Clone BS13035 Report

Search the DGRC for BS13035

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptstep-RA
Protein status:BS13035.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS13035.3prime Sequence

785 bp (697 high quality bases) assembled on 2006-10-13

> BS13035.3prime
ATGGTCTAGAAAGCTTTTAACTCTTGCTGAGTGCCTTTTTCTTTCTTTGT
ACCAGGATGTCATAAAACGGATTATGGCTTATGGACTGCGTCAAACGCTT
GATCCACTCCTGCTGATCTTCCTCCGTGGCAGCGGACATGCGGTACACCG
TATGCTTGCCCTCTACCACTTTGCCCTCAGAGTCAGTCTTGCATGCCTTG
ATTATATCAGCACCGCCCGTCGCAAACAACTCAAAGCAATGCGGTTTGCT
GCGATCGTGAATCTCGCGCACCGATATATTCTCCAGCGGTATAATTCCGC
GTGGTTCCTTATCCGTTGTGTATTCAAAATAGTATAAGCAATTATCGTTC
AAAATGAACCAACGTCGTTTCCACGATTTGTATCTGCCGCCTTGCTTCCA
CAGCCAGCCCTCCTTGTCGGGATTGAAGAAGGTGTGCATCAAATCATTTC
CATCATCCTGTGGTATTTTAAATGGCTCTGTTCGAATTGACTCGTAAAGG
GATTCCAGCAGGCCACGGGGCAAATCTCCGCCGTTGTTGATGCCACGATT
CATCGATATGAATTGATCAACGGTGGGTTTGTCTTTAACAGATGGATTGT
GTAGTGAGGTATTTAGCATTATAATTGCGAAGCTGAGCACATAGCATGTG
TCCGTGTTGGTGAATATATCTGGATTTAGTTGACAGTAGCGCTGTGCGAA
GGTCTCCATCATGCGATCGATCTTTTGTGCCTCGCCGGGCAAGCAAAACG
ACCACAGAAATTGTCTGAAGGCTTGTACGAAAATG

BS13035.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11628-PB 1467 Grp1-RB 704..1467 780..17 3745 99.6 Minus
CG11628-PA 1233 Grp1-RA 470..1233 780..17 3745 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
step-RE 4776 CG11628-RE 2466..3234 785..17 3785 99.5 Minus
step-RD 3095 CG11628-RD 1998..2766 785..17 3785 99.5 Minus
step-RC 2834 CG11628-RC 1737..2505 785..17 3785 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21741793..21742010 168..385 1090 100 Plus
2L 23513712 2L 21742075..21742280 384..589 1030 100 Plus
2L 23513712 2L 21742522..21742701 588..767 870 98.9 Plus
2L 23513712 2L 21741583..21741735 17..169 765 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:25:56 has no hits.

BS13035.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:25 Download gff for BS13035.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11628-PA 465..1233 17..785 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:29:23 Download gff for BS13035.3prime
Subject Subject Range Query Range Percent Splice Strand
step-RC 1737..2509 12..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:39 Download gff for BS13035.3prime
Subject Subject Range Query Range Percent Splice Strand
step-RC 1737..2509 12..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:39 Download gff for BS13035.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21741795..21742008 170..383 100 <- Plus
2L 21742075..21742280 384..589 100 <- Plus
2L 21742524..21742704 590..770 98   Plus
2L 21741579..21741735 12..169 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:29:23 Download gff for BS13035.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21741579..21741735 12..169 98 <- Plus
arm_2L 21741795..21742008 170..383 100 <- Plus
arm_2L 21742075..21742280 384..589 100 <- Plus
arm_2L 21742524..21742704 590..770 98   Plus

BS13035.5prime Sequence

760 bp (713 high quality bases) assembled on 2006-10-13

> BS13035.5prime
GAAGTTATCAGTCGACATGATTAGCGCAATGGACAATTTCGACAACAGGT
CGTACGGTGCCATATCAAAGGGGCGCAGTGAATTCTCAATGCCAGAACTT
ACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGCAGGA
ACTTTTACTCGAAATACAGCAAATTAAAGATGAGTTGTGCGAGGTTGTAT
CGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAAA
GATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAAA
AGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGG
ACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCATT
GGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGGC
TTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTCA
GACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGAT
CGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATAT
ATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATGC
TAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGAT
CAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCCG
TGGCCTGCTG

