Clone BS13029 Report

Search the DGRC for BS13029

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG5382-RB
Protein status:BS13029.pep: full length peptide match
Sequenced Size:932

Clone Sequence Records

BS13029.complete Sequence

932 bp assembled on 2010-02-09

GenBank Submission: KX804711

> BS13029.complete
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAG
CGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGC
GCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCG
GCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGCTGGGTCGC
GGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAATCCACAGCC
GAACCACTACGAATAGAAGCTTTCTAGACCAT

BS13029.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 900 CG5382-PB 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1165 CG5382-RB 171..1070 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22364668..22364958 916..626 1455 100 Minus
3R 32079331 3R 22365019..22365225 626..420 1020 99.5 Minus
3R 32079331 3R 22365276..22365469 424..231 970 100 Minus
3R 32079331 3R 22365537..22365650 230..117 570 100 Minus
3R 32079331 3R 22365712..22365813 118..17 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:25:49 has no hits.

BS13029.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:11 Download gff for BS13029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 169..1068 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:11 Download gff for BS13029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 171..1070 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:50 Download gff for BS13029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 169..1068 17..916 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:35 Download gff for BS13029.complete
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 171..1070 17..916 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:35 Download gff for BS13029.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22364668..22364957 627..916 100 <- Minus
3R 22365019..22365220 425..626 100 <- Minus
3R 22365276..22365469 231..424 100 <- Minus
3R 22365537..22365648 119..230 100 <- Minus
3R 22365712..22365813 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:11 Download gff for BS13029.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18190390..18190679 627..916 100 <- Minus
arm_3R 18190741..18190942 425..626 100 <- Minus
arm_3R 18190998..18191191 231..424 100 <- Minus
arm_3R 18191259..18191370 119..230 100 <- Minus
arm_3R 18191434..18191535 17..118 100   Minus

BS13029.5prime Sequence

677 bp (628 high quality bases) assembled on 2006-10-13

> BS13029.5prime
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAG

BS13029.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 900 CG5382-RB 1..661 17..677 3305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-RB 1165 CG5382-RB 171..831 17..677 3305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22365019..22365225 626..420 1020 99.5 Minus
3R 32079331 3R 22365276..22365469 424..231 970 100 Minus
3R 32079331 3R 22365537..22365650 230..117 570 100 Minus
3R 32079331 3R 22365712..22365813 118..17 510 100 Minus
3R 32079331 3R 22364907..22364958 677..626 260 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:47:53 has no hits.

BS13029.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:22 Download gff for BS13029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-PB 1..661 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:58 Download gff for BS13029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 162..831 5..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:38 Download gff for BS13029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5382-RB 162..831 5..677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:38 Download gff for BS13029.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22364907..22364957 627..677 100 <- Minus
3R 22365019..22365220 425..626 100 <- Minus
3R 22365276..22365469 231..424 100 <- Minus
3R 22365537..22365648 119..230 100 <- Minus
3R 22365712..22365821 5..118 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:58 Download gff for BS13029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18190629..18190679 627..677 100 <- Minus
arm_3R 18190741..18190942 425..626 100 <- Minus
arm_3R 18190998..18191191 231..424 100 <- Minus
arm_3R 18191259..18191370 119..230 100 <- Minus
arm_3R 18191434..18191543 5..118 95   Minus

BS13029.pep Sequence

Translation from 16 to 915

> BS13029.pep
MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI
SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC
SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP
KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA
GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP
PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYE*

BS13029.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5382-PB 299 CG5382-PB 1..299 1..299 1646 100 Plus