Clone Sequence Records
BS13017.complete Sequence
1610 bp assembled on 2009-12-07
GenBank Submission: KX803095
> BS13017.complete
GAAGTTATCAGTCGACATGCAGCGCGTCATGCCGGCGTCCTGGAGCAGCG
GGGGCAGCCTGCTGCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTC
TTCTCACTGACCGCCGGCGTGGCCCTAATGAGCGTACTCTCCCGATTTCT
GCGACGTCGCAAGCCACCGCGTCCGCCTCGTCGAGCCAGGAAGTACACGG
GTCGGCGCAACCGCAACAGCATGCGCAGTCCAAACGATCTAATCTCGATA
GCCGGATCTAAGGCCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCACACT
GGCCTACTCGGATCGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTG
TATTGGGCGTACAAAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTG
ACGGCCCAACAGTTGGGCATGATGGGCATGGAGGCACTGGACACAGTGAT
CAACTTCTGGGAGGATGCCCTGGCGGCACACTACTCGCCCGGCGGTTTGC
CCGCCCTGTTGACCACGGCGGAGGACTCCGAGTTCTGTCGCGAGATCCAA
AACCTGCTGGAGATGGCCTACACGCTGCAGGAGCAGAGCGAACTGCTCTT
CCTGGACCAGCGATCGGTGCTGTTCCGCGAGGAGCATTCCATTGACGAGG
CCGAGGAGGAGGCGGGCGAGGCCGATGACGATCGGCGGTCACGCAAATCG
GGCAGCGTTCTCAGTCGCGCTGGTTCCGACCCGAACTTTGATTCCGCGGA
AAGCTTTGCTTCCGCTCTCGACCAGGTGGCGGATCTGCGTGAGTTCGATG
GCTTTATTGAGACCTCGTACGAAGAGTATCCGCTATTCCAGAGTGCACTG
AAGCATCACGATGAGTACACGGTGCCGTGTCGTACCATTCGGGCGGAGTT
GATGCACTGCAGCACCGATACCGAATACCTGGCCAAGCTGCACTGCGTTC
GGTTGGCCTTTCAGTTCCTCTTCAAGGATCCCGCTGTGGGCCAGTGGATC
TGCGATGCTGGTCGGCAGATTCTCACCGATCTGCTTTGTCTGGGCGATAA
GGATACCAAGGAGTTTCTTGTGGGCTACGAGGACATGGTGAACTATCTGC
ACGATAGCAACAACTGGCCCTGCATCCAAATGGAGCTGGAGCAGCGCAAT
GTCAAGGCGATGACCTTCTACGATATCTGTTTGGACTTCATTATCCTCGA
TTCGTTCAAGGATCTTGATGCTCCGCCTGCCAGCGTAACAGCGGTTGTCC
AAAATCGCTGGCTATCCAACGGATTCAAAGAGACGGCATTAACAACAGCC
GTGTGGTCGGTGCTGAAGGCAAAGAAACGGATGCTTAAGTTCCCCAACGG
GTTCATGTCCCACTTTTACGTGATATCCGAGCAGATATCACCGCTAATGG
CCTGGGGCTTCTTTGGACCCAACGAGAACTTGCGAGACATCTGCCACTAC
TTCCGAGAGGAGCTGCTCGCCTTTCTGGGCGACATCTTTAGCTTCCAAAA
GAGCCGCTTCACGACCATCGAGGAATTCTCGCAGGATGTGCTGCAGCACA
TGCAGACGCGCGTCAACAACATTGGCGTGAAATTTAGCCAGTAAAAGCTT
TCTAGACCAT
BS13017.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-RC | 1578 | CG12125-PC | 1..1578 | 17..1594 | 7860 | 99.9 | Plus |
| CG12125-RB | 1578 | CG12125-PB | 1..1578 | 17..1594 | 7860 | 99.9 | Plus |
| CG12125-RA | 1578 | CG12125-PA | 1..1578 | 17..1594 | 7860 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-RC | 3773 | CG12125-RC | 1474..3051 | 17..1594 | 7860 | 99.9 | Plus |
| CG12125-RB | 2286 | CG12125-RB | 455..2032 | 17..1594 | 7860 | 99.9 | Plus |
| CG12125-RA | 2754 | CG12125-RA | 455..2032 | 17..1594 | 7860 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8435017..8436213 | 1286..90 | 5970 | 99.9 | Minus |
| X | 23542271 | X | 8434645..8434954 | 1594..1285 | 1535 | 99.7 | Minus |
| X | 23542271 | X | 8436271..8436347 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:07:37 has no hits.