BS13035.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11628-PA 1233 Grp1-RA 1..744 17..760 3695 99.8 Plus
CG11628-PB 1467 Grp1-RB 521..978 303..760 2290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
step-RA 1736 CG11628-RA 225..968 17..760 3705 99.9 Plus
step-RE 4776 CG11628-RE 2153..2745 168..760 2965 100 Plus
step-RD 3095 CG11628-RD 1685..2277 168..760 2965 100 Plus
step-RE 4776 CG11628-RE 225..377 17..169 750 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21742522..21742701 678..499 900 100 Minus
2L 23513712 2L 21743838..21743974 303..167 685 100 Minus
2L 23513712 2L 21742972..21743073 402..301 510 100 Minus
2L 23513712 2L 21742776..21742876 501..401 505 100 Minus
2L 23513712 2L 21742197..21742280 760..677 420 100 Minus
2L 23513712 2L 21756554..21756630 169..93 385 100 Minus
2L 23513712 2L 21757164..21757242 95..17 380 98.7 Minus
Blast to na_te.dros performed 2015-02-12 11:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2877..2957 89..172 124 65.9 Plus

BS13035.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:26 Download gff for BS13035.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11628-PA 1..744 17..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:48:12 Download gff for BS13035.5prime
Subject Subject Range Query Range Percent Splice Strand
step-RA 219..968 8..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:43:56 Download gff for BS13035.5prime
Subject Subject Range Query Range Percent Splice Strand
step-RA 219..968 8..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:43:56 Download gff for BS13035.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21742776..21742875 402..501 100 <- Minus
2L 21742973..21743071 303..401 100 <- Minus
2L 21743839..21743971 170..302 100 <- Minus
2L 21756554..21756627 96..169 100 <- Minus
2L 21757164..21757237 22..95 98 <- Minus
2L 21742197..21742280 677..760 100 <- Minus
2L 21742524..21742698 502..676 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:48:12 Download gff for BS13035.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21742524..21742698 502..676 100 <- Minus
arm_2L 21742776..21742875 402..501 100 <- Minus
arm_2L 21742973..21743071 303..401 100 <- Minus
arm_2L 21742197..21742280 677..760 100 <- Minus
arm_2L 21743839..21743971 170..302 100 <- Minus
arm_2L 21756554..21756627 96..169 100 <- Minus
arm_2L 21757164..21757237 22..95 98 <- Minus

BS13035.complete Sequence

1265 bp assembled on 2006-11-01

GenBank Submission: FJ637361

> BS13035.complete
GAAGTTATCAGTCGACATGATTAGCGCAATGGACAATTTCGACAACAGGT
CGTACGGTGCCATATCAAAGGGGCGCAGTGAATTCTCAATGCCAGAACTT
ACACCGGAGCAGCAAAAACTGCTGATTGAGCTGCGACGCAAGAAGCAGGA
ACTTTTACTCGAAATACAGCAAATTAAAGATGAGTTGTGCGAGGTTGTAT
CGGAAATGGAGGCGCTGGATGTGCCCGAAGACTGCAAGCATTCCAATAAA
GATAAACAGATGTCCATTGGCCGTAAAAAGTTTAACATGGACCCAAAAAA
AGGCATTGAGTATCTCGTTGAAAACAGGCTGCTACGTCATGATCCCCAGG
ACGTTGCCCACTTTCTCTATAAGGGAGAGGGACTAAATAAAACAGCCATT
GGCGATTACCTCGGCGAGAAAAACGATTTTAATGAGGATGTGCTTAAGGC
TTTTGTGGCGCTTCACGATTTCACCAATCTCATTCTCGTACAAGCCCTCA
GACAATTTCTGTGGTCGTTTCGCCTGCCCGGCGAGGCACAAAAGATCGAT
CGCATGATGGAGACCTTCGCACAGCGCTACTGTCAACTAAATCCAGATAT
ATTCACCAACACGGACACATGCTATGTGCTCAGCTTCGCAATTATAATGC
TAAATACCTCACTACACAATCCATCTGTTAAAGACAAACCCACCGTTGAT
CAATTCATATCGATGAATCGTGGCATCAACAACGGCGGAGATTTGCCCCG
TGGCCTGCTGGAATCCCTTTACGAGTCAATTCGAACAGAGCCATTTAAAA
TACCACAGGATGATGGAAATGATTTGATGCACACCTTCTTCAATCCCGAC
AAGGAGGGCTGGCTGTGGAAGCAAGGCGGCAGATACAAATCGTGGAAACG
ACGTTGGTTCATTTTGAACGATAATTGCTTATACTATTTTGAATACACAA
CGGATAAGGAACCACGCGGAATTATACCGCTGGAGAATATATCGGTGCGC
GAGATTCACGATCGCAGCAAACCGCATTGCTTTGAGTTGTTTGCGACGGG
CGGTGCTGATATAATCAAGGCATGCAAGACTGACTCTGAGGGCAAAGTGG
TAGAGGGCAAGCATACGGTGTACCGCATGTCCGCTGCCACGGAGGAAGAT
CAGCAGGAGTGGATCAAGCGTTTGACGCAGTCCATAAGCCATAATCCGTT
TTATGACATCCTGGTACAAAGAAAGAAAAAGGCACTCAGCAAGAGTTAAA
AGCTTTCTAGACCAT

