Clone Sequence Records
BS13027.3prime Sequence
755 bp (673 high quality bases) assembled on 2006-10-13
> BS13027.3prime
ATGGTCTAGAAAGCTTCTACACGGAACATGCGATGTTGTGGTAGTTGGTC
TGTGTGCATCCCTGGTTGCGCTCGTCGAAGTAGTAGCCCGTTGGGCACTG
GCCCAGGCTGACGGTCACTCCGCCGGAGCAACGTCCATAGCTCTGGCAAT
CGCCGGCGACGTTTACGTAGGTGATGTTGGTGCCCACACACCTGTCCAGC
TGGCAGCGTACGTTAAGTCTGTCGCGGCACGAGAGCTTCTCGAAGTCGAA
GTACTGGCCAAGTGGACAGCTCAGGTGCTTGGGCTCCGTGTCGTGCTTGC
CGGCGACGGGGCTGCCACAGATATAGTAGTGGGAGCAGGACTCGTCGTCG
GCAAAGTAGCCAACGCGAGCGGATCCGGTGGCACTGTCCAGGCAGAAGGT
GTTTTCCGGTTCCGGCAGGGCGGCACTCTCGTAGCAGGACACCTCAGCCA
CATCCACGCAGTAGCCGAGATTAGCATCGTAGGCACTGGCCACTGGACAG
GCTCGGCTGTGCAAGACCTCGCTGACGCACTCGTAGTACTGGTCACAGTG
GACGGGATCGGCCAGACGGGTGTTGTTCGGCAGGGATCGGCAGGCGGGAC
TGGTCTTCTTCGTCTGGCTGATGGGGCAACGGTACTGCTTTTCGTACACG
CAAGACCTCGATACGGGATGGAAGATCAGCTCGTTGGGACAGTTGGCCTT
GATCTGCTTGTGCGACTTGCACAAAAGTAGCCGCGACAATCGCTGCTGCT
GGGAT
BS13027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-PA | 1080 | CG7017-RA | 373..1080 | 724..17 | 3540 | 100 | Minus |
CG7017-PA | 1080 | CG7017-RA | 341..369 | 755..727 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-RB | 1560 | CG7017-RB | 430..1169 | 755..17 | 3660 | 99.7 | Minus |
CG7017-RA | 1414 | CG7017-RA | 430..1169 | 755..17 | 3660 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20210683..20211422 | 17..755 | 3635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:22:22 has no hits.
BS13027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:19 Download gff for
BS13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-PA | 341..1080 | 17..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:10 Download gff for
BS13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 470..1220 | 5..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:40 Download gff for
BS13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 430..1180 | 5..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:40 Download gff for
BS13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20210672..20211422 | 5..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:10 Download gff for
BS13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20203772..20204522 | 5..755 | 99 | | Plus |
BS13027.5prime Sequence
747 bp (680 high quality bases) assembled on 2006-10-13
> BS13027.5prime
GAAGTTATCAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGT
TTGTGGCCAGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCG
GTGGCCGAGATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACC
GAATACCTGCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGG
AGCAGGGCGGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGC
TGCATCCTGGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCAT
TGCGGACAAGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCA
TCGTGGATCCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCG
CACAAGCAGATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGT
ATCGAGGTCTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGA
CGAAGAAGACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTG
GCCGATCCCGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTT
GCACAGCCGAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCT
ACTGCGTGGATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCG
GAACCGGAAAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCG
BS13027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-PA | 1080 | CG7017-RA | 1..731 | 17..747 | 3655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-RB | 1560 | CG7017-RB | 88..820 | 15..747 | 3665 | 100 | Plus |
CG7017-RA | 1414 | CG7017-RA | 88..820 | 15..747 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20211032..20211754 | 747..25 | 3615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:25:04 has no hits.
