Clone BS13028 Report

Search the DGRC for BS13028

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCpr65Eb-RA
Protein status:BS13028.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13028.3prime Sequence

570 bp (570 high quality bases) assembled on 2006-10-13

> BS13028.3prime
ATGGTCTAGAAAGCTTTTATAGCTTCCTGTCGTAGGGCAGGACCTGACCC
ACAGACAACACTGGCGATGACGCAGGTGCGAGCAGAGCACCGGCTGGCTG
CAGATACTGCTTGCCCTGCTCCTGACCATGGCTCTGGTGATGCTCATGGT
GGTCATGGTGATGGTCGTGGTGCTCGTACTCCCCATCCTCCTCCGGGTGG
TTGCGATTGTACTCCAGCGACTTCAGGATTGCCTCGGGAATGGGATGGGG
CGTGGGCAGGTGCTCGCCCTGCGGCTGGAATCCGTTCTCATCTGCCGTGT
AGGTCAACTGGATGAGCTGGCCCTCGGGTGTGTAGTACTGTGATGAGCCG
CTAGCGTAGTAACCACCCACTCCCTGCTCCTGCTGCGCAATCCCGTTGGA
CGTCTCGAACTGGTAATTGTAGATGCCATCCTCCTGCTTCAGTTCGTTGA
CAAAGCTCCGGATCTCGGCATGGGCATCCGGGGAATCGGAAGGCCGAGCC
TGGACACCGAGCAGCACGGACATGGCCACAAGTACAACGACGTTGATCTT
CGACATGTCGACTGATAACT

BS13028.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8638-PA 540 CG8638-RA 1..540 556..17 2700 100 Minus
CG12330-PA 720 CG12330-RA 547..581 286..252 150 97.1 Minus
CG8634-PA 384 CG8634-RA 214..245 328..297 135 96.8 Minus
CG30045-PA 993 CG30045-RA 751..782 280..249 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1004 CG8638-RA 79..618 556..17 2700 100 Minus
Cpr65Ec-RA 566 CG8634-RA 187..424 435..198 290 75.8 Minus
Cpr65Az-RA 720 CG12330-RA 527..597 306..236 205 87.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7088099..7088626 17..544 2640 100 Plus
3L 28110227 3L 7093462..7093699 435..198 275 74.4 Minus
3L 28110227 3L 6161396..6161466 306..236 205 85.9 Minus
Blast to na_te.dros performed on 2015-02-10 21:51:07 has no hits.

BS13028.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:21 Download gff for BS13028.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8638-PA 1..540 17..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:24 Download gff for BS13028.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 12..564 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:58 Download gff for BS13028.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 12..564 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:58 Download gff for BS13028.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7088095..7088626 12..544 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:24 Download gff for BS13028.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7081195..7081726 12..544 99 <- Plus

BS13028.5prime Sequence

570 bp (570 high quality bases) assembled on 2006-10-13

> BS13028.5prime
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTATAAAAGCTTTCTAGACC

BS13028.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8638-PA 540 CG8638-RA 1..540 17..556 2700 100 Plus
CG12330-PA 720 CG12330-RA 547..581 287..321 150 97.1 Plus
CG8634-PA 384 CG8634-RA 214..245 245..276 135 96.8 Plus
CG30045-PA 993 CG30045-RA 751..782 293..324 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1004 CG8638-RA 79..618 17..556 2700 100 Plus
Cpr65Ec-RA 566 CG8634-RA 187..424 138..375 290 75.8 Plus
Cpr65Az-RA 720 CG12330-RA 527..597 267..337 205 87.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7088099..7088626 556..29 2640 100 Minus
3L 28110227 3L 7093462..7093699 138..375 275 74.4 Plus
3L 28110227 3L 6161396..6161466 267..337 205 85.9 Plus
Blast to na_te.dros performed on 2015-02-03 06:52:03 has no hits.

BS13028.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:21 Download gff for BS13028.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8638-PA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:38 Download gff for BS13028.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 9..561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:10 Download gff for BS13028.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 70..622 9..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:10 Download gff for BS13028.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7088095..7088626 29..561 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:38 Download gff for BS13028.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7081195..7081726 29..561 99 <- Minus

BS13028.complete Sequence

572 bp assembled on 2006-11-01

GenBank Submission: FJ637358

> BS13028.complete
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTATAAAAGCTTTCTAGACCAT

BS13028.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 540 CG8638-PA 1..540 17..556 2700 100 Plus
Cpr65Ec-RA 384 CG8634-PA 107..344 138..375 275 74.4 Plus
Cpr65Az-RA 720 CG12330-PA 527..597 267..337 205 85.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-RA 1004 CG8638-RA 79..618 17..556 2700 100 Plus
Cpr65Ec-RA 566 CG8634-RA 187..424 138..375 275 74.4 Plus
Cpr65Az-RA 720 CG12330-RA 527..597 267..337 205 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7088099..7088626 556..29 2640 100 Minus
3L 28110227 3L 7093462..7093699 138..375 275 74.4 Plus
3L 28110227 3L 6161396..6161466 267..337 205 85.9 Plus
Blast to na_te.dros performed on 2014-11-27 20:06:54 has no hits.

BS13028.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:51 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:49 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 68..620 9..561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:20 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 79..616 17..554 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:51 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 68..620 9..561 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:06 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Eb-RA 79..616 17..554 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:06 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7088101..7088626 29..554 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:20 Download gff for BS13028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7081201..7081726 29..554 100 <- Minus

BS13028.pep Sequence

Translation from 16 to 555

> BS13028.pep
MSKINVVVLVAMSVLLGVQARPSDSPDAHAEIRSFVNELKQEDGIYNYQF
ETSNGIAQQEQGVGGYYASGSSQYYTPEGQLIQLTYTADENGFQPQGEHL
PTPHPIPEAILKSLEYNRNHPEEDGEYEHHDHHHDHHEHHQSHGQEQGKQ
YLQPAGALLAPASSPVLSVGQVLPYDRKL*

BS13028.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Eb-PA 179 CG8638-PA 1..179 1..179 959 100 Plus
Cpr65Ec-PA 127 CG8634-PA 1..119 1..124 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 5..118 8..122 313 53 Plus
Cpr67Fa1-PA 134 CG7941-PA 5..118 8..122 312 52.2 Plus
Cpr67Fb-PA 122 CG18348-PA 2..114 4..121 271 45.8 Plus