Clone Sequence Records
BS13033.3prime Sequence
601 bp (576 high quality bases) assembled on 2006-10-13
> BS13033.3prime
ATGGTCTAGAAAGCTTTTAATCACTAATCACTACCAGGTCATCCTCCTCC
TCATCTTCTGCGTTATCCTCTTGATCCTGGGGCACCAAGCTGGAGTTCAT
CAACTCTTCAAAGACATCCGCATTATCGGAACTTTGATTGAAGAAGTAAC
TTATGTTATCCAAGGGCTTCACTGGCGTTGGAATCTTTTCGCTGATGCGA
TGCTGCATCTTGAATCGCTCCACTGGCGTCCTGGCCAGCTTCTGCAGATC
TCCCTTGACCAGCAGATCAAAACTGTCCTCCAAGGAGAATCGCTTACTCT
GCGGTAGTTGATCCACTTGAGAGAGATCTCTTTTCGTTTCCACTTTGGGC
GATTCATTCACATTTCCTAGACTCATCTGCGCCAGACGTAAGCTCAAATC
TTCCGCCATGGGTTCGTAATGAAGCTGGTGACCATCGTGGTTGGTCAGTG
CTGGCTTGGCATTCGGATTCGAGATAATGCCTTTAACTATGTCCGACATA
TCGAACTCTTCGGCATCGCAATCGCTTTCCAGATCGGAAGGCAGGAACTT
GGTGATGGGGGTGGAGCATTGCTGACGTTGCGGAGCGGGAGCCTTGACCG
G
BS13033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10670-PA | 2181 | Gen-RA | 1597..2181 | 601..17 | 2900 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 1672..2257 | 601..16 | 2915 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5149865..5150450 | 16..601 | 2915 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:13:36 has no hits.
BS13033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:24 Download gff for
BS13033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10670-PA | 1597..2181 | 17..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:06:52 Download gff for
BS13033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 1672..2265 | 5..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:09:13 Download gff for
BS13033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 1672..2265 | 5..601 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:09:13 Download gff for
BS13033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5149857..5150450 | 5..601 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:06:52 Download gff for
BS13033.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5142957..5143550 | 5..601 | 99 | | Plus |
BS13033.5prime Sequence
647 bp (643 high quality bases) assembled on 2006-10-13
> BS13033.5prime
GAAGTTATCAGTCGACATGGGCGTCAAGGAATTATGGGGTGTTTTAACGC
CCCATTGTGAACGTAAACCCATTAATGAACTGCGGGGAAAGAAAGTGGCC
ATCGACCTGGCCGGCTGGGTGTGCGAATCTCTTAATGTTGTGGACTACTT
TGTGCATCCAAGGCATCATTTAAAGAACCTCTTCTTTCGCACTTGCTACT
TGATTTGGGAGCAAGTTACTCCGGTTTTCGTTTTGGAGGGAGTTGCTCCA
AAACTCAAGAGCCAGGTGATAGCCAAAAGGAATGAGCTCCAGTTTCGGGG
AGTGAAGCCCAAGAATTCGCCTGAGTGCACCCAAAGTCAGCCGTCCAAGG
GCGACAAGGGACGCAGCCGGTTCAACCATGTTCTCAAGCAGTGCGAAACG
CTGCTGCTCTCCATGGGAATCCAGTGCGTCCAAGGTCCCGGCGAGGCGGA
GGCCTACTGTGCCTTTCTCAACAAGCATGGCCTAGTGGACGGCGTCATTA
GCCAGGACTCGGATTGCTTTGCCTATGGAGCCGTTCGTGTCTATCGCAAC
TTCTCCGTTTCCACCCAAGGAGCCCAGGCAGCCGCCGGCGGAGCTGTGGA
CATCTACGACATGCGGGAGATCACATCCCGAATGGACTTTGGCCAAC
BS13033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10670-PA | 2181 | Gen-RA | 1..631 | 17..647 | 3155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 76..706 | 17..647 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:57:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5151770..5152076 | 481..175 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 5151539..5151704 | 647..482 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 5152143..5152301 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:57:07 has no hits.
