Clone BS13016 Report

Search the DGRC for BS13016

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG11370-RA
Protein status:BS13016.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13016.3prime Sequence

684 bp (639 high quality bases) assembled on 2006-10-13

> BS13016.3prime
ATGGTCTAGAAAGCTTTTAGTGGCGGAACTTGCTGGGATTGGGGCGGGCT
CGGCGGACGGCGGACTCCGGAGAGCCGTATGCGATGGCGTGGCTGGTAGC
AGATCCGCCCTCGCCGGTGCTGAAAGAGTTGGCAATGGCAATGGCGCCGC
CGTTGGTGCCTCCGAAATCGATTGGGAAAAAGGTGCCAGCGGGCAGAGGG
GCGGCGGGCTTCTTGGAGGGCTTGCCGGCAGGAGAAGCAGCCTTCACAGG
CTTCTTGTCTGCGGGACGACGGGCGTTGGGCACACGCACAGGGTTAATGG
GTTTTACGGGCACGGACAGCTCCTCCTCGTCCTCCTCAACGTCGTCGGCC
ACAGCGTTCTCTACTTCCTCCTCGTCTTCAATGGCGGCGGCCTGGGGCTC
CTCCTCCTCCTGATCCAGCTCGACGATCACCTTCTTCTTGGCGGGCAGGT
AGCGGTTCGCTGGCACCACGGCGGCCACTGGAGCAATGGGAGCGGGGGCT
GGAAGCTCGGCCTCGGCAACGGGCAGGGGAACTGATTCCTCCTCAGCAGC
AGAGCCGACGGAGGCTTCCTCGGCGGCGAAGTTGAAGTCTCGTGGAACCT
TAACGGCGTCGTCTGCGGCCTCGGGCTCGGGTTCAGCCTCTGACTCGGCT
TGGGGTGCTACGTCGGAATTGGTGGCCACCTGTA

BS13016.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-PA 1041 CG11370-RA 374..1041 684..17 3290 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RB 1308 CG11370-RB 509..1176 684..17 3310 99.7 Minus
CG11370-RA 1323 CG11370-RA 524..1191 684..17 3310 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22712861..22713528 684..17 3310 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 18:41:25 has no hits.

BS13016.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:09 Download gff for BS13016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-PA 375..1041 17..683 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:33 Download gff for BS13016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 525..1196 11..683 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:01 Download gff for BS13016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 525..1196 11..683 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:01 Download gff for BS13016.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22712862..22713533 11..683 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:33 Download gff for BS13016.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22705962..22706633 11..683 99   Minus

BS13016.5prime Sequence

678 bp (668 high quality bases) assembled on 2006-10-13

> BS13016.5prime
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCC

BS13016.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-PA 1041 CG11370-RA 1..662 17..678 3310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1323 CG11370-RA 141..812 8..678 3335 99.9 Plus
CG11370-RB 1308 CG11370-RB 141..797 8..678 3100 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:03:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22712737..22713149 266..678 2065 100 Plus
3L 28110227 3L 22712502..22712672 96..266 855 100 Plus
3L 28110227 3L 22712301..22712384 13..96 420 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:03:12 has no hits.

BS13016.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:10 Download gff for BS13016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-PA 1..662 17..678 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:34:15 Download gff for BS13016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 136..812 1..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:06 Download gff for BS13016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 136..812 1..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:06 Download gff for BS13016.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22712290..22712383 1..95 95 -> Plus
3L 22712502..22712672 96..266 100 -> Plus
3L 22712738..22713149 267..678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:34:15 Download gff for BS13016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22705390..22705483 1..95 95 -> Plus
arm_3L 22705602..22705772 96..266 100 -> Plus
arm_3L 22705838..22706249 267..678 100   Plus

