Clone Sequence Records
BS13034.5prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-13
> BS13034.5prime
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGTAAAAGCTTTCTAGACC
BS13034.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4443-PA | 504 | crl-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 1886 | CG4443-RB | 325..829 | 17..521 | 2525 | 100 | Plus |
Ubc7-RA | 1435 | CG4443-RA | 325..829 | 17..521 | 2525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16594271..16594530 | 142..401 | 1300 | 100 | Plus |
X | 23542271 | X | 16594690..16594810 | 401..521 | 605 | 100 | Plus |
X | 23542271 | X | 16594106..16594187 | 60..141 | 410 | 100 | Plus |
X | 23542271 | X | 16594001..16594043 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:25:45 has no hits.
BS13034.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:25 Download gff for
BS13034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4443-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:25:42 Download gff for
BS13034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 325..829 | 17..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:33 Download gff for
BS13034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc7-RA | 325..829 | 17..521 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:33 Download gff for
BS13034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16594271..16594530 | 142..401 | 100 | -> | Plus |
X | 16594691..16594810 | 402..521 | 100 | | Plus |
X | 16594106..16594187 | 60..141 | 100 | -> | Plus |
X | 16594001..16594043 | 17..59 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:25:42 Download gff for
BS13034.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16488724..16488843 | 402..521 | 100 | | Plus |
arm_X | 16488034..16488076 | 17..59 | 100 | -> | Plus |
arm_X | 16488139..16488220 | 60..141 | 100 | -> | Plus |
arm_X | 16488304..16488563 | 142..401 | 100 | -> | Plus |
BS13034.3prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-13
> BS13034.3prime
ATGGTCTAGAAAGCTTTTACGCCGGTAAACCAAGAGTTTTGCGCACCAGC
CGTCGGGCGATGGCGTTGAACTCATCCCTCTGTTCGCGCCACATAATTGC
TGCATCCACATTAGCGCCGCTCTCATCGTTGGGTTCCGCCAGCATGCTGA
CCACACTAAGCAAAATCTTCTCCACGCTCTGGACAGGACTCCAGCGCTCC
GCGGATAGCTCGTAGCCCATGGGATCGTCGCCGGGTGCGTGTAGTATTGA
TATGCAGACCCGCCCGTCGGCGAATATGTTGGGATGGAACATGTCACAAG
TGAATTTCATTTTAGGCGGACTCAGAGGATAGTCGGTCGGAAAGATGAGC
CGGGCAGGAAACACTCCGCCCTCGAAACAAGTGCCCTCAGGTCCGGCAAT
CAGTGCCTCCCACTCGAAGAAGTTGTCCTCGCTGATGGGGCCGGCCACAA
TGCCCTCGGGCGGGTCAAGTGTTAACTGTTTGTATTCCGCCATCAGGCGG
CGCAGTGCGGACCCAGCCATGTCGACTGATAACT
BS13034.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4443-PA | 504 | crl-RA | 1..504 | 520..17 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 1886 | CG4443-RB | 325..829 | 520..16 | 2525 | 100 | Minus |
Ubc7-RA | 1435 | CG4443-RA | 325..829 | 520..16 | 2525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16594271..16594530 | 395..136 | 1300 | 100 | Minus |
X | 23542271 | X | 16594690..16594810 | 136..16 | 605 | 100 | Minus |
X | 23542271 | X | 16594106..16594187 | 477..396 | 410 | 100 | Minus |
X | 23542271 | X | 16594001..16594043 | 520..478 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:51:48 has no hits.
