Clone BS13025 Report

Search the DGRC for BS13025

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)10Bb-RA
Protein status:BS13025.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13025.3prime Sequence

465 bp (465 high quality bases) assembled on 2006-10-13

> BS13025.3prime
ATGGTCTAGAAAGCTTCTAACCGGAGCAGCCGCGACAACCGCAGTGGACA
CACTCAACGATCCGACCCTCTTCCAGTTTGCATTTGGGCACCCGGCATAT
GCAGTTCGTGCCGAAATTGGTGTCCCTCGTTTGAATGCAGCGCAGGCAGC
ATAGGTTCTCGTATCCAGACTTCTTCCACTTGGCAATCAGATTGCCATCG
GCAATCTTCTCCTTCAGACAGTAGTCGTACAATTCCCGGCTGATGGCTTT
CCGGCGATAGAATAGATCGTAGATGTATCGTGTCTTCTGGTGGTGGATCT
TGAAAATGGGCCAAAGGGATTCCGTAATGCGTTTGCCCTCGTGCGGTTCC
GTTTCGGCTTCGCGCATTTTTTGCTCCAGTTCCTCGAGAGTTGGTTCGAT
CAGCTCCCAACCGTCTGGCGGTGGTTTGCGACTGCGGCGAACCTTGGGCA
TGTCGACTGATAACT

BS13025.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1639-PA 435 l(1)10Bb-RA 1..435 451..17 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)10Bb-RA 934 CG1639-RA 124..559 451..16 2180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11324669..11325012 16..359 1720 100 Plus
X 23542271 X 11325092..11325185 358..451 470 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:38:02 has no hits.

BS13025.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:17 Download gff for BS13025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1639-PA 1..435 17..451 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:43:40 Download gff for BS13025.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 116..559 16..459 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:27:56 Download gff for BS13025.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 116..559 16..459 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:27:56 Download gff for BS13025.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11325092..11325193 358..459 96   Plus
X 11324669..11325010 16..357 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:43:40 Download gff for BS13025.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11218702..11219043 16..357 100 <- Plus
arm_X 11219125..11219226 358..459 96   Plus

BS13025.5prime Sequence

465 bp (465 high quality bases) assembled on 2006-10-13

> BS13025.5prime
GAAGTTATCAGTCGACATGCCCAAGGTTCGCCGCAGTCGCAAACCACCGC
CAGACGGTTGGGAGCTGATCGAACCAACTCTCGAGGAACTGGAGCAAAAA
ATGCGCGAAGCCGAAACGGAACCGCACGAGGGCAAACGCATTACGGAATC
CCTTTGGCCCATTTTCAAGATCCACCACCAGAAGACACGATACATCTACG
ATCTATTCTATCGCCGGAAAGCCATCAGCCGGGAATTGTACGACTACTGT
CTGAAGGAGAAGATTGCCGATGGCAATCTGATTGCCAAGTGGAAGAAGTC
TGGATACGAGAACCTATGCTGCCTGCGCTGCATTCAAACGAGGGACACCA
ATTTCGGCACGAACTGCATATGCCGGGTGCCCAAATGCAAACTGGAAGAG
GGTCGGATCGTTGAGTGTGTCCACTGCGGTTGTCGCGGCTGCTCCGGTTA
GAAGCTTTCTAGACC

BS13025.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1639-PA 435 l(1)10Bb-RA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)10Bb-RA 934 CG1639-RA 124..559 17..452 2180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11324669..11325012 452..109 1720 100 Minus
X 23542271 X 11325092..11325185 110..17 470 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:12:19 has no hits.

BS13025.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:17 Download gff for BS13025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1639-PA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:17:11 Download gff for BS13025.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 116..559 9..452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:53:32 Download gff for BS13025.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 116..559 9..452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:53:32 Download gff for BS13025.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11324669..11325010 111..452 100 <- Minus
X 11325092..11325193 9..110 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:17:11 Download gff for BS13025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11218702..11219043 111..452 100 <- Minus
arm_X 11219125..11219226 9..110 96   Minus

BS13025.complete Sequence

467 bp assembled on 2006-11-01

GenBank Submission: FJ637357

> BS13025.complete
GAAGTTATCAGTCGACATGCCCAAGGTTCGCCGCAGTCGCAAACCACCGC
CAGACGGTTGGGAGCTGATCGAACCAACTCTCGAGGAACTGGAGCAAAAA
ATGCGCGAAGCCGAAACGGAACCGCACGAGGGCAAACGCATTACGGAATC
CCTTTGGCCCATTTTCAAGATCCACCACCAGAAGACACGATACATCTACG
ATCTATTCTATCGCCGGAAAGCCATCAGCCGGGAATTGTACGACTACTGT
CTGAAGGAGAAGATTGCCGATGGCAATCTGATTGCCAAGTGGAAGAAGTC
TGGATACGAGAACCTATGCTGCCTGCGCTGCATTCAAACGAGGGACACCA
ATTTCGGCACGAACTGCATATGCCGGGTGCCCAAATGCAAACTGGAAGAG
GGTCGGATCGTTGAGTGTGTCCACTGCGGTTGTCGCGGCTGCTCCGGTTA
GAAGCTTTCTAGACCAT

BS13025.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)10Bb-RA 435 CG1639-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)10Bb-RA 934 CG1639-RA 124..559 17..452 2180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11324669..11325012 452..109 1720 100 Minus
X 23542271 X 11325092..11325185 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:41:57 has no hits.

BS13025.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:03 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:05 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 107..550 9..452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:04 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 124..558 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:03 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 107..550 9..452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:36 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)10Bb-RA 124..558 17..451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:36 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
X 11324670..11325010 111..451 100 <- Minus
X 11325092..11325185 17..110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:04 Download gff for BS13025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11218703..11219043 111..451 100 <- Minus
arm_X 11219125..11219218 17..110 100   Minus

BS13025.pep Sequence

Translation from 16 to 450

> BS13025.pep
MPKVRRSRKPPPDGWELIEPTLEELEQKMREAETEPHEGKRITESLWPIF
KIHHQKTRYIYDLFYRRKAISRELYDYCLKEKIADGNLIAKWKKSGYENL
CCLRCIQTRDTNFGTNCICRVPKCKLEEGRIVECVHCGCRGCSG*

BS13025.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)10Bb-PA 144 CG1639-PA 1..144 1..144 808 100 Plus