BS13016.complete Sequence

1073 bp assembled on 2006-11-01

GenBank Submission: FJ637355

> BS13016.complete
GAAGTTATCAGTCGACATGAAGTTCTGTGCTGCCGTGGCTCTGCTACTGA
TCGCCGGCATTGTGGCCAGCGGCGATGCCCTGCCCGCCAGGAAAAGAATG
GTCTACCTCCAGCAGCCCGCAGCAGCAGAGTGGTACGGATCCGCACCCCA
TCAGCGCTTCATGTATATGCAGTATGTCCAGCCCGGCCGCACCCACGCCC
GTTCCACCCAGGCAGCCAGTGCCCTCGTGGCCGGAGAGACCGTAGCCACC
GGAACCTACCTGAAGGATTGCAATCACGCAGAGTCTGATACTAGCGCCGA
GGGAGTCCCAGCTGACGATGTCCTCGCAGCCGCCGGAGCCCACGGCGCAA
CCTCCGTGGCCGAGGCTTATCCCGACCAAGCGCCAGTTGTACAGGTGGCC
ACCAATTCCGACGTAGCACCCCAAGCCGAGTCAGAGGCTGAACCCGAGCC
CGAGGCCGCAGACGACGCCGCTAAGGTTCCACGAGACTTCAACTTCGCCG
CCGAGGAAGCCTCCGTCGGCTCTGCTGCTGAGGAGGAATCAGTTCCCCTG
CCCGTTGCCGAGGCCGAGCTTCCAGCCCCCGCTCCCATTGCTCCAGTGGC
CGCCGTGGTGCCAGCGAACCGCTACCTGCCCGCCAAGAAGAAGGTGATCG
TCGAGCTGGATCAGGAGGAGGAGGAGCCCCAGGCCGCCGCCATTGAAGAC
GAGGAGGAAGTAGAGAACGCTGTGGCCGACGACGTTGAGGAGGACGAGGA
GGAGCTGTCCGTGCCCGTAAAACCCATTAACCCTGTGCGTGTGCCCAACG
CCCGTCGTCCCGCAGACAAGAAGCCTGTGAAGGCTGCTTCTCCTGCCGGC
AAGCCCTCCAAGAAGCCCGCCGCCCCTCTGCCCGCTGGCACCTTTTTCCC
AATCGATTTCGGAGGCACCAACGGCGGCGCCATTGCCATTGCCAACTCTT
TCAGCACCGGCGAGGGCGGATCTGCTACCAGCCACGCCATCGCATACGGC
TCTCCGGAGTCCGCCGTCCGCCGAGCCCGCCCCAATCCCAGCAAGTTCCG
CCACTAAAAGCTTTCTAGACCAT

BS13016.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1041 CG11370-PA 1..1041 17..1057 5190 99.9 Plus
CG11370-RB 1026 CG11370-PB 1..1026 17..1057 4930 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-RA 1323 CG11370-RA 147..1191 13..1057 5210 99.9 Plus
CG11370-RB 1308 CG11370-RB 147..1176 13..1057 4950 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22712737..22713528 266..1057 3945 99.9 Plus
3L 28110227 3L 22712502..22712672 96..266 855 100 Plus
3L 28110227 3L 22712301..22712384 13..96 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:01:08 has no hits.

BS13016.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:47 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 1..1041 17..1057 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:48 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 134..1194 1..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:27 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 151..1189 17..1055 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:48 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 134..1194 1..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:31 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
CG11370-RA 151..1189 17..1055 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:31 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22712305..22712383 17..95 100 -> Plus
3L 22712502..22712672 96..266 100 -> Plus
3L 22712738..22713526 267..1055 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:27 Download gff for BS13016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22705405..22705483 17..95 100 -> Plus
arm_3L 22705602..22705772 96..266 100 -> Plus
arm_3L 22705838..22706626 267..1055 99   Plus

BS13016.pep Sequence

Translation from 16 to 1056

> BS13016.pep
MKFCAAVALLLIAGIVASGDALPARKRMVYLQQPAAAEWYGSAPHQRFMY
MQYVQPGRTHARSTQAASALVAGETVATGTYLKDCNHAESDTSAEGVPAD
DVLAAAGAHGATSVAEAYPDQAPVVQVATNSDVAPQAESEAEPEPEAADD
AAKVPRDFNFAAEEASVGSAAEEESVPLPVAEAELPAPAPIAPVAAVVPA
NRYLPAKKKVIVELDQEEEEPQAAAIEDEEEVENAVADDVEEDEEELSVP
VKPINPVRVPNARRPADKKPVKAASPAGKPSKKPAAPLPAGTFFPIDFGG
TNGGAIAIANSFSTGEGGSATSHAIAYGSPESAVRRARPNPSKFRH*

BS13016.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11370-PA 346 CG11370-PA 1..346 1..346 1756 100 Plus
CG11370-PB 341 CG11370-PB 1..341 1..346 1707 98.6 Plus