13015.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4539405..4540031 15..641 100 <- Plus
3L 4540085..4540223 642..780 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:38:44 Download gff for BS13015.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4539405..4540031 15..641 100 <- Plus
arm_3L 4540085..4540223 642..780 98   Plus

BS13015.5prime Sequence

756 bp (697 high quality bases) assembled on 2006-10-13

> BS13015.5prime
GAAGTTATCAGTCGACATGAGTGCTCCAAAAGGGGACGGAAACTTAGTTC
CCACAGTCAGAGAAGTGCAGCAAAAGTTTGCCGACATCCTGGGCCATGGC
AACGATATAACCTGGGATCTAATATCGTCGGGTCAAGAAAACATATTGAA
GGCAAAGCTGTCTCTGCTGAATTTCGATTCTAACATGTTTCATGCGATCT
GGAGTTATAGAAAATACTCCAAAGGGCAGTCACTCACGTCTTTATTTTTT
GTGATGGTTGTCAATAATGTATATGATCCCAAGCTGGCCGAAGAAAGTAG
ATCCTGGCGCCTGTATCCGGTGTTTCGATGCCGACGATGCGTGGATGAAA
CTGGACATTCCAGCAACATTGACTGTTGCATGTCATATGTGTCACAGTAC
TCAATGTCTGATTCCTGGAACCGATTTGTGACCCATACGGGGTTTGCCGC
AGGTCTAATGGTCACCCCGTATCTTGGAGTTTACAAGCAAACCGATGGTC
GCGTTGAGCTAAAAACGTATACTACCACTCAGATATGGCACCCAAATAAG
AAAGATATACCAATAACACCCGAATCGTTGAAAAAAGCATCCAGTGTGAC
TAATAAACTTAGAAAAATCATCATACATTCAGTTCCATTTCTGGTTTATC
CTGAAGAGGTTTTCGACTTCTGCGCCAGTGAAAAGATGCTTTCGTCGATT
TTGAATCCTCATAATTCTACACAATCTGGTGATGTGGCTGGTCTATCCGA
TTCCTT

BS13015.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 1458 CG32243-RA 1..740 17..756 3675 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-RA 1639 CG32243-RA 77..816 17..756 3685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4540295..4540654 703..344 1800 100 Minus
3L 28110227 3L 4540713..4540847 344..210 675 100 Minus
3L 28110227 3L 4541065..4541168 120..17 520 100 Minus
3L 28110227 3L 4540922..4541011 210..121 450 100 Minus
3L 28110227 3L 4540178..4540231 756..703 255 98.1 Minus
Blast to na_te.dros performed on 2015-02-12 16:32:57 has no hits.

BS13015.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:09 Download gff for BS13015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-PA 1..740 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:06:49 Download gff for BS13015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..816 17..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:40:13 Download gff for BS13015.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32243-RA 77..816 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:40:13 Download gff for BS13015.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4540178..4540230 704..756 98 <- Minus
3L 4540295..4540653 345..703 100 <- Minus
3L 4540713..4540847 210..344 100 <- Minus
3L 4540923..4541011 121..209 100 <- Minus
3L 4541065..4541168 17..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:06:49 Download gff for BS13015.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4540713..4540847 210..344 100 <- Minus
arm_3L 4540923..4541011 121..209 100 <- Minus
arm_3L 4541065..4541168 17..120 100   Minus
arm_3L 4540178..4540230 704..756 98 <- Minus
arm_3L 4540295..4540653 345..703 100 <- Minus

BS13015.pep Sequence

Translation from 16 to 1473

> BS13015.pep
MSAPKGDGNLVPTVREVQQKFADILGHGNDITWDLISSGQENILKAKLSL
LNFDSNMFHAIWSYRKYSKGQSLTSLFFVMVVNNVYDPKLAEESRSWRLY
PVFRCRRCVDETGHSSNIDCCMSYVSQYSMSDSWNRFVTHTGFAAGLMVT
PYLGVYKQTDGRVELKTYTTTQIWHPNKKDIPITPESLKKASSVTNKLRK
IIIHSVPFLVYPEEVFDFCASEKMLSSILNPHSSTQSGDVAGLSDSLVLF
TNNLYNSRLESLMNNNNNDPSIFVNQQRSAWDKIARESFKIEGNVNLIRC
CNGVPSIPKLDKIFQPIDSKIKKSKKVVEAEKPENTPSDLPEIEIDLSIK
VKGQEINLREYGTQLKKHIASSESFDILISRMSEHLEVDTFKLIMALTQT
FVETVREEMCQMLKYYFPTESILYQIILCISKHHPKWDFNEIEEHSSDIL
RRVRMFFVSTGPNPYAEFLKKCEVCPGYYDICKST*

BS13015.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32243-PA 485 CG32243-PA 1..485 1..485 2553 100 Plus
pst-PG 682 CG8588-PG 6..201 6..170 288 33.7 Plus
pst-PE 682 CG8588-PE 6..201 6..170 288 33.7 Plus
pst-PF 707 CG8588-PF 6..226 6..170 252 29.9 Plus
pst-PG 682 CG8588-PG 546..680 348..482 251 34.8 Plus
pst-PE 682 CG8588-PE 546..680 348..482 251 34.8 Plus
pst-PF 707 CG8588-PF 571..705 348..482 251 34.8 Plus
CG7730-PC 581 CG7730-PC 339..578 239..481 199 26.6 Plus