BS13017.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:54 Download gff for
BS13017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RB | 454..2029 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:35 Download gff for
BS13017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 455..2030 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:23 Download gff for
BS13017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 454..2029 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:33 Download gff for
BS13017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 455..2030 | 17..1592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:33 Download gff for
BS13017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8434647..8434953 | 1286..1592 | 99 | <- | Minus |
| X | 8435018..8436211 | 92..1285 | 99 | <- | Minus |
| X | 8436273..8436347 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:35 Download gff for
BS13017.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8328680..8328986 | 1286..1592 | 99 | <- | Minus |
| arm_X | 8329051..8330244 | 92..1285 | 99 | <- | Minus |
| arm_X | 8330306..8330380 | 17..91 | 100 | | Minus |
BS13017.3prime Sequence
653 bp (652 high quality bases) assembled on 2006-10-13
> BS13017.3prime
ATGGTCTAGAAAGCTTTTACTGGCTAAATTTCACGCCAATGTTGTTGACG
CGCGTCTGCATGTGCTGCAGCACATCCTGCGAGAATTCCTCGATGGTCGT
GAAGCGGCTCTTTTGGAAGCTAAAGATGTCGCCCAGAAAGGCGAGCAGCT
CCTCTCGGAAGTAGTGGCAGATGTCTCGCAAGTTCTCGTTGGGTCCAAAG
AAGCCCCAGGCCATTAGCGGTGATATCTGCTCGGATATCACGTAAAAGTG
GGACATGAACCCGTTGGGGAACTTAAGCATCCGTTTCTTTGCCTTCAGCA
CCGACCACACGGCTGTTGTTAATGCCGTCTCTTTGAATCCGTTGGATAGC
CAGCGATTTTGGACAACCGCTGTTACGCTGGCAGGCGGAGCATCAAGATC
CTTGAACGAATCGAGGATAATGAAGTCCAAACAGATATCGTAGAAGGTCA
TCGCCTTGACATTGCGCTGCTCCAGCTCCATTTGGATGCAGGGCCAGTTG
TTGCTATCGTGCAGATAGTTCACCATGTCCTCGTAGCCCACAAGAAACTC
CTTGGTATCCTTATCGCCCAGACAAAGCAGATCGGTGAGAATCTGCCGAC
CAGCATCGCAGATCCACTGGCCCACAGCGGGATCCTTGAAGAGGAACTGA
AAG
BS13017.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-PA | 1578 | CG12125-RA | 942..1578 | 653..17 | 3160 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-RC | 3773 | CG12125-RC | 2415..3051 | 653..17 | 3170 | 99.8 | Minus |
| CG12125-RB | 2286 | CG12125-RB | 1396..2032 | 653..17 | 3170 | 99.8 | Minus |
| CG12125-RA | 2754 | CG12125-RA | 1396..2032 | 653..17 | 3170 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8435017..8435345 | 325..653 | 1645 | 100 | Plus |
| X | 23542271 | X | 8434645..8434954 | 17..326 | 1535 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:42:01 has no hits.
