Clone BS13038 Report

Search the DGRC for BS13038

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:130
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptLint-1-RA
Protein status:BS13038.pep: full length peptide match
Sequenced Size:1841

Clone Sequence Records

BS13038.complete Sequence

1841 bp assembled on 2009-12-07

GenBank Submission: KX805261

> BS13038.complete
GAAGTTATCAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCA
AGTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAG
AACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCA
CGCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGC
AGATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAAT
GCCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATT
CTCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCC
ATGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTAT
AAGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTAT
TCGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGC
TTAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCG
GTTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTG
GCTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAAT
CGAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGA
GAGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAAC
CGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTC
CACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCAG
GCATTGAGAAGGGCCAGAAAGACGAAGCAGCAGCCACGTTTGTTCGACGA
CGAGGAGGACCTGGAGATCACCAGTTTGCAGAACGATCGCAACAAGAACA
GAACCAGCGATGGCAAGGGGACACCGCCATCGCTGGAGCCAACGAATGCT
GCCGCCAATCAGGCAGCCAAGAAGACCATCCCACAAATGTCTAGTCAGGG
GATGGCGAAGAATAATACCGCGAAGAGCAAAAACACGTGCAGGAAATCCT
CGCCAACGCCCACATCCAGTGGACAGTCGCAGCCAGCGGTATCGTCATCC
GGCAGCTCCGATGATTCCAGTGCCGAGCTGCAGCAGGAGCAGCAAAGACG
CGTCGCATCCGCCGCCCAGTGGCGCGATGAGCCGCGCGAGAGCCGCACCC
AGCCGGAGGAGTACGGCCAGGAGACGTTCCTCGGCCTCTTTGAGCTCTAC
TCGCCGGAGGTGCTCAAGAAGCTCAGTCAGCGCCACTCGAAGCGCAAGCG
TCGCACCGTTCAGAATGCCAGCGGAGTGGATTTTCACTATGGCCAGCAGT
TGAATGCCGTGGACGCGTTAGTCATGGGCGTTCGTGGTCAGAAGAAGACC
AAGGAGAAGTCCGAATTCCTGCTCTCGCCGACGGAAAAACGTTTGCAGGC
CAACTCGAAGAGGACGTACACACGCAAGAGCAAGTCGCCGGACGAGATTT
CGGAGAAGAGCAGCGCAGGAGGAGGATCTGGCGCATCGGGAACTGCGTCT
TCATCAGCCTGTCAGCATAAAGACGGCGGTGCCTCCAAGTGCCGCAAATG
CCGCGAGTGCCGTGAATGCAAACGTCGTGTGGAAACCGAAGCGATGTACT
GCCACTTGTGCAGCGGATTATACCACATGGACTGCCACGAGTTCACCAAA
AATCGCCAGCTGATGCAGCTGCAGAACTCTCGCTGCCCCCCATGCTTGCG
CGAAAAAGATAAGTTGGAGAAGTAGAAGCTTTCTAGACCAT

BS13038.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RE 1809 CG1908-PE 1..1809 17..1825 9045 100 Plus
Lint-1-RA 1809 CG1908-PA 1..1809 17..1825 9045 100 Plus
Lint-1-RD 1623 CG1908-PD 1..1623 203..1825 8115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RE 2412 CG1908-RE 392..2200 17..1825 9045 100 Plus
Lint-1-RA 2291 CG1908-RA 271..2079 17..1825 9045 100 Plus
Lint-1-RD 2535 CG1908-RD 688..2323 190..1825 8180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11150635..11152127 190..1682 7465 100 Plus
X 23542271 X 11152237..11152380 1682..1825 720 100 Plus
X 23542271 X 11149714..11149851 17..154 690 100 Plus
X 23542271 X 11149924..11149961 154..191 190 100 Plus
Blast to na_te.dros performed 2014-11-28 01:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
frogger 2483 frogger FROGGER 2483bp 753..789 900..864 113 78.4 Minus

