Clone BS13021 Report

Search the DGRC for BS13021

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG7239-RA
Protein status:BS13021.pep: full length peptide match
Sequenced Size:1412

Clone Sequence Records

BS13021.3prime Sequence

892 bp (690 high quality bases) assembled on 2006-10-13

> BS13021.3prime
ATGGTCTAGAAAGCTTTCACTGCGGCCGCTGGGCCGTAGGATGCTGATGC
TGCTTCTGCAGCTGAAGGACGTGGCTCAGAATCTGCGCCTGCTGCTCAAG
ACACTTGGGGAAGAAGGTCTGCATGAGGTCGACCTTGCGTTCCTCCAGCT
CCAGTCGCTGCCGACATATCTTGGTTTGTTCGTAGAGCAGCTGGTTCTTT
CGCCGAACTTCCTCCATGTAGAGCGCCTCCAGCGAGTCTGCGTGTGGGGG
ATTCACAGATCCGAATGGACGACCGCGCTTCCGTGGCACAGGGACGGGGG
AGGCGCCAACGACGGCGTTGTTGGTGGTCGAAACTGGAGCTGCAGCCGGA
ACCGATGCCGATACCTGTGCGGGCACCGGCGCTGGCATGCCTCCGTTTGC
GTTTGTGGCCACGCTGATGGTGTTATTGCTGCTATTGATATAGGCTACCG
CCGTTATGGGCTGATGGTTGACGGTCGATGTGGCCGCAGTGCTAATAACG
CTGTTGTTATTGAATTGAGCCGGCTGCTGCTGAAATTGCGACTCATAGTT
TGTTTGGAACTGCTGCTGTTGTTGCTGCTGCTGCTGCAGTTGTTGCTGCT
GCTGTGGCGTCTGCAGCTCGAGCAGCTGAGCCGGCTTCGGCTGGGGAATA
CTGTTGCCACTGCTCCTGAAAGGGAATGGAGCGGTACTCATCGTCCTCGT
ACTCCTGCTTGACCACCTCGTCATACTGGTCCGTAAACAGCTCCGTGGTG
AAGCTAACTCCGCCGCTGGTGTTGTTGTTGTGGGTGCTGCCGTGATTGCT
ATTGCTGCTGCTATTGTAATAAGTGGGAGTGCTTGGCTCACTGGCCAGTC
CCAAGCCTTGCTTGCTGCTGCTGTTGAAACGATTGCTGCTGG

BS13021.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 1380 CG7239-RA 508..1380 891..17 4095 98.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1752 CG7239-RA 693..1566 891..16 4210 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802971..5803844 891..16 4160 98.9 Minus
Blast to na_te.dros performed 2015-02-12 04:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6451..6936 889..406 310 57.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2656 891..561 237 56.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6956 817..583 236 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..7089 817..487 211 56.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7196 891..413 201 55.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2910 891..314 198 55 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2687 811..414 178 54.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2847 817..413 171 55.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..2874 889..314 167 53 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6897 891..746 164 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6899 891..765 161 62.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2776..2832 818..762 159 75.4 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3287..3345 820..762 124 67.8 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 808..753 119 73.2 Minus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 808..753 119 73.2 Minus
BS 5142 BS BS 5142bp 2023..2074 817..763 115 70.9 Minus
invader2 5124 invader2 INVADER2 5124bp 656..710 807..753 113 67.3 Minus
roo 9092 roo DM_ROO 9092bp 1029..1105 97..20 108 61.5 Minus

BS13021.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:14 Download gff for BS13021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-PA 506..1380 17..892 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:57 Download gff for BS13021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 691..1568 12..892 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:07:15 Download gff for BS13021.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 691..1568 12..892 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:07:15 Download gff for BS13021.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5802969..5803846 12..892 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:57 Download gff for BS13021.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802969..5803846 12..892 98   Minus