BS13035.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
step-RA 1233 CG11628-PA 1..1233 17..1249 6150 99.9 Plus
step-RE 2184 CG11628-PE 1103..2184 168..1249 5410 100 Plus
step-RD 2184 CG11628-PD 1103..2184 168..1249 5410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
step-RA 1736 CG11628-RA 225..1457 17..1249 6150 99.9 Plus
step-RE 4776 CG11628-RE 2153..3234 168..1249 5410 100 Plus
step-RD 3095 CG11628-RD 1685..2766 168..1249 5410 100 Plus
step-RE 4776 CG11628-RE 225..377 17..169 750 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21741793..21742010 1098..881 1090 100 Minus
2L 23513712 2L 21742075..21742280 882..677 1030 100 Minus
2L 23513712 2L 21742522..21742701 678..499 900 100 Minus
2L 23513712 2L 21741583..21741735 1249..1097 765 100 Minus
2L 23513712 2L 21743838..21743974 303..167 685 100 Minus
2L 23513712 2L 21742972..21743073 402..301 510 100 Minus
2L 23513712 2L 21742776..21742876 501..401 505 100 Minus
2L 23513712 2L 21756554..21756630 169..93 385 100 Minus
2L 23513712 2L 21757164..21757242 95..17 380 98.7 Minus
Blast to na_te.dros performed 2014-11-28 08:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2877..2957 89..172 124 65.9 Plus

BS13035.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:41:34 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 1..1233 17..1249 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:40:06 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 220..1450 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:35 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 225..1455 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:41:35 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 214..1456 8..1254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:23 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
step-RA 225..1455 17..1247 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:23 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21756554..21756627 96..169 100 <- Minus
2L 21757164..21757242 17..95 98   Minus
2L 21742973..21743071 303..401 100 <- Minus
2L 21743839..21743971 170..302 100 <- Minus
2L 21741585..21741735 1097..1247 100 <- Minus
2L 21741795..21742008 883..1096 100 <- Minus
2L 21742075..21742280 677..882 100 <- Minus
2L 21742524..21742698 502..676 100 <- Minus
2L 21742776..21742875 402..501 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:35 Download gff for BS13035.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21741585..21741735 1097..1247 100 <- Minus
arm_2L 21741795..21742008 883..1096 100 <- Minus
arm_2L 21742075..21742280 677..882 100 <- Minus
arm_2L 21742524..21742698 502..676 100 <- Minus
arm_2L 21742776..21742875 402..501 100 <- Minus
arm_2L 21742973..21743071 303..401 100 <- Minus
arm_2L 21743839..21743971 170..302 100 <- Minus
arm_2L 21756554..21756627 96..169 100 <- Minus
arm_2L 21757164..21757242 17..95 98   Minus

BS13035.pep Sequence

Translation from 16 to 1248

> BS13035.pep
MISAMDNFDNRSYGAISKGRSEFSMPELTPEQQKLLIELRRKKQELLLEI
QQIKDELCEVVSEMEALDVPEDCKHSNKDKQMSIGRKKFNMDPKKGIEYL
VENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALH
DFTNLILVQALRQFLWSFRLPGEAQKIDRMMETFAQRYCQLNPDIFTNTD
TCYVLSFAIIMLNTSLHNPSVKDKPTVDQFISMNRGINNGGDLPRGLLES
LYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFIL
NDNCLYYFEYTTDKEPRGIIPLENISVREIHDRSKPHCFELFATGGADII
KACKTDSEGKVVEGKHTVYRMSAATEEDQQEWIKRLTQSISHNPFYDILV
QRKKKALSKS*

BS13035.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
step-PA 410 CG11628-PA 1..410 1..410 2176 100 Plus
step-PE 727 CG11628-PE 352..727 28..410 1932 95.3 Plus
step-PD 727 CG11628-PD 352..727 28..410 1932 95.3 Plus
step-PC 727 CG11628-PC 352..727 28..410 1932 95.3 Plus
Sec71-PA 1653 CG7578-PA 571..774 68..267 448 45.6 Plus