Clone Sequence Records
BS13019.complete Sequence
1265 bp assembled on 2009-12-07
GenBank Submission: KX802409
> BS13019.complete
GAAGTTATCAGTCGACATGACAGAAGCGGAAATTTGCAAACTATGCAAGG
ATAACCGAGCAATTGAGATCGATCTCGAGAAGCCCAAATTCAAATCGGCC
AATAAACTGCTGCAAAGACTTTTCGATTGGTACAAAATTGATGCTGCTAT
CCTGGGGGAAAATTACTGCATTTGCGAGCCCTGCTTTGGAGAGACTTTGC
GCATAAGCGAATCCCTGGAGAAGTGGGGCACGGCCCAGGACGAGTTTCAC
CGGAGGCCCATCGAAATAGACGACTCCACTGCATTTCAGATCAAGTTGGA
GGTGACATCAAACAAAGAAGAGGTAGAAACGGAAAAGAATGATGAGGAGA
ATTCTTTCGATCAGCATATCGCGGAGCCAGTGAAGGAAGATCCATTGGAA
AAAAACGAGCATATGGAGATCGTAGTCGAAGAATCTTTGAAAACCGCGTC
CGTGGATTTCTTCAGCGTGGGATTGTCACGCGATGGCTTGGCAGTCACCA
AGTTCTTCAAGGACAAGACCCAAGCCACTCGGATGCTGTGCACCTGTTGC
GGCCATGTGCTCGAAATCCTGACCCACATACGCATGCATTCTTGTAAACC
CCGCCCGAATCCGGTCTACTATTGCCGCGATTGTGGTTCAGAGTTCCACA
AACTACACGAACTACATGAGCACATGAAGACGATGAAACACAACAAGACC
ATGTGCGGCGCAAAGGATTTGGAATTTCTGTGCCTCAGATGCAACCAGAT
ATTCCCACGCTATTTCGACGTTATCCGCCACGAGAACAGCGTTCACAATG
TATCCGATTTCATCTGCGTGGAGTGCAACATGTCCTTCGCTAACCAAGGA
TCCTACAGGAGGCACACGAGGAGCCATAAAGTCAAATTCACGCAGCAGCG
ATTTTATGAGTGCCCATATAAGGACTGCACCTCAAGTTATCGAGTGTGGG
CGCGCTTAATGTCGCACATGAGTTCCCACGGCCTCTTTTCTGGATTCAAA
AGCAAAGTGCCGTCTACCCAACAGGAACGACGTCTTCTGGAGGGCAAGTT
TATGACGCTGGACCCCATGAAACGGGTTGAACCCGATCGCCGAAAGTTGC
CATACCGCAAGAAAAGCTTTTACGCTAAGGCAGATTTCCCGGAATCCCCG
ACGAAATGTACCAACGGAGGAGAGTTCATCAGCCTGCCCAAGAAAATTTC
CCTGCAGAAGGGAAAATACATCAATCTTTCGGACAATTCAAGACCTTAGA
AGCTTTCTAGACCAT
BS13019.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1233 | CG6215-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1585 | CG6215-RA | 70..1302 | 17..1249 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15817232..15818338 | 143..1249 | 5535 | 100 | Plus |
| 3L | 28110227 | 3L | 15817048..15817174 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:48:28 has no hits.
BS13019.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:34 Download gff for
BS13019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 56..1288 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:23 Download gff for
BS13019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 70..1302 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:39 Download gff for
BS13019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 56..1288 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:15 Download gff for
BS13019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 70..1302 | 17..1249 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:15 Download gff for
BS13019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15817048..15817173 | 17..142 | 100 | -> | Plus |
| 3L | 15817232..15818338 | 143..1249 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:23 Download gff for
BS13019.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15810148..15810273 | 17..142 | 100 | -> | Plus |
| arm_3L | 15810332..15811438 | 143..1249 | 100 | | Plus |
BS13019.5prime Sequence
615 bp (614 high quality bases) assembled on 2006-10-13
> BS13019.5prime
GAAGTTATCAGTCGACATGACAGAAGCGGAAATTTGCAAACTATGCAAGG
ATAACCGAGCAATTGAGATCGATCTCGAGAAGCCCAAATTCAAATCGGCC
AATAAACTGCTGCAAAGACTTTTCGATTGGTACAAAATTGATGCTGCTAT
CCTGGGGGAAAATTACTGCATTTGCGAGCCCTGCTTTGGAGAGACTTTGC
GCATAAGCGAATCCCTGGAGAAGTGGGGCACGGCCCAGGACGAGTTTCAC
CGGAGGCCCATCGAAATAGACGACTCCACTGCATTTCAGATCAAGTTGGA
GGTGACATCAAACAAAGAAGAGGTAGAAACGGAAAAGAATGATGAGGAGA
ATTCTTTCGATCAGCATATCGCGGAGCCAGTGAAGGAAGATCCATTGGAA
AAAAACGAGCATATGGAGATCGTAGTCGAAGAATCTTTGAAAACCGCGTC
CGTGGATTTCTTCAGCGTGGGATTGTCACGCGATGGCTTGGCAGTCACCA
AGTTCTTCAAGGACAAGACCCAAGCCACTCGGATGCTGTGCACCTGTTGC
GGCCATGTGCTCGAAATCCTGACCCACATACGCATGCATTCTTGTAAACC
CCGCCCGAATCCGGG
BS13019.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6215-PA | 1233 | CkIIalpha-i1-RA | 1..598 | 17..614 | 2990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1585 | CG6215-RA | 70..667 | 17..614 | 2990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15817232..15817703 | 143..614 | 2360 | 100 | Plus |
| 3L | 28110227 | 3L | 15817048..15817174 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:09:17 has no hits.
BS13019.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:12 Download gff for
BS13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6215-PA | 1..598 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:18:57 Download gff for
BS13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 55..667 | 1..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:50 Download gff for
BS13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 55..667 | 1..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:50 Download gff for
BS13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15817033..15817173 | 1..142 | 96 | -> | Plus |
| 3L | 15817232..15817703 | 143..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:18:57 Download gff for
BS13019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15810133..15810273 | 1..142 | 96 | -> | Plus |
| arm_3L | 15810332..15810803 | 143..615 | 99 | | Plus |
BS13019.pep Sequence
Translation from 16 to 1248
> BS13019.pep
MTEAEICKLCKDNRAIEIDLEKPKFKSANKLLQRLFDWYKIDAAILGENY
CICEPCFGETLRISESLEKWGTAQDEFHRRPIEIDDSTAFQIKLEVTSNK
EEVETEKNDEENSFDQHIAEPVKEDPLEKNEHMEIVVEESLKTASVDFFS
VGLSRDGLAVTKFFKDKTQATRMLCTCCGHVLEILTHIRMHSCKPRPNPV
YYCRDCGSEFHKLHELHEHMKTMKHNKTMCGAKDLEFLCLRCNQIFPRYF
DVIRHENSVHNVSDFICVECNMSFANQGSYRRHTRSHKVKFTQQRFYECP
YKDCTSSYRVWARLMSHMSSHGLFSGFKSKVPSTQQERRLLEGKFMTLDP
MKRVEPDRRKLPYRKKSFYAKADFPESPTKCTNGGEFISLPKKISLQKGK
YINLSDNSRP*
BS13019.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-PA | 410 | CG6215-PA | 1..410 | 1..410 | 2218 | 100 | Plus |
| CG1792-PA | 372 | CG1792-PA | 53..332 | 52..322 | 162 | 24.7 | Plus |
