Clone Sequence Records
BS13016.3prime Sequence
684 bp (639 high quality bases) assembled on 2006-10-13
> BS13016.3prime
ATGGTCTAGAAAGCTTTTAGTGGCGGAACTTGCTGGGATTGGGGCGGGCT
CGGCGGACGGCGGACTCCGGAGAGCCGTATGCGATGGCGTGGCTGGTAGC
AGATCCGCCCTCGCCGGTGCTGAAAGAGTTGGCAATGGCAATGGCGCCGC
CGTTGGTGCCTCCGAAATCGATTGGGAAAAAGGTGCCAGCGGGCAGAGGG
GCGGCGGGCTTCTTGGAGGGCTTGCCGGCAGGAGAAGCAGCCTTCACAGG
CTTCTTGTCTGCGGGACGACGGGCGTTGGGCACACGCACAGGGTTAATGG
GTTTTACGGGCACGGACAGCTCCTCCTCGTCCTCCTCAACGTCGTCGGCC
ACAGCGTTCTCTACTTCCTCCTCGTCTTCAATGGCGGCGGCCTGGGGCTC
CTCCTCCTCCTGATCCAGCTCGACGATCACCTTCTTCTTGGCGGGCAGGT
AGCGGTTCGCTGGCACCACGGCGGCCACTGGAGCAATGGGAGCGGGGGCT
GGAAGCTCGGCCTCGGCAACGGGCAGGGGAACTGATTCCTCCTCAGCAGC
AGAGCCGACGGAGGCTTCCTCGGCGGCGAAGTTGAAGTCTCGTGGAACCT
TAACGGCGTCGTCTGCGGCCTCGGGCTCGGGTTCAGCCTCTGACTCGGCT
TGGGGTGCTACGTCGGAATTGGTGGCCACCTGTA
BS13016.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-PA | 1041 | CG11370-RA | 374..1041 | 684..17 | 3290 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RB | 1308 | CG11370-RB | 509..1176 | 684..17 | 3310 | 99.7 | Minus |
CG11370-RA | 1323 | CG11370-RA | 524..1191 | 684..17 | 3310 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:41:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22712861..22713528 | 684..17 | 3310 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:41:25 has no hits.
BS13016.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:09 Download gff for
BS13016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-PA | 375..1041 | 17..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:33 Download gff for
BS13016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 525..1196 | 11..683 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:01 Download gff for
BS13016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 525..1196 | 11..683 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:01 Download gff for
BS13016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22712862..22713533 | 11..683 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:33 Download gff for
BS13016.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22705962..22706633 | 11..683 | 99 | | Minus |
BS13016.5prime Sequence
678 bp (668 high quality bases) assembled on 2006-10-13
> BS13016.5prime
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCC
BS13016.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-PA | 1041 | CG11370-RA | 1..662 | 17..678 | 3310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1323 | CG11370-RA | 141..812 | 8..678 | 3335 | 99.9 | Plus |
CG11370-RB | 1308 | CG11370-RB | 141..797 | 8..678 | 3100 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22712737..22713149 | 266..678 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 22712502..22712672 | 96..266 | 855 | 100 | Plus |
3L | 28110227 | 3L | 22712301..22712384 | 13..96 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:03:12 has no hits.
BS13016.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:10 Download gff for
BS13016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-PA | 1..662 | 17..678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:15 Download gff for
BS13016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 136..812 | 1..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:06 Download gff for
BS13016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 136..812 | 1..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:06 Download gff for
BS13016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22712290..22712383 | 1..95 | 95 | -> | Plus |
3L | 22712502..22712672 | 96..266 | 100 | -> | Plus |
3L | 22712738..22713149 | 267..678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:15 Download gff for
BS13016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22705390..22705483 | 1..95 | 95 | -> | Plus |
arm_3L | 22705602..22705772 | 96..266 | 100 | -> | Plus |
arm_3L | 22705838..22706249 | 267..678 | 100 | | Plus |
BS13016.complete Sequence
1073 bp assembled on 2006-11-01
GenBank Submission: FJ637355
> BS13016.complete
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGAC
GAGGAGGAAGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGA
GGAGCTGTCCGTGCCCGTAAAACCCATTAACCCTGTGCGTGTGCCCAACG
CCCGTCGTCCCGCAGACAAGAAGCCTGTGAAGGCTGCTTCTCCTGCCGGC
AAGCCCTCCAAGAAGCCCGCCGCCCCTCTGCCCGCTGGCACCTTTTTCCC
AATCGATTTCGGAGGCACCAACGGCGGCGCCATTGCCATTGCCAACTCTT
TCAGCACCGGCGAGGGCGGATCTGCTACCAGCCACGCCATCGCATACGGC
TCTCCGGAGTCCGCCGTCCGCCGAGCCCGCCCCAATCCCAGCAAGTTCCG
CCACTAAAAGCTTTCTAGACCAT
BS13016.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1041 | CG11370-PA | 1..1041 | 17..1057 | 5190 | 99.9 | Plus |
CG11370-RB | 1026 | CG11370-PB | 1..1026 | 17..1057 | 4930 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-RA | 1323 | CG11370-RA | 147..1191 | 13..1057 | 5210 | 99.9 | Plus |
CG11370-RB | 1308 | CG11370-RB | 147..1176 | 13..1057 | 4950 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22712737..22713528 | 266..1057 | 3945 | 99.9 | Plus |
3L | 28110227 | 3L | 22712502..22712672 | 96..266 | 855 | 100 | Plus |
3L | 28110227 | 3L | 22712301..22712384 | 13..96 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:01:08 has no hits.
BS13016.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:47 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 1..1041 | 17..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:48 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 134..1194 | 1..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:27 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 151..1189 | 17..1055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:48 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 134..1194 | 1..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:31 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11370-RA | 151..1189 | 17..1055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:31 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22712305..22712383 | 17..95 | 100 | -> | Plus |
3L | 22712502..22712672 | 96..266 | 100 | -> | Plus |
3L | 22712738..22713526 | 267..1055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:27 Download gff for
BS13016.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22705405..22705483 | 17..95 | 100 | -> | Plus |
arm_3L | 22705602..22705772 | 96..266 | 100 | -> | Plus |
arm_3L | 22705838..22706626 | 267..1055 | 99 | | Plus |
BS13016.pep Sequence
Translation from 16 to 1056
> BS13016.pep
MKFCAAVALLLIAGIVASGDALPARKRMVYLQQPAAAEWYGSAPHQRFMY
MQYVQPGRTHARSTQAASALVAGETVATGTYLKDCNHAESDTSAEGVPAD
DVLAAAGAHGATSVAEAYPDQAPVVQVATNSDVAPQAESEAEPEPEAADD
AAKVPRDFNFAAEEASVGSAAEEESVPLPVAEAELPAPAPIAPVAAVVPA
NRYLPAKKKVIVELDQEEEEPQAAAIEDEEEVENAVADDVEEDEEELSVP
VKPINPVRVPNARRPADKKPVKAASPAGKPSKKPAAPLPAGTFFPIDFGG
TNGGAIAIANSFSTGEGGSATSHAIAYGSPESAVRRARPNPSKFRH*
BS13016.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11370-PA | 346 | CG11370-PA | 1..346 | 1..346 | 1756 | 100 | Plus |
CG11370-PB | 341 | CG11370-PB | 1..341 | 1..346 | 1707 | 98.6 | Plus |