Clone Sequence Records
BS13029.complete Sequence
932 bp assembled on 2010-02-09
GenBank Submission: KX804711
> BS13029.complete
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAGATCGAGACGATAATAAGTACCAG
CGCCGCACTCCTGCGGAATTGTTCTCGCGATGGACACGCCGCTTCTATGC
GCCCTCCTCGCGGCCGCCGTGGCGTCGCACTTGGTTCCTGGTGACCGCCG
GCATTTTGGCCTTTGTCTTGTTCGTCTATCTTATGGCCTGGCTGGGTCGC
GGAGGATCTGATGCCGTGGACGAGGGCTGGAATAACCCCAATCCACAGCC
GAACCACTACGAATAGAAGCTTTCTAGACCAT
BS13029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 900 | CG5382-PB | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 1165 | CG5382-RB | 171..1070 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22364668..22364958 | 916..626 | 1455 | 100 | Minus |
3R | 32079331 | 3R | 22365019..22365225 | 626..420 | 1020 | 99.5 | Minus |
3R | 32079331 | 3R | 22365276..22365469 | 424..231 | 970 | 100 | Minus |
3R | 32079331 | 3R | 22365537..22365650 | 230..117 | 570 | 100 | Minus |
3R | 32079331 | 3R | 22365712..22365813 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:25:49 has no hits.
BS13029.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:11 Download gff for
BS13029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 169..1068 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:11 Download gff for
BS13029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 171..1070 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:50 Download gff for
BS13029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 169..1068 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:35 Download gff for
BS13029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 171..1070 | 17..916 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:35 Download gff for
BS13029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22364668..22364957 | 627..916 | 100 | <- | Minus |
3R | 22365019..22365220 | 425..626 | 100 | <- | Minus |
3R | 22365276..22365469 | 231..424 | 100 | <- | Minus |
3R | 22365537..22365648 | 119..230 | 100 | <- | Minus |
3R | 22365712..22365813 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:11 Download gff for
BS13029.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18190390..18190679 | 627..916 | 100 | <- | Minus |
arm_3R | 18190741..18190942 | 425..626 | 100 | <- | Minus |
arm_3R | 18190998..18191191 | 231..424 | 100 | <- | Minus |
arm_3R | 18191259..18191370 | 119..230 | 100 | <- | Minus |
arm_3R | 18191434..18191535 | 17..118 | 100 | | Minus |
BS13029.5prime Sequence
677 bp (628 high quality bases) assembled on 2006-10-13
> BS13029.5prime
GAAGTTATCAGTCGACATGGGTTTGTGCAAGTGCCCCAAGCGCCTGGTGA
CCAACCAGTTTTGCTTTGAGCATCGAGTCAATGTTTGCGAACACTGTATG
GTTCAGTCTCATCCAAAGTGCATTGTGCAGTCGTATCTGCAGTGGCTGCG
GGACAGCGACTACATCTCCAACTGCACTCTGTGCGGCACCACATTGGAGC
AGGGCGATTGCGTGCGCCTCGTCTGCTACCATGTTTTCCACTGGGACTGC
CTGAACGCCCGCCAAGCCGCACTGCCTGCCAACACAGCCCCTCGGGGTCA
CCAGTGCCCCGCCTGCAGTGTGGAGATCTTTCCCAACGCCAACCTGGTCT
CCCCGGTGGCCGATGCTCTGAAGAGTTTCCTGTCGCAGGTTAACTGGGGC
AGAAATGGCCTGGGACTCGCCCTGCTCTCTGAGGAGCAGAGCAGCAGTCT
GAAGGCCATTAAGCCCAAGGTGGCAAGCCAGGCGGCTGTCAGCAACATGA
CCAAAGTGCACCACATCCATTCCGGTGGCGAGCGAGAGCGCACGAAGCCC
AATGGCCATGACGCCGTGAGCCCACATTCCGTGCTCCTAATGGATGCATT
TAATCCCCCAAGTGCGGGCGACTACGCCAGCAGCAGAAGACCGCTGCTGC
CCCGTCAGTCGCCAATTGGTGGGACAG
BS13029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-PB | 900 | CG5382-RB | 1..661 | 17..677 | 3305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-RB | 1165 | CG5382-RB | 171..831 | 17..677 | 3305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22365019..22365225 | 626..420 | 1020 | 99.5 | Minus |
3R | 32079331 | 3R | 22365276..22365469 | 424..231 | 970 | 100 | Minus |
3R | 32079331 | 3R | 22365537..22365650 | 230..117 | 570 | 100 | Minus |
3R | 32079331 | 3R | 22365712..22365813 | 118..17 | 510 | 100 | Minus |
3R | 32079331 | 3R | 22364907..22364958 | 677..626 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:47:53 has no hits.
BS13029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:22 Download gff for
BS13029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-PB | 1..661 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:48:58 Download gff for
BS13029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 162..831 | 5..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:28:38 Download gff for
BS13029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5382-RB | 162..831 | 5..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:28:38 Download gff for
BS13029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22364907..22364957 | 627..677 | 100 | <- | Minus |
3R | 22365019..22365220 | 425..626 | 100 | <- | Minus |
3R | 22365276..22365469 | 231..424 | 100 | <- | Minus |
3R | 22365537..22365648 | 119..230 | 100 | <- | Minus |
3R | 22365712..22365821 | 5..118 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:48:58 Download gff for
BS13029.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18190629..18190679 | 627..677 | 100 | <- | Minus |
arm_3R | 18190741..18190942 | 425..626 | 100 | <- | Minus |
arm_3R | 18190998..18191191 | 231..424 | 100 | <- | Minus |
arm_3R | 18191259..18191370 | 119..230 | 100 | <- | Minus |
arm_3R | 18191434..18191543 | 5..118 | 95 | | Minus |
BS13029.pep Sequence
Translation from 16 to 915
> BS13029.pep
MGLCKCPKRLVTNQFCFEHRVNVCEHCMVQSHPKCIVQSYLQWLRDSDYI
SNCTLCGTTLEQGDCVRLVCYHVFHWDCLNARQAALPANTAPRGHQCPAC
SVEIFPNANLVSPVADALKSFLSQVNWGRNGLGLALLSEEQSSSLKAIKP
KVASQAAVSNMTKVHHIHSGGERERTKPNGHDAVSPHSVLLMDAFNPPSA
GDYASSRRPLLPRQSPIGGTDRDDNKYQRRTPAELFSRWTRRFYAPSSRP
PWRRTWFLVTAGILAFVLFVYLMAWLGRGGSDAVDEGWNNPNPQPNHYE*
BS13029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5382-PB | 299 | CG5382-PB | 1..299 | 1..299 | 1646 | 100 | Plus |