BS13034.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:24 Download gff for
BS13034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4443-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:08:26 Download gff for
BS13034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 325..829 | 16..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:05 Download gff for
BS13034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc7-RA | 325..829 | 16..520 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:05 Download gff for
BS13034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16594001..16594043 | 478..520 | 100 | -> | Minus |
X | 16594106..16594187 | 396..477 | 100 | -> | Minus |
X | 16594271..16594530 | 136..395 | 100 | -> | Minus |
X | 16594691..16594810 | 16..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:08:26 Download gff for
BS13034.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16488034..16488076 | 478..520 | 100 | -> | Minus |
arm_X | 16488139..16488220 | 396..477 | 100 | -> | Minus |
arm_X | 16488304..16488563 | 136..395 | 100 | -> | Minus |
arm_X | 16488724..16488843 | 16..135 | 100 | | Minus |
BS13034.complete Sequence
536 bp assembled on 2006-11-01
GenBank Submission: FJ637360
> BS13034.complete
GAAGTTATCAGTCGACATGGCTGGGTCCGCACTGCGCCGCCTGATGGCGG
AATACAAACAGTTAACACTTGACCCGCCCGAGGGCATTGTGGCCGGCCCC
ATCAGCGAGGACAACTTCTTCGAGTGGGAGGCACTGATTGCCGGACCTGA
GGGCACTTGTTTCGAGGGCGGAGTGTTTCCTGCCCGGCTCATCTTTCCGA
CCGACTATCCTCTGAGTCCGCCTAAAATGAAATTCACTTGTGACATGTTC
CATCCCAACATATTCGCCGACGGGCGGGTCTGCATATCAATACTACACGC
ACCCGGCGACGATCCCATGGGCTACGAGCTATCCGCGGAGCGCTGGAGTC
CTGTCCAGAGCGTGGAGAAGATTTTGCTTAGTGTGGTCAGCATGCTGGCG
GAACCCAACGATGAGAGCGGCGCTAATGTGGATGCAGCAATTATGTGGCG
CGAACAGAGGGATGAGTTCAACGCCATCGCCCGACGGCTGGTGCGCAAAA
CTCTTGGTTTACCGGCGTAAAAGCTTTCTAGACCAT
BS13034.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 504 | CG4443-PB | 1..504 | 17..520 | 2520 | 100 | Plus |
Ubc7-RA | 504 | CG4443-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-RB | 1886 | CG4443-RB | 325..829 | 17..521 | 2525 | 100 | Plus |
Ubc7-RA | 1435 | CG4443-RA | 325..829 | 17..521 | 2525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16594271..16594530 | 142..401 | 1300 | 100 | Plus |
X | 23542271 | X | 16594690..16594810 | 401..521 | 605 | 100 | Plus |
X | 23542271 | X | 16594106..16594187 | 60..141 | 410 | 100 | Plus |
X | 23542271 | X | 16594001..16594043 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:08:06 has no hits.
BS13034.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:53 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:15:55 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 323..827 | 17..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:41 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 325..826 | 17..518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:53 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
crl-RA | 323..827 | 17..521 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:33 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc7-RA | 325..826 | 17..518 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:33 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16594001..16594043 | 17..59 | 100 | -> | Plus |
X | 16594106..16594187 | 60..141 | 100 | -> | Plus |
X | 16594271..16594530 | 142..401 | 100 | -> | Plus |
X | 16594691..16594807 | 402..518 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:41 Download gff for
BS13034.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16488034..16488076 | 17..59 | 100 | -> | Plus |
arm_X | 16488139..16488220 | 60..141 | 100 | -> | Plus |
arm_X | 16488304..16488563 | 142..401 | 100 | -> | Plus |
arm_X | 16488724..16488840 | 402..518 | 100 | | Plus |
BS13034.pep Sequence
Translation from 16 to 519
> BS13034.pep
MAGSALRRLMAEYKQLTLDPPEGIVAGPISEDNFFEWEALIAGPEGTCFE
GGVFPARLIFPTDYPLSPPKMKFTCDMFHPNIFADGRVCISILHAPGDDP
MGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAAIMWREQRDE
FNAIARRLVRKTLGLPA*
BS13034.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc7-PB | 167 | CG4443-PB | 1..167 | 1..167 | 882 | 100 | Plus |
Ubc7-PA | 167 | CG4443-PA | 1..167 | 1..167 | 882 | 100 | Plus |
CG40045-PA | 168 | CG40045-PA | 10..163 | 9..162 | 451 | 55.8 | Plus |
CG40045-PD | 167 | CG40045-PD | 10..162 | 9..162 | 437 | 55.8 | Plus |
Ubc87F-PA | 168 | CG9602-PA | 10..163 | 9..162 | 437 | 55.2 | Plus |