Clone BS13027 Report

Search the DGRC for BS13027

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG7017-RA
Protein status:BS13027.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13027.3prime Sequence

755 bp (673 high quality bases) assembled on 2006-10-13

> BS13027.3prime
ATGGTCTAGAAAGCTTCTACACGGAACATGCGATGTTGTGGTAGTTGGTC
TGTGTGCATCCCTGGTTGCGCTCGTCGAAGTAGTAGCCCGTTGGGCACTG
GCCCAGGCTGACGGTCACTCCGCCGGAGCAACGTCCATAGCTCTGGCAAT
CGCCGGCGACGTTTACGTAGGTGATGTTGGTGCCCACACACCTGTCCAGC
TGGCAGCGTACGTTAAGTCTGTCGCGGCACGAGAGCTTCTCGAAGTCGAA
GTACTGGCCAAGTGGACAGCTCAGGTGCTTGGGCTCCGTGTCGTGCTTGC
CGGCGACGGGGCTGCCACAGATATAGTAGTGGGAGCAGGACTCGTCGTCG
GCAAAGTAGCCAACGCGAGCGGATCCGGTGGCACTGTCCAGGCAGAAGGT
GTTTTCCGGTTCCGGCAGGGCGGCACTCTCGTAGCAGGACACCTCAGCCA
CATCCACGCAGTAGCCGAGATTAGCATCGTAGGCACTGGCCACTGGACAG
GCTCGGCTGTGCAAGACCTCGCTGACGCACTCGTAGTACTGGTCACAGTG
GACGGGATCGGCCAGACGGGTGTTGTTCGGCAGGGATCGGCAGGCGGGAC
TGGTCTTCTTCGTCTGGCTGATGGGGCAACGGTACTGCTTTTCGTACACG
CAAGACCTCGATACGGGATGGAAGATCAGCTCGTTGGGACAGTTGGCCTT
GATCTGCTTGTGCGACTTGCACAAAAGTAGCCGCGACAATCGCTGCTGCT
GGGAT

BS13027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-PA 1080 CG7017-RA 373..1080 724..17 3540 100 Minus
CG7017-PA 1080 CG7017-RA 341..369 755..727 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-RB 1560 CG7017-RB 430..1169 755..17 3660 99.7 Minus
CG7017-RA 1414 CG7017-RA 430..1169 755..17 3660 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20210683..20211422 17..755 3635 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 11:22:22 has no hits.

BS13027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:19 Download gff for BS13027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7017-PA 341..1080 17..755 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:10 Download gff for BS13027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 470..1220 5..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:40 Download gff for BS13027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 430..1180 5..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:40 Download gff for BS13027.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20210672..20211422 5..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:10 Download gff for BS13027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20203772..20204522 5..755 99   Plus

BS13027.5prime Sequence

747 bp (680 high quality bases) assembled on 2006-10-13

> BS13027.5prime
GAAGTTATCAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGT
TTGTGGCCAGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCG
GTGGCCGAGATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACC
GAATACCTGCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGG
AGCAGGGCGGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGC
TGCATCCTGGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCAT
TGCGGACAAGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCA
TCGTGGATCCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCG
CACAAGCAGATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGT
ATCGAGGTCTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGA
CGAAGAAGACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTG
GCCGATCCCGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTT
GCACAGCCGAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCT
ACTGCGTGGATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCG
GAACCGGAAAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCG

BS13027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-PA 1080 CG7017-RA 1..731 17..747 3655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-RB 1560 CG7017-RB 88..820 15..747 3665 100 Plus
CG7017-RA 1414 CG7017-RA 88..820 15..747 3665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20211032..20211754 747..25 3615 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:25:04 has no hits.

BS13027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:20 Download gff for BS13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7017-PA 1..731 17..747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:39 Download gff for BS13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 128..860 15..747 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:28 Download gff for BS13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 88..820 15..747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:28 Download gff for BS13027.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20211032..20211754 25..747 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:39 Download gff for BS13027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20204132..20204854 25..747 100   Minus