BS13021.5prime Sequence

759 bp (701 high quality bases) assembled on 2006-10-13

> BS13021.5prime
GAAGTTATCAGTCGACATGGACTACGAGAAGCTGGCGTTGAACGCGGGCG
GAAGCGGCAGCGGTGCCGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAG
CTGCTCGATGGCAGGGGCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAG
CGAGGAGGAGCGCCTGTACGAGATCTGGGGACGCGACAACTGGCGCCTGA
CGCGCACCGGCAAGAACACCATCTTCTTTGGCCGGTGGGCCGAGGAACTG
CGCGACCGGTTCGCCGTGGACGTGAAGCCCGAGGAGATCCAGATGAAGGT
CAACCAGACCAGGGCCAAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGG
ATCCTTCGAGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGC
ATCCTGAAGAACCTGCACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGA
GGCGCTGCTCAACAACCGCGACATGACACCGCCCCGGGATGATGCGTCCG
CAGAGCAGTTGCAGCAGCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAG
CAGCAAGGCTTGGGACTGGCCAGTGAGCCAAGCACTGCCACCTATTACAA
TAGCAGCAGCAATAGCAATCACGGCAGCAGCCACAACAACAACACCAGCG
GCGGAGTTAGCTTCAACACGGAGCTGTTTACGGACCAGTATGACGAGGTG
GTCAAGCAGGAGTACGAAGACGATGAGTACCGCTCCATTCCCTTTCAGGA
GCAGTTGCA

BS13021.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 1380 CG7239-RA 1..743 17..759 3690 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1752 CG7239-RA 186..928 17..759 3700 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802770..5803206 323..759 2170 99.8 Plus
2L 23513712 2L 5802405..5802713 17..325 1545 100 Plus
Blast to na_te.dros performed 2015-02-10 22:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2485 504..675 246 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2522 502..669 245 63.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6857 512..649 243 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..6915 502..668 238 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6897 502..668 235 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2284..2441 494..654 229 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6822 597..668 207 76.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6785 586..652 200 77.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2832 580..652 176 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6839 539..652 168 64.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3345 515..652 159 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2422 598..668 157 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2745..2989 392..644 140 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2360 602..654 139 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2546 394..642 133 57.4 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 606..661 119 73.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 606..661 119 73.2 Plus
invader2 5124 invader2 INVADER2 5124bp 656..725 607..675 113 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1602 598..647 112 72 Plus

BS13021.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:14 Download gff for BS13021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-PA 1..742 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:53:51 Download gff for BS13021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 176..927 3..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:32 Download gff for BS13021.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 176..927 3..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:32 Download gff for BS13021.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5802395..5802712 3..324 98 -> Plus
2L 5802772..5803205 325..758 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:53:51 Download gff for BS13021.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802395..5802712 3..324 98 -> Plus
arm_2L 5802772..5803205 325..758 99   Plus

BS13021.complete Sequence

1412 bp assembled on 2009-12-07

GenBank Submission: KX806290

> BS13021.complete
GAAGTTATCAGTCGACATGGACTACGAGAAGCTGGCGTTGAACGCGGGCG
GAAGCGGCAGCGGTGCCGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAG
CTGCTCGATGGCAGGGGCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAG
CGAGGAGGAGCGCCTGTACGAGATCTGGGGACGCGACAACTGGCGCCTGA
CGCGCACCGGCAAGAACACCATCTTCTTTGGCCGGTGGGCCGAGGAACTG
CGCGACCGGTTCGCCGTGGACGTGAAGCCCGAGGAGATCCAGATGAAGGT
CAACCAGACCAGGGCCAAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGG
ATCCTTCGAGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGC
ATCCTGAAGAACCTGCACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGA
GGCGCTGCTCAACAACCGCGACATGACACCGCCCCGGGATGATGCGTCCG
CAGAGCAGTTGCAGCAGCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAG
CAGCAAGGCTTGGGACTGGCCAGTGAGCCAAGCACTGCCACCTATTACAA
TAGCAGCAGCAATAGCAATCACGGCAGCAGCCACAACAACAACACCAGCG
GCGGAGTTAGCTTCAACACGGAGCTGTTTACGGACCAGTATGACGAGGTG
GTCAAGCAGGAGTACGAGGACGATGAGTACCGCTCCATTCCCTTTCAGGA
GCAGTTGCAACAGTATTCCCCAGCCGAGCCGGCTCAGCTGCTCGAGCTGC
AGACGCCACAGCAGCAGCAACAACTGCAGCAGCAGCAGCAACAACAGCAG
CAGTTCCAAACAAACTATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATT
CAATAACAACAGCGTTATTAGCACTGCGGCCACATCGACCGTCAACCATC
AGCCCATAACGGCGGTAGCCTATATCAATAGCAGCAATAACACCATCAGC
GTGGCCACAAACGCAAACGGAGGCATGCCAGCGCCGGTGCCCGCACAGGT
ATCGGCATCGGTTCCGGCTGCAGCTCCAGTTTCGACCACCAACAACGCCG
TCGTTGGCGCCTCCCCCGTCCCTGTGCCACGGAAGCGCGGTCGTCCATTC
GGATCTGTGAATCCCCCACACGCAGACTCGCTGGAGGCGCTCTACATGGA
GGAAGTTCGGCGAAAGAACCAGCTGCTCTACGAACAAACCAAGATATGTC
GGCAGCGACTGGAGCTGGAGGAACGCAAGGTCGACCTCATGCAGACCTTC
TTCCCCAAGTGTCTTGAGCAGCAGGCGCAGATTCTGAGCCACGTCCTTCA
GCTGCAGAAGCAGCATCAGCATCCTACGGCCCAGCGGCCGCAGTGAAAGC
TTTCTAGACCAT

