Clone Sequence Records
BS13028.3prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS13028.3prime
ATGGTCTAGAAAGCTTTTATAGCTTCCTGTCGTAGGGCAGGACCTGACCC
ACAGACAACACTGGCGATGACGCAGGTGCGAGCAGAGCACCGGCTGGCTG
CAGATACTGCTTGCCCTGCTCCTGACCATGGCTCTGGTGATGCTCATGGT
GGTCATGGTGATGGTCGTGGTGCTCGTACTCCCCATCCTCCTCCGGGTGG
TTGCGATTGTACTCCAGCGACTTCAGGATTGCCTCGGGAATGGGATGGGG
CGTGGGCAGGTGCTCGCCCTGCGGCTGGAATCCGTTCTCATCTGCCGTGT
AGGTCAACTGGATGAGCTGGCCCTCGGGTGTGTAGTACTGTGATGAGCCG
CTAGCGTAGTAACCACCCACTCCCTGCTCCTGCTGCGCAATCCCGTTGGA
CGTCTCGAACTGGTAATTGTAGATGCCATCCTCCTGCTTCAGTTCGTTGA
CAAAGCTCCGGATCTCGGCATGGGCATCCGGGGAATCGGAAGGCCGAGCC
TGGACACCGAGCAGCACGGACATGGCCACAAGTACAACGACGTTGATCTT
CGACATGTCGACTGATAACT
BS13028.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8638-PA | 540 | CG8638-RA | 1..540 | 556..17 | 2700 | 100 | Minus |
CG12330-PA | 720 | CG12330-RA | 547..581 | 286..252 | 150 | 97.1 | Minus |
CG8634-PA | 384 | CG8634-RA | 214..245 | 328..297 | 135 | 96.8 | Minus |
CG30045-PA | 993 | CG30045-RA | 751..782 | 280..249 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 1004 | CG8638-RA | 79..618 | 556..17 | 2700 | 100 | Minus |
Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 435..198 | 290 | 75.8 | Minus |
Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 306..236 | 205 | 87.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7088099..7088626 | 17..544 | 2640 | 100 | Plus |
3L | 28110227 | 3L | 7093462..7093699 | 435..198 | 275 | 74.4 | Minus |
3L | 28110227 | 3L | 6161396..6161466 | 306..236 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:07 has no hits.
BS13028.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:21 Download gff for
BS13028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8638-PA | 1..540 | 17..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:24 Download gff for
BS13028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 12..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:58 Download gff for
BS13028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 12..564 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:58 Download gff for
BS13028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7088095..7088626 | 12..544 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:24 Download gff for
BS13028.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7081195..7081726 | 12..544 | 99 | <- | Plus |
BS13028.5prime Sequence
570 bp (570 high quality bases) assembled on 2006-10-13
> BS13028.5prime
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTATAAAAGCTTTCTAGACC
BS13028.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8638-PA | 540 | CG8638-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
CG12330-PA | 720 | CG12330-RA | 547..581 | 287..321 | 150 | 97.1 | Plus |
CG8634-PA | 384 | CG8634-RA | 214..245 | 245..276 | 135 | 96.8 | Plus |
CG30045-PA | 993 | CG30045-RA | 751..782 | 293..324 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 1004 | CG8638-RA | 79..618 | 17..556 | 2700 | 100 | Plus |
Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 138..375 | 290 | 75.8 | Plus |
Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 267..337 | 205 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7088099..7088626 | 556..29 | 2640 | 100 | Minus |
3L | 28110227 | 3L | 7093462..7093699 | 138..375 | 275 | 74.4 | Plus |
3L | 28110227 | 3L | 6161396..6161466 | 267..337 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:52:03 has no hits.
BS13028.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:21 Download gff for
BS13028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8638-PA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:32:38 Download gff for
BS13028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:40:10 Download gff for
BS13028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 70..622 | 9..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:40:10 Download gff for
BS13028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7088095..7088626 | 29..561 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:32:38 Download gff for
BS13028.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7081195..7081726 | 29..561 | 99 | <- | Minus |
BS13028.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ637358
> BS13028.complete
GAAGTTATCAGTCGACATGTCGAAGATCAACGTCGTTGTACTTGTGGCCA
TGTCCGTGCTGCTCGGTGTCCAGGCTCGGCCTTCCGATTCCCCGGATGCC
CATGCCGAGATCCGGAGCTTTGTCAACGAACTGAAGCAGGAGGATGGCAT
CTACAATTACCAGTTCGAGACGTCCAACGGGATTGCGCAGCAGGAGCAGG
GAGTGGGTGGTTACTACGCTAGCGGCTCATCACAGTACTACACACCCGAG
GGCCAGCTCATCCAGTTGACCTACACGGCAGATGAGAACGGATTCCAGCC
GCAGGGCGAGCACCTGCCCACGCCCCATCCCATTCCCGAGGCAATCCTGA
AGTCGCTGGAGTACAATCGCAACCACCCGGAGGAGGATGGGGAGTACGAG
CACCACGACCATCACCATGACCACCATGAGCATCACCAGAGCCATGGTCA
GGAGCAGGGCAAGCAGTATCTGCAGCCAGCCGGTGCTCTGCTCGCACCTG
CGTCATCGCCAGTGTTGTCTGTGGGTCAGGTCCTGCCCTACGACAGGAAG
CTATAAAAGCTTTCTAGACCAT
BS13028.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 540 | CG8638-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Cpr65Ec-RA | 384 | CG8634-PA | 107..344 | 138..375 | 275 | 74.4 | Plus |
Cpr65Az-RA | 720 | CG12330-PA | 527..597 | 267..337 | 205 | 85.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-RA | 1004 | CG8638-RA | 79..618 | 17..556 | 2700 | 100 | Plus |
Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 138..375 | 275 | 74.4 | Plus |
Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 267..337 | 205 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7088099..7088626 | 556..29 | 2640 | 100 | Minus |
3L | 28110227 | 3L | 7093462..7093699 | 138..375 | 275 | 74.4 | Plus |
3L | 28110227 | 3L | 6161396..6161466 | 267..337 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:06:54 has no hits.
BS13028.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:51 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:49 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 68..620 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:20 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 79..616 | 17..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:51 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 68..620 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:06 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr65Eb-RA | 79..616 | 17..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:06 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7088101..7088626 | 29..554 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:20 Download gff for
BS13028.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7081201..7081726 | 29..554 | 100 | <- | Minus |
BS13028.pep Sequence
Translation from 16 to 555
> BS13028.pep
MSKINVVVLVAMSVLLGVQARPSDSPDAHAEIRSFVNELKQEDGIYNYQF
ETSNGIAQQEQGVGGYYASGSSQYYTPEGQLIQLTYTADENGFQPQGEHL
PTPHPIPEAILKSLEYNRNHPEEDGEYEHHDHHHDHHEHHQSHGQEQGKQ
YLQPAGALLAPASSPVLSVGQVLPYDRKL*
BS13028.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr65Eb-PA | 179 | CG8638-PA | 1..179 | 1..179 | 959 | 100 | Plus |
Cpr65Ec-PA | 127 | CG8634-PA | 1..119 | 1..124 | 374 | 62.1 | Plus |
Cpr67Fa2-PA | 134 | CG18349-PA | 5..118 | 8..122 | 313 | 53 | Plus |
Cpr67Fa1-PA | 134 | CG7941-PA | 5..118 | 8..122 | 312 | 52.2 | Plus |
Cpr67Fb-PA | 122 | CG18348-PA | 2..114 | 4..121 | 271 | 45.8 | Plus |