Clone Sequence Records
BS13038.complete Sequence
1841 bp assembled on 2009-12-07
GenBank Submission: KX805261
> BS13038.complete
GAAGTTATCAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCA
AGTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAG
AACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCA
CGCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGC
AGATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAAT
GCCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATT
CTCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCC
ATGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTAT
AAGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTAT
TCGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGC
TTAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCG
GTTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTG
GCTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAAT
CGAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGA
GAGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAAC
CGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTC
CACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCAG
GCATTGAGAAGGGCCAGAAAGACGAAGCAGCAGCCACGTTTGTTCGACGA
CGAGGAGGACCTGGAGATCACCAGTTTGCAGAACGATCGCAACAAGAACA
GAACCAGCGATGGCAAGGGGACACCGCCATCGCTGGAGCCAACGAATGCT
GCCGCCAATCAGGCAGCCAAGAAGACCATCCCACAAATGTCTAGTCAGGG
GATGGCGAAGAATAATACCGCGAAGAGCAAAAACACGTGCAGGAAATCCT
CGCCAACGCCCACATCCAGTGGACAGTCGCAGCCAGCGGTATCGTCATCC
GGCAGCTCCGATGATTCCAGTGCCGAGCTGCAGCAGGAGCAGCAAAGACG
CGTCGCATCCGCCGCCCAGTGGCGCGATGAGCCGCGCGAGAGCCGCACCC
AGCCGGAGGAGTACGGCCAGGAGACGTTCCTCGGCCTCTTTGAGCTCTAC
TCGCCGGAGGTGCTCAAGAAGCTCAGTCAGCGCCACTCGAAGCGCAAGCG
TCGCACCGTTCAGAATGCCAGCGGAGTGGATTTTCACTATGGCCAGCAGT
TGAATGCCGTGGACGCGTTAGTCATGGGCGTTCGTGGTCAGAAGAAGACC
AAGGAGAAGTCCGAATTCCTGCTCTCGCCGACGGAAAAACGTTTGCAGGC
CAACTCGAAGAGGACGTACACACGCAAGAGCAAGTCGCCGGACGAGATTT
CGGAGAAGAGCAGCGCAGGAGGAGGATCTGGCGCATCGGGAACTGCGTCT
TCATCAGCCTGTCAGCATAAAGACGGCGGTGCCTCCAAGTGCCGCAAATG
CCGCGAGTGCCGTGAATGCAAACGTCGTGTGGAAACCGAAGCGATGTACT
GCCACTTGTGCAGCGGATTATACCACATGGACTGCCACGAGTTCACCAAA
AATCGCCAGCTGATGCAGCTGCAGAACTCTCGCTGCCCCCCATGCTTGCG
CGAAAAAGATAAGTTGGAGAAGTAGAAGCTTTCTAGACCAT
BS13038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lint-1-RE | 1809 | CG1908-PE | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Lint-1-RA | 1809 | CG1908-PA | 1..1809 | 17..1825 | 9045 | 100 | Plus |
Lint-1-RD | 1623 | CG1908-PD | 1..1623 | 203..1825 | 8115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lint-1-RE | 2412 | CG1908-RE | 392..2200 | 17..1825 | 9045 | 100 | Plus |
Lint-1-RA | 2291 | CG1908-RA | 271..2079 | 17..1825 | 9045 | 100 | Plus |
Lint-1-RD | 2535 | CG1908-RD | 688..2323 | 190..1825 | 8180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11150635..11152127 | 190..1682 | 7465 | 100 | Plus |
X | 23542271 | X | 11152237..11152380 | 1682..1825 | 720 | 100 | Plus |
X | 23542271 | X | 11149714..11149851 | 17..154 | 690 | 100 | Plus |
X | 23542271 | X | 11149924..11149961 | 154..191 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frogger | 2483 | frogger FROGGER 2483bp | 753..789 | 900..864 | 113 | 78.4 | Minus |
BS13038.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:47 Download gff for
BS13038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1908-RA | 266..2074 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:32 Download gff for
BS13038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lint-1-RA | 271..2079 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:38 Download gff for
BS13038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1908-RA | 266..2074 | 17..1825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:55 Download gff for
BS13038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lint-1-RA | 271..2079 | 17..1825 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:55 Download gff for
BS13038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11152238..11152380 | 1683..1825 | 100 | | Plus |
X | 11149714..11149851 | 17..154 | 100 | -> | Plus |
X | 11149925..11149960 | 155..190 | 100 | -> | Plus |
X | 11150636..11152127 | 191..1682 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:32 Download gff for
BS13038.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11043747..11043884 | 17..154 | 100 | -> | Plus |
arm_X | 11043958..11043993 | 155..190 | 100 | -> | Plus |
arm_X | 11044669..11046160 | 191..1682 | 100 | -> | Plus |
arm_X | 11046271..11046413 | 1683..1825 | 100 | | Plus |
BS13038.3prime Sequence
774 bp (723 high quality bases) assembled on 2006-10-13
> BS13038.3prime
ATGGTCTAGAAAGCTTCTACTTCTCCAACTTATCTTTTTCGCGCAAGCAT
GGGGGGCAGCGAGAGTTCTGCAGCTGCATCAGCTGGCGATTTTTGGTGAA
CTCGTGGCAGTCCATGTGGTATAATCCGCTGCACAAGTGGCAGTACATCG
CTTCGGTTTCCACACGACGTTTGCATTCACGGCACTCGCGGCATTTGCGG
CACTTGGAGGCACCGCCGTCTTTATGCTGACAGGCTGATGAAGACGCAGT
TCCCGATGCGCCAGATCCTCCTCCTGCGCTGCTCTTCTCCGAAATCTCGT
CCGGCGACTTGCTCTTGCGTGTGTACGTCCTCTTCGAGTTGGCCTGCAAA
CGTTTTTCCGTCGGCGAGAGCAGGAATTCGGACTTCTCCTTGGTCTTCTT
CTGACCACGAACGCCCATGACTAACGCGTCCACGGCATTCAACTGCTGGC
CATAGTGAAAATCCACTCCGCTGGCATTCTGAACGGTGCGACGCTTGCGC
TTCGAGTGGCGCTGACTGAGCTTCTTGAGCACCTCCGGCGAGTAGAGCTC
AAAGAGGCCGAGGAACGTCTCCTGGCCGTACTCCTCCGGCTGGGTGCGGC
TCTCGCGCGGCTCATCGCGCCACTGGGCGGCGGATGCGACGCGTCTTTGC
TGCTCCTGCTGCAGCTCGGCACTGGAATCATCGGAGCTGCCGGATGACGA
TACCGCTGGCTGCGACTGTCCACTGGATGTGGGCGTTGGCGAGGATTTCC
TGCACGTGTTTTTGCTCTTCGCGG
