Clone Sequence Records
BS13024.3prime Sequence
612 bp (612 high quality bases) assembled on 2006-10-13
> BS13024.3prime
ATGGTCTAGAAAGCTTTCATCGTGGTTGGGGCGCCGGCAGAGGTCCGACT
CCTGGACACGGCATCCTTTTGGCCAGGTGCTTGCACAGCGGCACATCCCG
CACAGCATCGCCGATGAACAGGGATAGAAGGTACCATTGCTTCATCCCAC
TGACGCCCGATTGCACTTTGTAGTTCCGCAACACTTCCGACCAGGCAGCA
TGTGGCTTTGCTTTTCCATCAGGAAAGCGGCCATCAGAACTGCCTGAGTA
TCTAGAGGCATGGACACGGCACGGCTCCTCCAGGATGCAGGCTTGGGGTC
CGAACTCACCCAGTATCTGTTTCTGGGCCAGTTCAGCATCAAGAGCCAGA
GGATGAGCCGTATCCCTTCTGGTGCGAGATCTATATGTACTGGGACTGAG
GGAGTAGGCCAACTTCTTGGCGAACTGGGACAGGCGGACGGATAGCACGA
TTACGGGGAAGCCGACCAGCTGGACGGGAAGCTCGAAAAGGGGATCGGAA
TTCTGGGCCAGGCCCTCCTCCACGAATTCCAGCAGAAGCACCAGCAGCAC
GCAGAGCGTTGGCACGAGAGCCACAGTGCAGATATACCGCAGATTCATGT
CGACTGATAACT
BS13024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-PA | 582 | CG7330-RA | 1..582 | 598..17 | 2910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 1166 | CG7330-RB | 123..706 | 599..16 | 2920 | 100 | Minus |
CG7330-RA | 986 | CG7330-RA | 123..706 | 599..16 | 2920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18150677..18150891 | 390..176 | 1075 | 100 | Minus |
3L | 28110227 | 3L | 18149045..18149256 | 599..388 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 18153186..18153347 | 177..16 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:41:37 has no hits.
BS13024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:16 Download gff for
BS13024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-PA | 1..582 | 17..598 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:43:34 Download gff for
BS13024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..706 | 16..599 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:17:03 Download gff for
BS13024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..706 | 16..599 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:17:03 Download gff for
BS13024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18149045..18149253 | 391..599 | 100 | -> | Minus |
3L | 18150677..18150890 | 177..390 | 100 | -> | Minus |
3L | 18153187..18153347 | 16..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:43:34 Download gff for
BS13024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18142145..18142353 | 391..599 | 100 | -> | Minus |
arm_3L | 18143777..18143990 | 177..390 | 100 | -> | Minus |
arm_3L | 18146287..18146447 | 16..176 | 100 | | Minus |
BS13024.5prime Sequence
612 bp (612 high quality bases) assembled on 2006-10-13
> BS13024.5prime
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGATGAAA
GCTTTCTAGACC
BS13024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-PA | 582 | CG7330-RA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 1166 | CG7330-RB | 123..706 | 16..599 | 2920 | 100 | Plus |
CG7330-RA | 986 | CG7330-RA | 123..706 | 16..599 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18150677..18150891 | 225..439 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 18149045..18149256 | 16..227 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 18153186..18153347 | 438..599 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:50:58 has no hits.
BS13024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:16 Download gff for
BS13024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-PA | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:22 Download gff for
BS13024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..706 | 16..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:57 Download gff for
BS13024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 123..706 | 16..599 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:57 Download gff for
BS13024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18149045..18149253 | 16..224 | 100 | -> | Plus |
3L | 18150677..18150890 | 225..438 | 100 | -> | Plus |
3L | 18153187..18153347 | 439..599 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:22 Download gff for
BS13024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18142145..18142353 | 16..224 | 100 | -> | Plus |
arm_3L | 18143777..18143990 | 225..438 | 100 | -> | Plus |
arm_3L | 18146287..18146447 | 439..599 | 100 | | Plus |
BS13024.complete Sequence
614 bp assembled on 2006-11-01
GenBank Submission: FJ637356
> BS13024.complete
GAAGTTATCAGTCGACATGAATCTGCGGTATATCTGCACTGTGGCTCTCG
TGCCAACGCTCTGCGTGCTGCTGGTGCTTCTGCTGGAATTCGTGGAGGAG
GGCCTGGCCCAGAATTCCGATCCCCTTTTCGAGCTTCCCGTCCAGCTGGT
CGGCTTCCCCGTAATCGTGCTATCCGTCCGCCTGTCCCAGTTCGCCAAGA
AGTTGGCCTACTCCCTCAGTCCCAGTACATATAGATCTCGCACCAGAAGG
GATACGGCTCATCCTCTGGCTCTTGATGCTGAACTGGCCCAGAAACAGAT
ACTGGGTGAGTTCGGACCCCAAGCCTGCATCCTGGAGGAGCCGTGCCGTG
TCCATGCCTCTAGATACTCAGGCAGTTCTGATGGCCGCTTTCCTGATGGA
AAAGCAAAGCCACATGCTGCCTGGTCGGAAGTGTTGCGGAACTACAAAGT
GCAATCGGGCGTCAGTGGGATGAAGCAATGGTACCTTCTATCCCTGTTCA
TCGGCGATGCTGTGCGGGATGTGCCGCTGTGCAAGCACCTGGCCAAAAGG
ATGCCGTGTCCAGGAGTCGGACCTCTGCCGGCGCCCCAACCACGATGAAA
GCTTTCTAGACCAT
BS13024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 582 | CG7330-PB | 1..582 | 17..598 | 2910 | 100 | Plus |
CG7330-RA | 582 | CG7330-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-RB | 1166 | CG7330-RB | 123..706 | 16..599 | 2920 | 100 | Plus |
CG7330-RA | 986 | CG7330-RA | 123..706 | 16..599 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18150677..18150891 | 225..439 | 1075 | 100 | Plus |
3L | 28110227 | 3L | 18149045..18149256 | 16..227 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 18153186..18153347 | 438..599 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:07:56 has no hits.
BS13024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:49 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 1..582 | 17..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:50 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 121..704 | 16..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:26 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 124..704 | 17..597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:49 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 121..704 | 16..599 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:36 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7330-RA | 124..704 | 17..597 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:36 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18149046..18149253 | 17..224 | 100 | -> | Plus |
3L | 18150677..18150890 | 225..438 | 100 | -> | Plus |
3L | 18153187..18153345 | 439..597 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:26 Download gff for
BS13024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18142146..18142353 | 17..224 | 100 | -> | Plus |
arm_3L | 18143777..18143990 | 225..438 | 100 | -> | Plus |
arm_3L | 18146287..18146445 | 439..597 | 100 | | Plus |
BS13024.pep Sequence
Translation from 16 to 597
> BS13024.pep
MNLRYICTVALVPTLCVLLVLLLEFVEEGLAQNSDPLFELPVQLVGFPVI
VLSVRLSQFAKKLAYSLSPSTYRSRTRRDTAHPLALDAELAQKQILGEFG
PQACILEEPCRVHASRYSGSSDGRFPDGKAKPHAAWSEVLRNYKVQSGVS
GMKQWYLLSLFIGDAVRDVPLCKHLAKRMPCPGVGPLPAPQPR*
BS13024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7330-PB | 193 | CG7330-PB | 1..193 | 1..193 | 1007 | 100 | Plus |
CG7330-PA | 193 | CG7330-PA | 1..193 | 1..193 | 1007 | 100 | Plus |