Clone BS13032 Report

Search the DGRC for BS13032

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG4306-RA
Protein status:BS13032.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13032.5prime Sequence

693 bp (660 high quality bases) assembled on 2006-10-13

> BS13032.5prime
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAAGGGGTACCCTTTAAAAGCTTTCTAAACC

BS13032.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-PA 663 CG4306-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 1029 CG4306-RA 96..758 17..679 3270 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18462719..18463068 366..17 1750 100 Minus
3L 28110227 3L 18462228..18462543 679..364 1535 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:25:38 has no hits.

BS13032.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:23 Download gff for BS13032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-PA 1..663 17..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:18 Download gff for BS13032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 88..758 5..679 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:07 Download gff for BS13032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 88..758 5..679 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:07 Download gff for BS13032.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18462234..18462540 367..672 99 <- Minus
3L 18462719..18463075 5..366 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:18 Download gff for BS13032.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18455334..18455640 367..672 99 <- Minus
arm_3L 18455819..18456175 5..366 98   Minus

BS13032.complete Sequence

695 bp assembled on 2006-11-01

GenBank Submission: FJ637359

> BS13032.complete
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAGGGGTAACCCTTTAAAAGCTTTCTAGACCAT

BS13032.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 663 CG4306-PA 1..663 17..679 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-RA 1029 CG4306-RA 96..758 17..679 3315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18462719..18463068 366..17 1750 100 Minus
3L 28110227 3L 18462228..18462543 679..364 1580 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:32:23 has no hits.

BS13032.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:52 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 1..663 17..679 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:53 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 82..752 5..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:31 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 96..756 17..677 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:52 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 82..752 5..679 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:22 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
CG4306-RA 96..756 17..677 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:22 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18462719..18463068 17..366 100   Minus
3L 18462230..18462540 367..677 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:31 Download gff for BS13032.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18455330..18455640 367..677 100 <- Minus
arm_3L 18455819..18456168 17..366 100   Minus

BS13032.pep Sequence

Translation from 16 to 678

> BS13032.pep
MNYECLIGVLSCLLVALPKGNCHSISGLNSTLNLPEIRGDQFLYFGFGSN
MLIKRIHIQNPSAVRIGPALLPDYRLDFALESAGWSGSVATIVPTQGDHV
WGTLWKIDLSNLPDIDSQEGVSQGIYEPRTVYVKLHGESESTPARAYLLT
KQPESNLYELPKDSIPLSRQPSKTYLQCLVKGAIESSVPEDYVQRLRSIK
HNGQVNSYLERKLELGGVTL*

BS13032.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4306-PA 220 CG4306-PA 1..220 1..220 1149 100 Plus
CG32196-PB 195 CG32196-PB 15..194 42..220 479 54.4 Plus
CG32196-PC 154 CG32196-PC 3..153 71..220 371 51 Plus