BS13038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1908-PA | 1809 | CG1908-RA | 1052..1809 | 774..17 | 3790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lint-1-RD | 2535 | CG1908-RD | 1566..2323 | 774..17 | 3790 | 100 | Minus |
Lint-1-RC | 2445 | CG1908-RC | 1476..2233 | 774..17 | 3790 | 100 | Minus |
Lint-1-RE | 2412 | CG1908-RE | 1443..2200 | 774..17 | 3790 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11151513..11152127 | 774..160 | 3075 | 100 | Minus |
X | 23542271 | X | 11152237..11152380 | 160..17 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:20:18 has no hits.
BS13038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:28 Download gff for
BS13038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1908-PA | 1052..1809 | 17..774 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:50:48 Download gff for
BS13038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lint-1-RE | 1443..2206 | 10..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:46:44 Download gff for
BS13038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lint-1-RE | 1443..2206 | 10..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:46:44 Download gff for
BS13038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11151513..11152127 | 160..774 | 100 | -> | Minus |
X | 11152238..11152386 | 10..159 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:50:48 Download gff for
BS13038.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11045546..11046160 | 160..774 | 100 | -> | Minus |
arm_X | 11046271..11046419 | 10..159 | 98 | | Minus |
BS13038.5prime Sequence
849 bp (787 high quality bases) assembled on 2006-10-13
> BS13038.5prime
GAAGTTATCAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCA
AGTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAG
AACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCA
CGCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGC
AGATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAAT
GCCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATT
CTCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCC
ATGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTAT
AAGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTAT
TCGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGC
TTAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCG
GTTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTG
GCTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAAT
CGAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGA
GAGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAAC
CGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTC
CACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCA
BS13038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:19:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1908-PA | 1809 | CG1908-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lint-1-RE | 2412 | CG1908-RE | 392..1224 | 17..849 | 4165 | 100 | Plus |
Lint-1-RA | 2291 | CG1908-RA | 271..1103 | 17..849 | 4165 | 100 | Plus |
Lint-1-RD | 2535 | CG1908-RD | 688..1347 | 190..849 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11150635..11151294 | 190..849 | 3300 | 100 | Plus |
X | 23542271 | X | 11149714..11149851 | 17..154 | 690 | 100 | Plus |
X | 23542271 | X | 11149924..11149961 | 154..191 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:47:05 has no hits.
BS13038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:29 Download gff for
BS13038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1908-PA | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:58 Download gff for
BS13038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lint-1-RA | 271..1102 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:47 Download gff for
BS13038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lint-1-RA | 271..1102 | 17..848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:47 Download gff for
BS13038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11149714..11149851 | 17..154 | 100 | -> | Plus |
X | 11149925..11149960 | 155..190 | 100 | -> | Plus |
X | 11150636..11151293 | 191..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:58 Download gff for
BS13038.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11043747..11043884 | 17..154 | 100 | -> | Plus |
arm_X | 11043958..11043993 | 155..190 | 100 | -> | Plus |
arm_X | 11044669..11045326 | 191..848 | 100 | | Plus |
BS13038.pep Sequence
Translation from 16 to 1824
> BS13038.pep
MSKYHKERKYAKFRYYMEKYYVLPLELKNDIIYCQRSLRDFLKVHALVSE
VFDEQADADPVQMRRILDELEEEVYEINAEQQFLLLRLNDSLQEFSVKLK
ENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFL
LSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDE
ATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAEL
SQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLE
ITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNN
TAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAA
QWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN
ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLLSPTEKRLQANSKRT
YTRKSKSPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE
CKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSRCPPCLREKDKL
EK*
BS13038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lint-1-PE | 602 | CG1908-PE | 1..602 | 1..602 | 3109 | 100 | Plus |
Lint-1-PA | 602 | CG1908-PA | 1..602 | 1..602 | 3109 | 100 | Plus |
Lint-1-PD | 540 | CG1908-PD | 1..540 | 63..602 | 2782 | 100 | Plus |
Lint-1-PC | 540 | CG1908-PC | 1..540 | 63..602 | 2782 | 100 | Plus |