BS13027.complete Sequence

1112 bp assembled on 2006-11-01

GenBank Submission: FJ638851

> BS13027.complete
GAAGTTATCAGTCGACATGAATAGAGCTAGCGGTGTCCTGTCGCTGCTGT
TTGTGGCCAGCGCCCTGGGCGGCGTGATCGAGGACTTTGAATACCTATCG
GTGGCCGAGATGTGCGACCTGCTGCCGCAGGAGACAAGCTTCCTGCGACC
GAATACCTGCGACAACTGGGTGCGGTGCGCCAGCAACTACAGCGTGCTGG
AGCAGGGCGGCTGTGCCGCAGGACTCAACTACAACAAGGAGCTAGGCCGC
TGCATCCTGGCATCCTCCAGCGCCGCGGTGTGTCCCTATGCCGACAGCAT
TGCGGACAAGGCCACGAACCTGTGCGCCAACGAAACGGAAGGCGCCTTCA
TCGTGGATCCCAGCAGCAGCGATTGTCGCGGCTACATCTTGTGCAAGTCG
CACAAGCAGATCAAGGCCAACTGTCCCAACGAGCTGATCTTCCATCCCGT
ATCGAGGTCTTGCGTGTACGAAAAGCAGTACCGTTGCCCCATCAGCCAGA
CGAAGAAGACCAGTCCCGCCTGCCGATCCCTGCCGAACAACACCCGTCTG
GCCGATCCCGTCCACTGTGACCAGTACTACGAGTGCGTCAGCGAGGTCTT
GCACAGCCGAGCCTGTCCAGTGGCCAGTGCCTACGATGCTAATCTCGGCT
ACTGCGTGGATGTGGCTGAGGTGTCCTGCTACGAGAGTGCCGCCCTGCCG
GAACCGGAAAACACCTTCTGCCTGGACAGTGCCACCGGATCCGCTCGCGT
TGGCTACTTTGCCGACGACGAGTCCTGCTCCCACTACTATATCTGTGGCA
GCCCCGTCGCCGGCAAGCACGACACGGAGCCCAAGCACCTGAGCTGTCCA
CTTGGCCAGTACTTCGACTTCGAGAAGCTCTCGTGCCGCGACAGACTTAA
CGTACGCTGCCAGCTGGACAGGTGTGTGGGCACCAACATCACCTACGTAA
ACGTCGCCGGCGATTGCCAGAGCTATGGACGTTGCTCCGGCGGAGTGACC
GTCAGCCTGGGCCAGTGCCCAACGGGCTACTACTTCGACGAGCGCAACCA
GGGATGCACACAGACCAACTACCACAACATCGCATGTTCCGTGTAGAAGC
TTTCTAGACCAT

BS13027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-RB 1080 CG7017-PB 1..1080 17..1096 5400 100 Plus
CG7017-RA 1080 CG7017-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-RB 1560 CG7017-RB 88..1169 15..1096 5410 100 Plus
CG7017-RA 1414 CG7017-RA 88..1169 15..1096 5410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20210683..20211754 1096..25 5360 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:58:41 has no hits.

BS13027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:50 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 1..1080 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:52 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 84..1176 15..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:07 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 130..1209 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:50 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 84..1176 15..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:40 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
CG7017-RA 90..1169 17..1096 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:40 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20210683..20211754 25..1096 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:07 Download gff for BS13027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20203783..20204854 25..1096 100   Minus

BS13027.pep Sequence

Translation from 16 to 1095

> BS13027.pep
MNRASGVLSLLFVASALGGVIEDFEYLSVAEMCDLLPQETSFLRPNTCDN
WVRCASNYSVLEQGGCAAGLNYNKELGRCILASSSAAVCPYADSIADKAT
NLCANETEGAFIVDPSSSDCRGYILCKSHKQIKANCPNELIFHPVSRSCV
YEKQYRCPISQTKKTSPACRSLPNNTRLADPVHCDQYYECVSEVLHSRAC
PVASAYDANLGYCVDVAEVSCYESAALPEPENTFCLDSATGSARVGYFAD
DESCSHYYICGSPVAGKHDTEPKHLSCPLGQYFDFEKLSCRDRLNVRCQL
DRCVGTNITYVNVAGDCQSYGRCSGGVTVSLGQCPTGYYFDERNQGCTQT
NYHNIACSV*

BS13027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7017-PB 359 CG7017-PB 1..359 1..359 1963 100 Plus
CG7017-PA 359 CG7017-PA 1..359 1..359 1963 100 Plus
CG6996-PC 364 CG6996-PC 28..333 32..359 323 27.2 Plus
CG6996-PB 364 CG6996-PB 28..333 32..359 323 27.2 Plus
CG7290-PB 419 CG7290-PB 26..330 27..347 315 26.1 Plus