Clone BS13024 Report

Search the DGRC for BS13024

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG7330-RA
Protein status:BS13024.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13024.3prime Sequence

612 bp (612 high quality bases) assembled on 2006-10-13

> BS13024.3prime
ATGGTCTAGAAAGCTTTCATCGTGGTTGGGGCGCCGGCAGAGGTCCGACT
CCTGGACACGGCATCCTTTTGGCCAGGTGCTTGCACAGCGGCACATCCCG
CACAGCATCGCCGATGAACAGGGATAGAAGGTACCATTGCTTCATCCCAC
TGACGCCCGATTGCACTTTGTAGTTCCGCAACACTTCCGACCAGGCAGCA
TGTGGCTTTGCTTTTCCATCAGGAAAGCGGCCATCAGAACTGCCTGAGTA
TCTAGAGGCATGGACACGGCACGGCTCCTCCAGGATGCAGGCTTGGGGTC
CGAACTCACCCAGTATCTGTTTCTGGGCCAGTTCAGCATCAAGAGCCAGA
GGATGAGCCGTATCCCTTCTGGTGCGAGATCTATATGTACTGGGACTGAG
GGAGTAGGCCAACTTCTTGGCGAACTGGGACAGGCGGACGGATAGCACGA
TTACGGGGAAGCCGACCAGCTGGACGGGAAGCTCGAAAAGGGGATCGGAA
TTCTGGGCCAGGCCCTCCTCCACGAATTCCAGCAGAAGCACCAGCAGCAC
GCAGAGCGTTGGCACGAGAGCCACAGTGCAGATATACCGCAGATTCATGT
CGACTGATAACT

BS13024.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-PA 582 CG7330-RA 1..582 598..17 2910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 1166 CG7330-RB 123..706 599..16 2920 100 Minus
CG7330-RA 986 CG7330-RA 123..706 599..16 2920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18150677..18150891 390..176 1075 100 Minus
3L 28110227 3L 18149045..18149256 599..388 1060 100 Minus
3L 28110227 3L 18153186..18153347 177..16 810 100 Minus
Blast to na_te.dros performed on 2015-02-02 18:41:37 has no hits.

BS13024.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:16 Download gff for BS13024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-PA 1..582 17..598 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:34 Download gff for BS13024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..706 16..599 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:03 Download gff for BS13024.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..706 16..599 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:03 Download gff for BS13024.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18149045..18149253 391..599 100 -> Minus
3L 18150677..18150890 177..390 100 -> Minus
3L 18153187..18153347 16..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:34 Download gff for BS13024.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18142145..18142353 391..599 100 -> Minus
arm_3L 18143777..18143990 177..390 100 -> Minus
arm_3L 18146287..18146447 16..176 100   Minus

BS13024.5prime Sequence

612 bp (612 high quality bases) assembled on 2006-10-13

> BS13024.5prime
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGATGAAA
GCTTTCTAGACC

BS13024.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-PA 582 CG7330-RA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 1166 CG7330-RB 123..706 16..599 2920 100 Plus
CG7330-RA 986 CG7330-RA 123..706 16..599 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18150677..18150891 225..439 1075 100 Plus
3L 28110227 3L 18149045..18149256 16..227 1060 100 Plus
3L 28110227 3L 18153186..18153347 438..599 810 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:50:58 has no hits.

BS13024.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:16 Download gff for BS13024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-PA 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:22 Download gff for BS13024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..706 16..599 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:57 Download gff for BS13024.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 123..706 16..599 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:57 Download gff for BS13024.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18149045..18149253 16..224 100 -> Plus
3L 18150677..18150890 225..438 100 -> Plus
3L 18153187..18153347 439..599 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:22 Download gff for BS13024.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18142145..18142353 16..224 100 -> Plus
arm_3L 18143777..18143990 225..438 100 -> Plus
arm_3L 18146287..18146447 439..599 100   Plus

BS13024.complete Sequence

614 bp assembled on 2006-11-01

GenBank Submission: FJ637356

> BS13024.complete
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGATGAAA
GCTTTCTAGACCAT

BS13024.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 582 CG7330-PB 1..582 17..598 2910 100 Plus
CG7330-RA 582 CG7330-PA 1..582 17..598 2910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-RB 1166 CG7330-RB 123..706 16..599 2920 100 Plus
CG7330-RA 986 CG7330-RA 123..706 16..599 2920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18150677..18150891 225..439 1075 100 Plus
3L 28110227 3L 18149045..18149256 16..227 1060 100 Plus
3L 28110227 3L 18153186..18153347 438..599 810 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:07:56 has no hits.

BS13024.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:49 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 1..582 17..598 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:50 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 121..704 16..599 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:26 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 124..704 17..597 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:49 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 121..704 16..599 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:36 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
CG7330-RA 124..704 17..597 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:36 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18149046..18149253 17..224 100 -> Plus
3L 18150677..18150890 225..438 100 -> Plus
3L 18153187..18153345 439..597 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:26 Download gff for BS13024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18142146..18142353 17..224 100 -> Plus
arm_3L 18143777..18143990 225..438 100 -> Plus
arm_3L 18146287..18146445 439..597 100   Plus

BS13024.pep Sequence

Translation from 16 to 597

> BS13024.pep
MNLRYICTVALVPTLCVLLVLLLEFVEEGLAQNSDPLFELPVQLVGFPVI
VLSVRLSQFAKKLAYSLSPSTYRSRTRRDTAHPLALDAELAQKQILGEFG
PQACILEEPCRVHASRYSGSSDGRFPDGKAKPHAAWSEVLRNYKVQSGVS
GMKQWYLLSLFIGDAVRDVPLCKHLAKRMPCPGVGPLPAPQPR*

BS13024.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7330-PB 193 CG7330-PB 1..193 1..193 1007 100 Plus
CG7330-PA 193 CG7330-PA 1..193 1..193 1007 100 Plus