BS13038.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:47 Download gff for BS13038.complete
Subject Subject Range Query Range Percent Splice Strand
CG1908-RA 266..2074 17..1825 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:32 Download gff for BS13038.complete
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..2079 17..1825 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:38 Download gff for BS13038.complete
Subject Subject Range Query Range Percent Splice Strand
CG1908-RA 266..2074 17..1825 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:55 Download gff for BS13038.complete
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..2079 17..1825 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:55 Download gff for BS13038.complete
Subject Subject Range Query Range Percent Splice Strand
X 11152238..11152380 1683..1825 100   Plus
X 11149714..11149851 17..154 100 -> Plus
X 11149925..11149960 155..190 100 -> Plus
X 11150636..11152127 191..1682 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:32 Download gff for BS13038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11043747..11043884 17..154 100 -> Plus
arm_X 11043958..11043993 155..190 100 -> Plus
arm_X 11044669..11046160 191..1682 100 -> Plus
arm_X 11046271..11046413 1683..1825 100   Plus

BS13038.3prime Sequence

774 bp (723 high quality bases) assembled on 2006-10-13

> BS13038.3prime
ATGGTCTAGAAAGCTTCTACTTCTCCAACTTATCTTTTTCGCGCAAGCAT
GGGGGGCAGCGAGAGTTCTGCAGCTGCATCAGCTGGCGATTTTTGGTGAA
CTCGTGGCAGTCCATGTGGTATAATCCGCTGCACAAGTGGCAGTACATCG
CTTCGGTTTCCACACGACGTTTGCATTCACGGCACTCGCGGCATTTGCGG
CACTTGGAGGCACCGCCGTCTTTATGCTGACAGGCTGATGAAGACGCAGT
TCCCGATGCGCCAGATCCTCCTCCTGCGCTGCTCTTCTCCGAAATCTCGT
CCGGCGACTTGCTCTTGCGTGTGTACGTCCTCTTCGAGTTGGCCTGCAAA
CGTTTTTCCGTCGGCGAGAGCAGGAATTCGGACTTCTCCTTGGTCTTCTT
CTGACCACGAACGCCCATGACTAACGCGTCCACGGCATTCAACTGCTGGC
CATAGTGAAAATCCACTCCGCTGGCATTCTGAACGGTGCGACGCTTGCGC
TTCGAGTGGCGCTGACTGAGCTTCTTGAGCACCTCCGGCGAGTAGAGCTC
AAAGAGGCCGAGGAACGTCTCCTGGCCGTACTCCTCCGGCTGGGTGCGGC
TCTCGCGCGGCTCATCGCGCCACTGGGCGGCGGATGCGACGCGTCTTTGC
TGCTCCTGCTGCAGCTCGGCACTGGAATCATCGGAGCTGCCGGATGACGA
TACCGCTGGCTGCGACTGTCCACTGGATGTGGGCGTTGGCGAGGATTTCC
TGCACGTGTTTTTGCTCTTCGCGG

BS13038.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1908-PA 1809 CG1908-RA 1052..1809 774..17 3790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RD 2535 CG1908-RD 1566..2323 774..17 3790 100 Minus
Lint-1-RC 2445 CG1908-RC 1476..2233 774..17 3790 100 Minus
Lint-1-RE 2412 CG1908-RE 1443..2200 774..17 3790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11151513..11152127 774..160 3075 100 Minus
X 23542271 X 11152237..11152380 160..17 720 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:20:18 has no hits.