BS13021.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1380 CG7239-PA 1..1380 17..1396 6900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-RA 1752 CG7239-RA 186..1566 17..1397 6905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5802770..5803844 323..1397 5375 100 Plus
2L 23513712 2L 5802405..5802713 17..325 1545 100 Plus
Blast to na_te.dros performed 2014-11-28 02:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2656 504..852 310 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2910 502..1099 263 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7196 512..1000 255 55.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6956 586..830 252 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6754..7220 502..987 249 54.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2847 460..1000 237 55.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6692..7089 518..926 236 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2874 598..1099 182 52.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2760..2832 580..652 176 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2687 603..999 174 54.6 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3219..3345 515..652 159 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2745..2989 392..644 140 56.7 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7942..7994 606..661 119 73.2 Plus
TART-C 11124 TART-C TARTC 11124bp 9386..9438 606..661 119 73.2 Plus
invader2 5124 invader2 INVADER2 5124bp 656..725 607..675 113 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1602 598..647 112 72 Plus

BS13021.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:27 Download gff for BS13021.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 151..1529 17..1395 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:08 Download gff for BS13021.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 186..1564 17..1395 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:19 Download gff for BS13021.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 151..1529 17..1395 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:16 Download gff for BS13021.complete
Subject Subject Range Query Range Percent Splice Strand
CG7239-RA 186..1564 17..1395 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:16 Download gff for BS13021.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5802405..5802712 17..324 100 -> Plus
2L 5802772..5803842 325..1395 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:08 Download gff for BS13021.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5802405..5802712 17..324 100 -> Plus
arm_2L 5802772..5803842 325..1395 100   Plus

BS13021.pep Sequence

Translation from 16 to 1395

> BS13021.pep
MDYEKLALNAGGSGSGAEQDLGMCGGQELLDGRGKEKARRYWTPSEEERL
YEIWGRDNWRLTRTGKNTIFFGRWAEELRDRFAVDVKPEEIQMKVNQTRA
KFRQVKKQLQADPSSYATRWKKYDIINRILKNLHRPKNADPLPPEALLNN
RDMTPPRDDASAEQLQQQPQQQSVQQQQQQGLGLASEPSTATYYNSSSNS
NHGSSHNNNTSGGVSFNTELFTDQYDEVVKQEYEDDEYRSIPFQEQLQQY
SPAEPAQLLELQTPQQQQQLQQQQQQQQQFQTNYESQFQQQPAQFNNNSV
ISTAATSTVNHQPITAVAYINSSNNTISVATNANGGMPAPVPAQVSASVP
AAAPVSTTNNAVVGASPVPVPRKRGRPFGSVNPPHADSLEALYMEEVRRK
NQLLYEQTKICRQRLELEERKVDLMQTFFPKCLEQQAQILSHVLQLQKQH
QHPTAQRPQ*

BS13021.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7239-PA 459 CG7239-PA 1..459 1..459 2396 100 Plus
CG15740-PB 975 CG15740-PB 423..631 163..366 168 32.8 Plus
CG32532-PD 688 CG32532-PD 107..293 160..356 166 32 Plus
Smr-PG 3607 CG4013-PG 111..316 143..374 159 29.3 Plus