Clone Sequence Records
BS13032.5prime Sequence
693 bp (660 high quality bases) assembled on 2006-10-13
> BS13032.5prime
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAAGGGGTACCCTTTAAAAGCTTTCTAAACC
BS13032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-PA | 663 | CG4306-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 1029 | CG4306-RA | 96..758 | 17..679 | 3270 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18462719..18463068 | 366..17 | 1750 | 100 | Minus |
3L | 28110227 | 3L | 18462228..18462543 | 679..364 | 1535 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:25:38 has no hits.
BS13032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:23 Download gff for
BS13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-PA | 1..663 | 17..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:18 Download gff for
BS13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 88..758 | 5..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:07 Download gff for
BS13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 88..758 | 5..679 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:07 Download gff for
BS13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18462234..18462540 | 367..672 | 99 | <- | Minus |
3L | 18462719..18463075 | 5..366 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:18 Download gff for
BS13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18455334..18455640 | 367..672 | 99 | <- | Minus |
arm_3L | 18455819..18456175 | 5..366 | 98 | | Minus |
BS13032.complete Sequence
695 bp assembled on 2006-11-01
GenBank Submission: FJ637359
> BS13032.complete
GAAGTTATCAGTCGACATGAACTACGAGTGTCTTATCGGTGTTCTAAGCT
GCCTATTGGTAGCTCTCCCCAAAGGAAATTGCCACAGCATCAGTGGTTTA
AATTCCACCTTGAATCTACCAGAGATTCGAGGTGACCAGTTCCTGTACTT
TGGATTCGGAAGCAATATGCTGATCAAGAGAATTCACATCCAGAACCCTT
CGGCGGTAAGAATTGGTCCGGCCCTGCTACCCGATTATCGATTGGACTTT
GCCTTGGAATCAGCCGGTTGGAGCGGTTCTGTGGCCACCATCGTTCCCAC
CCAGGGTGATCATGTCTGGGGAACCCTCTGGAAGATCGATCTAAGTAATC
TGCCGGATATAGACAGTCAAGAAGGCGTTAGTCAAGGCATTTATGAGCCT
CGCACCGTTTACGTAAAACTCCATGGGGAATCTGAATCAACTCCTGCCCG
AGCTTATCTACTGACCAAGCAGCCAGAGAGCAATCTGTACGAACTGCCTA
AGGACTCCATTCCCTTATCCAGACAGCCCTCGAAAACATATCTGCAATGT
CTCGTTAAAGGCGCTATTGAGAGCTCCGTTCCGGAGGATTATGTTCAGCG
ATTGAGGAGCATTAAGCATAATGGACAAGTTAACTCCTATCTGGAACGAA
AACTGGAACTGGGAGGGGTAACCCTTTAAAAGCTTTCTAGACCAT
BS13032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 663 | CG4306-PA | 1..663 | 17..679 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-RA | 1029 | CG4306-RA | 96..758 | 17..679 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18462719..18463068 | 366..17 | 1750 | 100 | Minus |
3L | 28110227 | 3L | 18462228..18462543 | 679..364 | 1580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:32:23 has no hits.
BS13032.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:52 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 1..663 | 17..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:53 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 82..752 | 5..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:31 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 96..756 | 17..677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:52 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 82..752 | 5..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:22 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4306-RA | 96..756 | 17..677 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:22 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18462719..18463068 | 17..366 | 100 | | Minus |
3L | 18462230..18462540 | 367..677 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:31 Download gff for
BS13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18455330..18455640 | 367..677 | 100 | <- | Minus |
arm_3L | 18455819..18456168 | 17..366 | 100 | | Minus |
BS13032.pep Sequence
Translation from 16 to 678
> BS13032.pep
MNYECLIGVLSCLLVALPKGNCHSISGLNSTLNLPEIRGDQFLYFGFGSN
MLIKRIHIQNPSAVRIGPALLPDYRLDFALESAGWSGSVATIVPTQGDHV
WGTLWKIDLSNLPDIDSQEGVSQGIYEPRTVYVKLHGESESTPARAYLLT
KQPESNLYELPKDSIPLSRQPSKTYLQCLVKGAIESSVPEDYVQRLRSIK
HNGQVNSYLERKLELGGVTL*
BS13032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4306-PA | 220 | CG4306-PA | 1..220 | 1..220 | 1149 | 100 | Plus |
CG32196-PB | 195 | CG32196-PB | 15..194 | 42..220 | 479 | 54.4 | Plus |
CG32196-PC | 154 | CG32196-PC | 3..153 | 71..220 | 371 | 51 | Plus |