BS13017.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:11 Download gff for
BS13017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-PA | 942..1578 | 17..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:49 Download gff for
BS13017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 1396..2041 | 9..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:04 Download gff for
BS13017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 1396..2041 | 9..653 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:04 Download gff for
BS13017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8434636..8434953 | 9..325 | 98 | <- | Plus |
| X | 8435018..8435345 | 326..653 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:49 Download gff for
BS13017.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8328669..8328986 | 9..325 | 98 | <- | Plus |
| arm_X | 8329051..8329378 | 326..653 | 100 | | Plus |
BS13017.5prime Sequence
774 bp (721 high quality bases) assembled on 2006-10-13
> BS13017.5prime
GAAGTTATCAGTCGACATGCAGCGCGTCATGCCGGCGTCCTGGAGCAGCG
GGGGCAGCCTGCTGCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTC
TTCTCACTGACCGCCGGCGTGGCCCTAATGAGCGTACTCTCCCGATTTCT
GCGACGTCGCAAGCCACCGCGTCCGCCTCGTCGAGCCAGGAAGTACACGG
GTCGGCGCAACCGCAACAGCATGCGCAGTCCAAACGATCTAATCTCGATA
GCCGGATCTAAGGCCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCACACT
GGCCTACTCGGATCGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTG
TATTGGGCGTACAAAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTG
ACGGCCCAACAGTTGGGCATGATGGGCATGGAGGCACTGGACACAGTGAT
CAACTTCTGGGAGGATGCCCTGGCGGCACACTACTCGCCCGGCGGTTTGC
CCGCCCTGTTGACCACGGCGGAGGACTCCGAGTTCTGTCGCGAGATCCAA
AACCTGCTGGAGATGGCCTACACGCTGCAGGAGCAGAGCGAACTGCTCTT
CCTGGACCAGCGATCGGTGCTGTTCCGCGAGGAGCATTCCATTGACGAGG
CCGAGGAGGAGGCGGGCGAGGCCGATGACGATCGGCGGTCACGCAAATCG
GGCAGCGTTCTCAGTCGCGCTGGTTCCGACCCGAACTTTGATTCCGCGGA
AAGCTTTGCTTCCGCTCTCGACCA
BS13017.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:16:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-PA | 1578 | CG12125-RA | 1..758 | 17..774 | 3765 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-RC | 3773 | CG12125-RC | 1474..2231 | 17..774 | 3775 | 99.9 | Plus |
| CG12125-RB | 2286 | CG12125-RB | 455..1212 | 17..774 | 3775 | 99.9 | Plus |
| CG12125-RA | 2754 | CG12125-RA | 455..1212 | 17..774 | 3775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8435529..8436213 | 774..90 | 3410 | 99.9 | Minus |
| X | 23542271 | X | 8436271..8436347 | 93..17 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:47:42 has no hits.
BS13017.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:11 Download gff for
BS13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-PA | 1..757 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:57 Download gff for
BS13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 451..1211 | 9..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:17 Download gff for
BS13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 451..1211 | 9..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:17 Download gff for
BS13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8436273..8436351 | 9..91 | 95 | | Minus |
| X | 8435530..8436211 | 92..773 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:57 Download gff for
BS13017.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8329563..8330244 | 92..773 | 99 | <- | Minus |
| arm_X | 8330306..8330384 | 9..91 | 95 | | Minus |
BS13017.pep Sequence
Translation from 16 to 1593
> BS13017.pep
MQRVMPASWSSGGSLLPFRVSTTTKVVLFSLTAGVALMSVLSRFLRRRKP
PRPPRRARKYTGRRNRNSMRSPNDLISIAGSKASARSGSPVGSTLAYSDR
LSMASGSIGVGVLGVQNAGPGSSVVTQLTAQQLGMMGMEALDTVINFWED
ALAAHYSPGGLPALLTTAEDSEFCREIQNLLEMAYTLQEQSELLFLDQRS
VLFREEHSIDEAEEEAGEADDDRRSRKSGSVLSRAGSDPNFDSAESFASA
LDQVADLREFDGFIETSYEEYPLFQSALKHHDEYTVPCRTIRAELMHCST
DTEYLAKLHCVRLAFQFLFKDPAVGQWICDAGRQILTDLLCLGDKDTKEF
LVGYEDMVNYLHDSNNWPCIQMELEQRNVKAMTFYDICLDFIILDSFKDL
DAPPASVTAVVQNRWLSNGFKETALTTAVWSVLKAKKRMLKFPNGFMSHF
YVISEQISPLMAWGFFGPNENLRDICHYFREELLAFLGDIFSFQKSRFTT
IEEFSQDVLQHMQTRVNNIGVKFSQ*
BS13017.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-PC | 525 | CG12125-PC | 1..525 | 1..525 | 2717 | 100 | Plus |
| CG12125-PB | 525 | CG12125-PB | 1..525 | 1..525 | 2717 | 100 | Plus |
| CG12125-PA | 525 | CG12125-PA | 1..525 | 1..525 | 2717 | 100 | Plus |