BS13033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:24 Download gff for
BS13033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10670-PA | 1..631 | 17..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 03:00:26 Download gff for
BS13033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..706 | 17..647 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:38:45 Download gff for
BS13033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..706 | 17..647 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:38:45 Download gff for
BS13033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5151539..5151704 | 482..647 | 100 | <- | Minus |
| 3L | 5151770..5152076 | 175..481 | 100 | <- | Minus |
| 3L | 5152144..5152301 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 03:00:26 Download gff for
BS13033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5144639..5144804 | 482..647 | 100 | <- | Minus |
| arm_3L | 5144870..5145176 | 175..481 | 100 | <- | Minus |
| arm_3L | 5145244..5145401 | 17..174 | 100 | | Minus |
BS13033.complete Sequence
2213 bp assembled on 2009-12-07
GenBank Submission: KX803691
> BS13033.complete
GAAGTTATCAGTCGACATGGGCGTCAAGGAATTATGGGGTGTTTTAACGC
CCCATTGTGAACGTAAACCCATTAATGAACTGCGGGGAAAGAAAGTGGCC
ATCGACCTGGCCGGCTGGGTGTGCGAATCTCTTAATGTTGTGGACTACTT
TGTGCATCCAAGGCATCATTTAAAGAACCTCTTCTTTCGCACTTGCTACT
TGATTTGGGAGCAAGTTACTCCGGTTTTCGTTTTGGAGGGAGTTGCTCCA
AAACTCAAGAGCCAGGTGATAGCCAAAAGGAATGAGCTCCAGTTTCGGGG
AGTGAAGCCCAAGAATTCGCCTGAGTGCACCCAAAGTCAGCCGTCCAAGG
GCGACAAGGGACGCAGCCGGTTCAACCATGTTCTCAAGCAGTGCGAAACG
CTGCTGCTCTCCATGGGAATCCAGTGCGTCCAAGGTCCCGGCGAGGCGGA
GGCCTACTGTGCCTTTCTCAACAAGCATGGCCTAGTGGACGGCGTCATTA
GCCAGGACTCGGATTGCTTTGCCTATGGAGCCGTTCGTGTCTATCGCAAC
TTCTCCGTTTCCACCCAAGGAGCCCAGGCAGCCGCCGGCGGAGCTGTGGA
CATCTACGACATGCGGGAGATCACATCCCGAATGGACTTTGGCCAACAGA
AGATCATTGTGATGGCTTTGCTCTGCGGCTGTGATTATTGTCCTGATGGC
ATAGGTGGCATTGGCAAGGATGGCGTCCTAAAGCTGTTCAACAAGTACAA
GGAGACTGAGATTTTGGATAGAATGAGAAGCTGGCGTGGTGAAACCGATA
AATACAATGCCTTGGAGATCCGAGTGGACGACAAATCCATCTGCAGCAAT
TGTGGCCACATTGGCAAGACCCAGAGCCACACAAAAAGTGGCTGCAGTGT
GTGTCGCACACACAAAGGCTGCGATGAGAGTCTCTGGAAAGAACAACGAC
TATCCATTAAGTCCGAGTTGACTTTGAGGCGGAAAGCCCTATTATCTCCT
GACTTTCCCAACGAAGAGATCATTGCCGAGTTTCTCAGCGAACCCGACAC
CATTCCCAATCTAAATCTCAACTGGCGGCAACCAAATCTTGTCAAATTCA
TCAAACAAATCGGACATCTCTTGCAGTGGCCAGAAATATACTGCTTCCAA
AAGTTCTTTCCCATACTCACACGCTGGCAGGTGCAGCAATCGAAGCAGGA
GAAGATACTTATCCAGCCACACGAGATTATCAAAAAGCGAACTGTGAAGG
GTGTGCCCAGCTTAGAATTGCGCTGGCACGATCCCAGTGGCATCTTCAAG
GGTCTTATTCCGGACAAGCAGATTGCGGAGTACGAAGCGGAGCATCCCAA
GGGAATCGAGGAACTTTACTACACCATTGAGCCATTGGACATGCTGGAGA
CAGCGTATCCCGATTTAGTAGCGGCCTTTTTGAAGTCGAAGGAGAAGCCC
GCCAAGAAAACCACGCGAAAGAAGAAAACCGCATCTGAAGAGGAGAATAA
GGAAAACGAGCCGAATTCGAAACCAAAGCGAGTGGTCAGAAAGATAAAGG
CTCAGCCTGAAGAGAACCAGCCATTACTGCACCAATTCCTAGGGCGCAAG
AAGGAAGGTACTCCGGTCAAGGCTCCCGCTCCGCAACGTCAGCAATGCTC
CACCCCCATCACCAAGTTCCTGCCCTCCGATCTGGAAAGCGATTGCGATG
CCGAAGAGTTCGATATGTCGGACATAGTTAAAGGCATTATCTCGAATCCG
AATGCCAAGCCAGCACTGACCAACCACGATGGTCACCAGCTTCATTACGA
ACCCATGGCGGAAGATTTGAGCTTACGTCTGGCGCAGATGAGTCTAGGAA
ATGTGAATGAATCGCCCAAAGTGGAAACGAAAAGAGATCTCTCTCAAGTG
GATCAACTACCGCAGAGTAAGCGATTCTCCTTGGAGGACAGTTTTGATCT
GCTGGTCAAGGGAGATCTGCAGAAGCTGGCCAGGACGCCAGTGGAGCGAT
TCAAGATGCAGCATCGCATCAGCGAAAAGATTCCAACGCCAGTGAAGCCC
TTGGATAACATAAGTTACTTCTTCAATCAAAGTTCCGATAATGCGGATGT
CTTTGAAGAGTTGATGAACTCCAGCTTGGTGCCCCAGGATCAAGAGGATA