BS13027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:20 Download gff for
BS13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-PA | 1..731 | 17..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:39 Download gff for
BS13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 128..860 | 15..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:28 Download gff for
BS13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 88..820 | 15..747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:28 Download gff for
BS13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20211032..20211754 | 25..747 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:39 Download gff for
BS13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20204132..20204854 | 25..747 | 100 | | Minus |
BS13027.complete Sequence
1112 bp assembled on 2006-11-01
GenBank Submission: FJ638851
> BS13027.complete
GAAGTTATCAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGT
TTGTGGCCAGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCG
GTGGCCGAGATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACC
GAATACCTGCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGG
AGCAGGGCGGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGC
TGCATCCTGGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCAT
TGCGGACAAGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCA
TCGTGGATCCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCG
CACAAGCAGATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGT
ATCGAGGTCTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGA
CGAAGAAGACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTG
GCCGATCCCGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTT
GCACAGCCGAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCT
ACTGCGTGGATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCG
GAACCGGAAAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCGCGT
TGGCTACTTTGCCGACGACGAGTCCTGCTCCCACTACTATATCTGTGGCA
GCCCCGTCGCCGGCAAGCACGACACGGAGCCCAAGCACCTGAGCTGTCCA
CTTGGCCAGTACTTCGACTTCGAGAAGCTCTCGTGCCGCGACAGACTTAA
CGTACGCTGCCAGCTGGACAGGTGTGTGGGCACCAACATCACCTACGTAA
ACGTCGCCGGCGATTGCCAGAGCTATGGACGTTGCTCCGGCGGAGTGACC
GTCAGCCTGGGCCAGTGCCCAACGGGCTACTACTTCGACGAGCGCAACCA
GGGATGCACACAGACCAACTACCACAACATCGCATGTTCCGTGTAGAAGC
TTTCTAGACCAT
BS13027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-RB | 1080 | CG7017-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG7017-RA | 1080 | CG7017-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-RB | 1560 | CG7017-RB | 88..1169 | 15..1096 | 5410 | 100 | Plus |
CG7017-RA | 1414 | CG7017-RA | 88..1169 | 15..1096 | 5410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20210683..20211754 | 1096..25 | 5360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:58:41 has no hits.
BS13027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:50 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 1..1080 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:52 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 84..1176 | 15..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:07 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 130..1209 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:50 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 84..1176 | 15..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:40 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7017-RA | 90..1169 | 17..1096 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:40 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20210683..20211754 | 25..1096 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:07 Download gff for
BS13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20203783..20204854 | 25..1096 | 100 | | Minus |
BS13027.pep Sequence
Translation from 16 to 1095
> BS13027.pep
MNRASGVLSLLFVASALGGVIEDFEYLSVAEMCDLLPQETSFLRPNTCDN
WVRCASNYSVLEQGGCAAGLNYNKELGRCILASSSAAVCPYADSIADKAT
NLCANETEGAFIVDPSSSDCRGYILCKSHKQIKANCPNELIFHPVSRSCV
YEKQYRCPISQTKKTSPACRSLPNNTRLADPVHCDQYYECVSEVLHSRAC
PVASAYDANLGYCVDVAEVSCYESAALPEPENTFCLDSATGSARVGYFAD
DESCSHYYICGSPVAGKHDTEPKHLSCPLGQYFDFEKLSCRDRLNVRCQL
DRCVGTNITYVNVAGDCQSYGRCSGGVTVSLGQCPTGYYFDERNQGCTQT
NYHNIACSV*
BS13027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7017-PB | 359 | CG7017-PB | 1..359 | 1..359 | 1963 | 100 | Plus |
CG7017-PA | 359 | CG7017-PA | 1..359 | 1..359 | 1963 | 100 | Plus |
CG6996-PC | 364 | CG6996-PC | 28..333 | 32..359 | 323 | 27.2 | Plus |
CG6996-PB | 364 | CG6996-PB | 28..333 | 32..359 | 323 | 27.2 | Plus |
CG7290-PB | 419 | CG7290-PB | 26..330 | 27..347 | 315 | 26.1 | Plus |