Clone BS13034 Report

Search the DGRC for BS13034

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptUbc7-RA
Protein status:BS13034.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13034.5prime Sequence

534 bp (534 high quality bases) assembled on 2006-10-13

> BS13034.5prime
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGTAAAAGCTTTCTAGACC

BS13034.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4443-PA 504 crl-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 1886 CG4443-RB 325..829 17..521 2525 100 Plus
Ubc7-RA 1435 CG4443-RA 325..829 17..521 2525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594271..16594530 142..401 1300 100 Plus
X 23542271 X 16594690..16594810 401..521 605 100 Plus
X 23542271 X 16594106..16594187 60..141 410 100 Plus
X 23542271 X 16594001..16594043 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:25:45 has no hits.

BS13034.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:25 Download gff for BS13034.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4443-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:42 Download gff for BS13034.5prime
Subject Subject Range Query Range Percent Splice Strand
crl-RA 325..829 17..521 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:33 Download gff for BS13034.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 325..829 17..521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:33 Download gff for BS13034.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16594271..16594530 142..401 100 -> Plus
X 16594691..16594810 402..521 100   Plus
X 16594106..16594187 60..141 100 -> Plus
X 16594001..16594043 17..59 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:42 Download gff for BS13034.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16488724..16488843 402..521 100   Plus
arm_X 16488034..16488076 17..59 100 -> Plus
arm_X 16488139..16488220 60..141 100 -> Plus
arm_X 16488304..16488563 142..401 100 -> Plus

BS13034.3prime Sequence

534 bp (534 high quality bases) assembled on 2006-10-13

> BS13034.3prime
ATGGTCTAGAAAGCTTTTACGCCGGTAAACCAAGAGTTTTGCGCACCAGC
CGTCGGGCGATGGCGTTGAACTCATCCCTCTGTTCGCGCCACATAATTGC
TGCATCCACATTAGCGCCGCTCTCATCGTTGGGTTCCGCCAGCATGCTGA
CCACACTAAGCAAAATCTTCTCCACGCTCTGGACAGGACTCCAGCGCTCC
GCGGATAGCTCGTAGCCCATGGGATCGTCGCCGGGTGCGTGTAGTATTGA
TATGCAGACCCGCCCGTCGGCGAATATGTTGGGATGGAACATGTCACAAG
TGAATTTCATTTTAGGCGGACTCAGAGGATAGTCGGTCGGAAAGATGAGC
CGGGCAGGAAACACTCCGCCCTCGAAACAAGTGCCCTCAGGTCCGGCAAT
CAGTGCCTCCCACTCGAAGAAGTTGTCCTCGCTGATGGGGCCGGCCACAA
TGCCCTCGGGCGGGTCAAGTGTTAACTGTTTGTATTCCGCCATCAGGCGG
CGCAGTGCGGACCCAGCCATGTCGACTGATAACT

BS13034.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4443-PA 504 crl-RA 1..504 520..17 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 1886 CG4443-RB 325..829 520..16 2525 100 Minus
Ubc7-RA 1435 CG4443-RA 325..829 520..16 2525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594271..16594530 395..136 1300 100 Minus
X 23542271 X 16594690..16594810 136..16 605 100 Minus
X 23542271 X 16594106..16594187 477..396 410 100 Minus
X 23542271 X 16594001..16594043 520..478 215 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:51:48 has no hits.

BS13034.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:24 Download gff for BS13034.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4443-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:26 Download gff for BS13034.3prime
Subject Subject Range Query Range Percent Splice Strand
crl-RA 325..829 16..520 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:05 Download gff for BS13034.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 325..829 16..520 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:05 Download gff for BS13034.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16594001..16594043 478..520 100 -> Minus
X 16594106..16594187 396..477 100 -> Minus
X 16594271..16594530 136..395 100 -> Minus
X 16594691..16594810 16..135 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:26 Download gff for BS13034.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16488034..16488076 478..520 100 -> Minus
arm_X 16488139..16488220 396..477 100 -> Minus
arm_X 16488304..16488563 136..395 100 -> Minus
arm_X 16488724..16488843 16..135 100   Minus

BS13034.complete Sequence

536 bp assembled on 2006-11-01

GenBank Submission: FJ637360

> BS13034.complete
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGTAAAAGCTTTCTAGACCAT

BS13034.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 504 CG4443-PB 1..504 17..520 2520 100 Plus
Ubc7-RA 504 CG4443-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-RB 1886 CG4443-RB 325..829 17..521 2525 100 Plus
Ubc7-RA 1435 CG4443-RA 325..829 17..521 2525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16594271..16594530 142..401 1300 100 Plus
X 23542271 X 16594690..16594810 401..521 605 100 Plus
X 23542271 X 16594106..16594187 60..141 410 100 Plus
X 23542271 X 16594001..16594043 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:08:06 has no hits.

BS13034.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:53 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:55 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 323..827 17..521 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:41 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 325..826 17..518 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:53 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
crl-RA 323..827 17..521 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:33 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc7-RA 325..826 17..518 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:33 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
X 16594001..16594043 17..59 100 -> Plus
X 16594106..16594187 60..141 100 -> Plus
X 16594271..16594530 142..401 100 -> Plus
X 16594691..16594807 402..518 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:41 Download gff for BS13034.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16488034..16488076 17..59 100 -> Plus
arm_X 16488139..16488220 60..141 100 -> Plus
arm_X 16488304..16488563 142..401 100 -> Plus
arm_X 16488724..16488840 402..518 100   Plus

BS13034.pep Sequence

Translation from 16 to 519

> BS13034.pep
MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAGPEGTCFE
GGVFPARLIFPTDYPLSPPKMKFTCDMFHPNIFADGRVCISILHAPGDDP
MGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAAIMWREQRDE
FNAIARRLVRKTLGLPA*

BS13034.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc7-PB 167 CG4443-PB 1..167 1..167 882 100 Plus
Ubc7-PA 167 CG4443-PA 1..167 1..167 882 100 Plus
CG40045-PA 168 CG40045-PA 10..163 9..162 451 55.8 Plus
CG40045-PD 167 CG40045-PD 10..162 9..162 437 55.8 Plus
Ubc87F-PA 168 CG9602-PA 10..163 9..162 437 55.2 Plus