ACGCAGAAGATGAGGAGGAGGATGACCTGGTAGTGATTAGTGATTAAAAG
CTTTCTAGACCAT
BS13033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2181 | CG10670-PA | 1..2181 | 17..2197 | 10905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 76..2257 | 17..2198 | 10910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5149865..5151123 | 2198..940 | 6295 | 100 | Minus |
| 3L | 28110227 | 3L | 5151770..5152076 | 481..175 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 5151415..5151704 | 771..482 | 1450 | 100 | Minus |
| 3L | 28110227 | 3L | 5151179..5151348 | 939..770 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 5152143..5152301 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:02:26 has no hits.
BS13033.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:50 Download gff for
BS13033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 47..2225 | 17..2195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:20 Download gff for
BS13033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..2254 | 17..2195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:32 Download gff for
BS13033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 47..2225 | 17..2195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:34 Download gff for
BS13033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..2254 | 17..2195 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:34 Download gff for
BS13033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5149868..5151123 | 940..2195 | 100 | <- | Minus |
| 3L | 5151179..5151346 | 772..939 | 100 | <- | Minus |
| 3L | 5151415..5151704 | 482..771 | 100 | <- | Minus |
| 3L | 5151770..5152076 | 175..481 | 100 | <- | Minus |
| 3L | 5152144..5152301 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:20 Download gff for
BS13033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5142968..5144223 | 940..2195 | 100 | <- | Minus |
| arm_3L | 5144279..5144446 | 772..939 | 100 | <- | Minus |
| arm_3L | 5144515..5144804 | 482..771 | 100 | <- | Minus |
| arm_3L | 5144870..5145176 | 175..481 | 100 | <- | Minus |
| arm_3L | 5145244..5145401 | 17..174 | 100 | | Minus |
BS13033.pep Sequence
Translation from 16 to 2196
> BS13033.pep
MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYFVHPRH
HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKN
SPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAF
LNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR
EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEIL
DRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHK
GCDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLN
LNWRQPNLVKFIKQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQ
PHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEEL
YYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPN
SKPKRVVRKIKAQPEENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITK
FLPSDLESDCDAEEFDMSDIVKGIISNPNAKPALTNHDGHQLHYEPMAED
LSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLVKGD
LQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELM
NSSLVPQDQEDNAEDEEEDDLVVISD*
BS13033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-PA | 726 | CG10670-PA | 1..726 | 1..726 | 3839 | 100 | Plus |
| Fen1-PA | 385 | CG8648-PA | 4..265 | 1..255 | 250 | 29.7 | Plus |
| mus201-PD | 1236 | CG10890-PD | 805..972 | 67..244 | 165 | 29.6 | Plus |
| mus201-PC | 1236 | CG10890-PC | 805..972 | 67..244 | 165 | 29.6 | Plus |