BS13038.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:28 Download gff for BS13038.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1908-PA 1052..1809 17..774 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:50:48 Download gff for BS13038.3prime
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RE 1443..2206 10..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:46:44 Download gff for BS13038.3prime
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RE 1443..2206 10..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:46:44 Download gff for BS13038.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11151513..11152127 160..774 100 -> Minus
X 11152238..11152386 10..159 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:50:48 Download gff for BS13038.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11045546..11046160 160..774 100 -> Minus
arm_X 11046271..11046419 10..159 98   Minus

BS13038.5prime Sequence

849 bp (787 high quality bases) assembled on 2006-10-13

> BS13038.5prime
GAAGTTATCAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCA
AGTTCAGGTACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAG
AACGACATCATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCA
CGCGTTGGTCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGC
AGATGCGTCGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAAT
GCCGAGCAGCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATT
CTCCGTGAAGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCC
ATGAGTACGTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTAT
AAGATTATGCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTAT
TCGCAAGCACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGC
TTAAGCTCAGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCG
GTTAGGGGATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTG
GCTCCAAGGCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAAT
CGAAGTCGAAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGA
GAGAATATCAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAAC
CGTAGTGGCTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTC
CACCAGTAAACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCA

BS13038.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 21:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1908-PA 1809 CG1908-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-RE 2412 CG1908-RE 392..1224 17..849 4165 100 Plus
Lint-1-RA 2291 CG1908-RA 271..1103 17..849 4165 100 Plus
Lint-1-RD 2535 CG1908-RD 688..1347 190..849 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11150635..11151294 190..849 3300 100 Plus
X 23542271 X 11149714..11149851 17..154 690 100 Plus
X 23542271 X 11149924..11149961 154..191 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:47:05 has no hits.

BS13038.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:36:29 Download gff for BS13038.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1908-PA 1..832 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:14:58 Download gff for BS13038.5prime
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..1102 17..848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:47 Download gff for BS13038.5prime
Subject Subject Range Query Range Percent Splice Strand
Lint-1-RA 271..1102 17..848 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:47 Download gff for BS13038.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11149714..11149851 17..154 100 -> Plus
X 11149925..11149960 155..190 100 -> Plus
X 11150636..11151293 191..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:14:58 Download gff for BS13038.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11043747..11043884 17..154 100 -> Plus
arm_X 11043958..11043993 155..190 100 -> Plus
arm_X 11044669..11045326 191..848 100   Plus

BS13038.pep Sequence

Translation from 16 to 1824

> BS13038.pep
MSKYHKERKYAKFRYYMEKYYVLPLELKNDIIYCQRSLRDFLKVHALVSE
VFDEQADADPVQMRRILDELEEEVYEINAEQQFLLLRLNDSLQEFSVKLK
ENNIMFLPDIAHEYVSAQVVPLIVDPNYKIMPQSVMARDTEEMLIRKHFL
LSQDDDSGMPPLKLSELDENIPLMLAPPVRGLGQQIAAVKPEPEWLQGDE
ATVSVPPPPPQSKSKLMKGSLDSTPAKRENISRSSPPPLAPITQTVVAEL
SQVPPSPQAESPPVNFHVVAQSRKNLQQALRRARKTKQQPRLFDDEEDLE
ITSLQNDRNKNRTSDGKGTPPSLEPTNAAANQAAKKTIPQMSSQGMAKNN
TAKSKNTCRKSSPTPTSSGQSQPAVSSSGSSDDSSAELQQEQQRRVASAA
QWRDEPRESRTQPEEYGQETFLGLFELYSPEVLKKLSQRHSKRKRRTVQN
ASGVDFHYGQQLNAVDALVMGVRGQKKTKEKSEFLLSPTEKRLQANSKRT
YTRKSKSPDEISEKSSAGGGSGASGTASSSACQHKDGGASKCRKCRECRE
CKRRVETEAMYCHLCSGLYHMDCHEFTKNRQLMQLQNSRCPPCLREKDKL
EK*

BS13038.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
Lint-1-PE 602 CG1908-PE 1..602 1..602 3109 100 Plus
Lint-1-PA 602 CG1908-PA 1..602 1..602 3109 100 Plus
Lint-1-PD 540 CG1908-PD 1..540 63..602 2782 100 Plus
Lint-1-PC 540 CG1908-PC 1..540 63..602 2782 100 Plus